Date: Tue, 8 Oct 2019 16:25:21 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 112arm64-quarterly][biology/canu] Failed for canu-1.8_5 in build Message-ID: <201910081625.x98GPLle085710@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: branches/2019Q4/biology/canu/Makefile 509290 2019-08-19 15:35:27Z jbeich $ Log URL: http://thunderx1.nyi.freebsd.org/data/112arm64-quarterly/513847/logs/canu-1.8_5.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=112arm64-quarterly&build=513847 Log: =>> Building biology/canu build started at Tue Oct 8 16:18:46 UTC 2019 port directory: /usr/ports/biology/canu package name: canu-1.8_5 building for: FreeBSD 112arm64-quarterly-job-12 11.2-RELEASE-p14 FreeBSD 11.2-RELEASE-p14 1102000 arm64 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q4/biology/canu/Makefile 509290 2019-08-19 15:35:27Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300002 Jail OSVERSION: 1102000 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1102000 UNAME_v=FreeBSD 11.2-RELEASE-p14 1102000 UNAME_r=11.2-RELEASE-p14 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/112arm64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/112arm64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=112arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/112arm64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- DESTDIR=/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src CANU_BUILD_ENV=ports PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc9" CFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -fno-strict-aliasing " CPP="cpp9" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 " LIBS="" CXX="g++9" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -Wl,-rpath=/usr/local/lib/gcc9 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.0 PERL_VER=5.30 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/canu" EXAMPLESDIR="share/examples/canu" DATADIR="share/canu" WWWDIR="www/canu" ETCDIR="etc/canu" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.8+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/canu DOCSDIR=/usr/local/share/doc/canu EXAMPLESDIR=/usr/local/share/examples/canu WWWDIR=/usr/local/www/canu ETCDIR=/usr/local/etc/canu --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd11.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p14 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> canu-1.8_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz [112arm64-quarterly-job-12] Installing pkg-1.12.0... [112arm64-quarterly-job-12] Extracting pkg-1.12.0: .......... done ===> canu-1.8_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of canu-1.8_5 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-1.8_5 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-1.8_5 for building => SHA256 Checksum OK for marbl-canu-v1.8_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by canu-1.8_5 for building ===> Extracting for canu-1.8_5 => SHA256 Checksum OK for marbl-canu-v1.8_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for canu-1.8_5 ===> Applying FreeBSD patches for canu-1.8_5 =========================================================================== =======================<phase: build-depends >============================ ===> canu-1.8_5 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [112arm64-quarterly-job-12] Installing gmake-4.2.1_3... [112arm64-quarterly-job-12] `-- Installing gettext-runtime-0.20.1... [112arm64-quarterly-job-12] | `-- Installing indexinfo-0.3.1... [112arm64-quarterly-job-12] | `-- Extracting indexinfo-0.3.1: .... done [112arm64-quarterly-job-12] `-- Extracting gettext-runtime-0.20.1: .......... done [112arm64-quarterly-job-12] Extracting gmake-4.2.1_3: .......... done ===> canu-1.8_5 depends on executable: gmake - found ===> Returning to build of canu-1.8_5 ===> canu-1.8_5 depends on executable: gcc9 - not found ===> Installing existing package /packages/All/gcc9-9.2.0.txz [112arm64-quarterly-job-12] Installing gcc9-9.2.0... [112arm64-quarterly-job-12] `-- Installing binutils-2.32_1,1... <snip> | ^~~~~~~ utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252:20: error: expected ';' at end of member declaration 252 | virtual void * get_deleter( detail::sp_typeinfo const & ti ) | ^~~~~~~~~~~ | ; utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252:52: error: expected ')' before 'const' 252 | virtual void * get_deleter( detail::sp_typeinfo const & ti ) | ~ ^~~~~~ | ) In file included from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:395:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 395 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) ) | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28, from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:518:12: error: expected ';' at end of member declaration 518 | void * get_deleter( sp_typeinfo const & ti ) const | ^~~~~~~~~~~ | ; utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:518:36: error: expected ')' before 'const' 518 | void * get_deleter( sp_typeinfo const & ti ) const | ~ ^~~~~~ | ) In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:242:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 242 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:441:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 441 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn() | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:454:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 454 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn() | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:520:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 520 | shared_ptr & operator=( std::auto_ptr<Y> & r ) | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:529:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 529 | shared_ptr & operator=( std::auto_ptr<Y> && r ) | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:695:12: error: expected ';' at end of member declaration 695 | void * _internal_get_deleter( boost::detail::sp_typeinfo const & ti ) const BOOST_NOEXCEPT | ^~~~~~~~~~~~~~~~~~~~~ | ; utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:695:61: error: expected ')' before 'const' 695 | void * _internal_get_deleter( boost::detail::sp_typeinfo const & ti ) const BOOST_NOEXCEPT | ~ ^~~~~~ | ) In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)': utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:531:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations] 531 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this ); | ^~~~~~~~ In file included from /usr/local/lib/gcc9/include/c++/memory:80, from utgcns/libboost/boost/unordered/unordered_set_fwd.hpp:14, from utgcns/libboost/boost/unordered/unordered_set.hpp:17, from utgcns/libboost/boost/unordered_set.hpp:17, from utgcns/libboost/boost/graph/adjacency_list.hpp:21, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: /usr/local/lib/gcc9/include/c++/bits/unique_ptr.h:53:28: note: declared here 53 | template<typename> class auto_ptr; | ^~~~~~~~ In file included from utgcns/libboost/boost/shared_ptr.hpp:17, from utgcns/libboost/boost/property_map/vector_property_map.hpp:14, from utgcns/libboost/boost/property_map/property_map.hpp:600, from utgcns/libboost/boost/graph/adjacency_list.hpp:36, from utgcns/libpbutgcns/AlnGraphBoost.H:69, from utgcns/libcns/unitigConsensus.C:77: utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: In function 'D* boost::detail::basic_get_deleter(const boost::shared_ptr<U>&)': utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887:71: error: expected primary-expression before ')' token 887 | return static_cast<D *>( p._internal_get_deleter(BOOST_SP_TYPEID(D)) ); | ^ utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887:54: error: there are no arguments to 'BOOST_SP_TYPEID' that depend on a template parameter, so a declaration of 'BOOST_SP_TYPEID' must be available [-fpermissive] 887 | return static_cast<D *>( p._internal_get_deleter(BOOST_SP_TYPEID(D)) ); | ^~~~~~~~~~~~~~~ utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887:54: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated) utgcns/libcns/unitigConsensus.C: In member function 'bool unitigConsensus::alignFragment(bool)': utgcns/libcns/unitigConsensus.C:1562:23: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1562 | oaFull->display("utgCns::alignFragment()--", true); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ utgcns/libcns/unitigConsensus.C:1660:23: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 1660 | oaFull->display("utgCns::alignFragment()-- ", true); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[1]: *** [Makefile:705: /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-aarch64/obj/lib/libcanu.a/utgcns/libcns/unitigConsensus.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src' *** Error code 1 Stop. make: stopped in /usr/ports/biology/canu
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