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Tue, 24 May 2022 22:39:42 GMT (envelope-from git) Date: Tue, 24 May 2022 22:39:42 GMT Message-Id: <202205242239.24OMdgul071146@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 2c5f8b153e09 - main - biology/gatk: Use Java 17 instead of EOLed Java 12 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 2c5f8b153e090e52431cd867616f6a58dc73d1a5 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=2c5f8b153e090e52431cd867616f6a58dc73d1a5 commit 2c5f8b153e090e52431cd867616f6a58dc73d1a5 Author: Yuri Victorovich AuthorDate: 2022-05-24 22:38:23 +0000 Commit: Yuri Victorovich CommitDate: 2022-05-24 22:39:38 +0000 biology/gatk: Use Java 17 instead of EOLed Java 12 --- biology/gatk/Makefile | 3 ++- biology/gatk/distinfo | 6 +++--- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 9e4672363cc2..2aeee40d3c31 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -1,5 +1,6 @@ PORTNAME= gatk DISTVERSION= 4.2.6.1 +PORTREVISION= 1 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -16,7 +17,7 @@ BUILD_DEPENDS= gradle:devel/gradle USES= gettext-runtime USE_JAVA= yes -JAVA_VERSION= 12 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=76025, tid=0x000000000006e359 guarantee(val < (1U << nbits)) failed: Field too big for insn +JAVA_VERSION= 17 # Java 8 fails on aarch64: Internal Error (assembler_aarch64.hpp:237), pid=76025, tid=0x000000000006e359 guarantee(val < (1U << nbits)) failed: Field too big for insn USE_GITHUB= yes GH_ACCOUNT= broadinstitute diff --git a/biology/gatk/distinfo b/biology/gatk/distinfo index 59042632fd71..12330837aa1a 100644 --- a/biology/gatk/distinfo +++ b/biology/gatk/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1653271029 -SHA256 (gatk-4.2.6.1-deps.tar.gz) = 29c953f5e4ced2c06115d0f1ec8a501a5f17d0ed07337654249732680851c880 -SIZE (gatk-4.2.6.1-deps.tar.gz) = 545446960 +TIMESTAMP = 1653429535 +SHA256 (gatk-4.2.6.1-deps.tar.gz) = 6973e6a8ba1292b14c8238d7c831b1d9998c770f0f515881ed335c1de58a5ca2 +SIZE (gatk-4.2.6.1-deps.tar.gz) = 545456297 SHA256 (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 248cefeaf3ea62ad672ff6402d82631e8b85a03d019c29bbb44d842f799dda67 SIZE (broadinstitute-gatk-4.2.6.1_GH0.tar.gz) = 92503297