Date: Sat, 1 Nov 2008 15:36:42 GMT From: "Pedro F. Giffuni" <giffunip@tutopia.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/128520: Update math/R to version 2.7.2 Message-ID: <200811011536.mA1Fagcn044767@www.freebsd.org> Resent-Message-ID: <200811011540.mA1Fe1ff086293@freefall.freebsd.org>
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>Number: 128520 >Category: ports >Synopsis: Update math/R to version 2.7.2 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sat Nov 01 15:40:01 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Pedro F. Giffuni >Release: FreeBSD-7.0-RELEASE (amd64) >Organization: >Environment: %uname -a FreeBSD kakumen.cable.net.co 7.0-RELEASE-p3 FreeBSD 7.0-RELEASE-p3 #0: Fri Aug 8 16:42:27 COT 2008 root@kakumen.cable.net.co:/usr/src/sys/amd64/compile/GENERIC amd64 >Description: - Update to version 2.7.2 - Add back the PDF_MANUAL option but leave it off by default. I know R-2.8.0 is available but this was easier for the time being. >How-To-Repeat: >Fix: diff -ruN R.orig/Makefile R/Makefile --- R.orig/Makefile 2008-11-01 09:55:47.000000000 -0500 +++ R/Makefile 2008-11-01 10:16:21.000000000 -0500 @@ -7,7 +7,7 @@ # PORTNAME= R -PORTVERSION= 2.7.1 +PORTVERSION= 2.7.2 CATEGORIES= math lang MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \ ftp://cran.r-project.org/pub/R/src/base/R-2/ \ @@ -39,6 +39,7 @@ GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \ PCRE_PORT "Use PCRE port instead of bundled source" on \ DVI_MANUALS "Install DVI manuals (requires TeX)" off \ + PDF_MANUALS "Install PDF manuals (requires TeX)" off \ INFO_MANUALS "Install GNU info manuals" on \ LETTER_PAPER "Use US Letter paper" off @@ -134,6 +135,15 @@ PLIST_SUB+= DVI_MANUAL="@comment " .endif +.if defined(WITHOUT_PDF_MANUALS) && !defined(NOPORTDOCS) +PLIST_SUB+= PDF_MANUAL="@comment " +.else +PLIST_SUB+= PDF_MANUAL="" +BUILD_DEPENDS+= pdflatex:${PORTSDIR}/print/teTeX-base +ALL_TARGET+= pdf +INSTALL_TARGET+=install-pdf +.endif + .if defined(WITH_INFO_MANUALS) && !defined(NOPORTDOCS) ALL_TARGET+= info INFO= R-FAQ R-admin R-data R-exts R-intro R-lang diff -ruN R.orig/distinfo R/distinfo --- R.orig/distinfo 2008-11-01 09:55:47.000000000 -0500 +++ R/distinfo 2008-11-01 09:58:26.000000000 -0500 @@ -1,3 +1,3 @@ -MD5 (R-2.7.1.tar.gz) = 565b06a1f3f11020399934cc7b47a59d -SHA256 (R-2.7.1.tar.gz) = f0449d23257f98d71ed7749a2ed30f69023a05259f392e4c5fd8fac9db485de7 -SIZE (R-2.7.1.tar.gz) = 16413667 +MD5 (R-2.7.2.tar.gz) = 6122945e9301825b97a506151b3cefde +SHA256 (R-2.7.2.tar.gz) = 7184c1f85fafce518e6dbccb5a64ba47a62d8694c7019da0e1c1e83ff98c3ff4 +SIZE (R-2.7.2.tar.gz) = 16466658 diff -ruN R.orig/pkg-plist R/pkg-plist --- R.orig/pkg-plist 2008-11-01 09:55:47.000000000 -0500 +++ R/pkg-plist 2008-11-01 10:23:16.000000000 -0500 @@ -193,11 +193,13 @@ lib/R/library/MASS/R-ex/parcoord.R lib/R/library/MASS/R-ex/petrol.R lib/R/library/MASS/R-ex/plot.mca.R +lib/R/library/MASS/R-ex/plot.profile.R lib/R/library/MASS/R-ex/polr.R lib/R/library/MASS/R-ex/predict.glmmPQL.R lib/R/library/MASS/R-ex/predict.lda.R lib/R/library/MASS/R-ex/predict.lqs.R lib/R/library/MASS/R-ex/predict.qda.R +lib/R/library/MASS/R-ex/profile.glm.R lib/R/library/MASS/R-ex/qda.R lib/R/library/MASS/R-ex/rational.R lib/R/library/MASS/R-ex/renumerate.R @@ -335,12 +337,14 @@ lib/R/library/MASS/help/phones lib/R/library/MASS/help/plot.lda lib/R/library/MASS/help/plot.mca +lib/R/library/MASS/help/plot.profile lib/R/library/MASS/help/polr lib/R/library/MASS/help/predict.glmmPQL lib/R/library/MASS/help/predict.lda lib/R/library/MASS/help/predict.lqs lib/R/library/MASS/help/predict.mca lib/R/library/MASS/help/predict.qda +lib/R/library/MASS/help/profile.glm lib/R/library/MASS/help/qda lib/R/library/MASS/help/quine lib/R/library/MASS/help/rational @@ -490,12 +494,14 @@ lib/R/library/MASS/html/phones.html lib/R/library/MASS/html/plot.lda.html lib/R/library/MASS/html/plot.mca.html +lib/R/library/MASS/html/plot.profile.html lib/R/library/MASS/html/polr.html lib/R/library/MASS/html/predict.glmmPQL.html lib/R/library/MASS/html/predict.lda.html lib/R/library/MASS/html/predict.lqs.html lib/R/library/MASS/html/predict.mca.html lib/R/library/MASS/html/predict.qda.html +lib/R/library/MASS/html/profile.glm.html lib/R/library/MASS/html/qda.html lib/R/library/MASS/html/quine.html lib/R/library/MASS/html/rational.html @@ -644,12 +650,14 @@ lib/R/library/MASS/latex/phones.tex lib/R/library/MASS/latex/plot.lda.tex lib/R/library/MASS/latex/plot.mca.tex +lib/R/library/MASS/latex/plot.profile.tex lib/R/library/MASS/latex/polr.tex lib/R/library/MASS/latex/predict.glmmPQL.tex lib/R/library/MASS/latex/predict.lda.tex lib/R/library/MASS/latex/predict.lqs.tex lib/R/library/MASS/latex/predict.mca.tex lib/R/library/MASS/latex/predict.qda.tex +lib/R/library/MASS/latex/profile.glm.tex lib/R/library/MASS/latex/qda.tex lib/R/library/MASS/latex/quine.tex lib/R/library/MASS/latex/rational.tex @@ -8823,6 +8831,14 @@ %%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps %%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi %%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf +%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf @dirrm %%DOCSDIR%%/manual @dirrm %%DOCSDIR%%/html/search @dirrm %%DOCSDIR%%/html >Release-Note: >Audit-Trail: >Unformatted:
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