Date: Sun, 22 Oct 2017 01:15:38 GMT From: pkg-fallout@FreeBSD.org To: jrm@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 110amd64-default][math/R] Failed for R-3.4.2 in configure Message-ID: <201710220115.v9M1Fcgg053297@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Last committer: jrm@FreeBSD.org Ident: $FreeBSD: head/math/R/Makefile 450927 2017-09-29 17:54:02Z jrm $ Log URL: http://beefy9.nyi.freebsd.org/data/110amd64-default/452618/logs/R-3.4.2.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=110amd64-default&build=452618 Log: ====>> Building math/R build started at Sun Oct 22 01:14:19 UTC 2017 port directory: /usr/ports/math/R building for: FreeBSD 110amd64-default-job-03 11.0-RELEASE-p13 FreeBSD 11.0-RELEASE-p13 amd64 maintained by: jrm@FreeBSD.org Makefile ident: $FreeBSD: head/math/R/Makefile 450927 2017-09-29 17:54:02Z jrm $ Poudriere version: 3.1.21 Host OSVERSION: 1200050 Jail OSVERSION: 1100122 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p13 UNAME_r=11.0-RELEASE-p13 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-3.4.2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110amd64-default/ref/.p/pool MASTERNAME=110amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.21 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for R-3.4.2: ICU=on: Unicode support via ICU INFO=on: GNU info manuals LDOUBLE=on: Long double data type LETTER=off: US letter paper LIBR=on: Shared R library MEMPROF=off: Memory profiling via Rprofmem() and tracemem() NLS=on: Native Language Support OPENMP=off: Parallel processing support via OpenMP RPROF=on: R profiling via Rprof() X11=on: X11 graphics device ====> Require X11 GHOSTSCRIPT=on: Graphics device for bitmap files via Ghostscript JPEG=on: JPEG graphics device CAIROPANGO=on: Cairo graphics device and Pango multi-language text PNG=on: PNG graphics device TCLTK=on: Tcl/Tk GUI toolkit support TEXDOCS=off: Build/Install TeX-dependent documentation files TIFF=on: TIFF image format support ====> Options available for the single BLAS: you have to select exactly one of them ATLAS=off: ATLAS BLAS implementation OPENBLAS=off: OpenBLAS BLAS implementation NETLIB=off: Netlib BLAS implementation RBLAS=on: Use R-bundled BLAS implementation ====> Fortran language support: you have to select exactly one of them GFORTRAN=off: Build Fortran source with gfortran FLANG=on: Build Fortran source with flang ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-java --with-readline rdocdir=/usr/local/share/doc/R --with-ICU --enable-long-double --enable-R-shlib --disable-memory-profiling --disable-openmp --enable-R-profiling --with-x --without-blas --without-lapack --enable-BLAS-shlib --with-jpeglib --with-cairo --with-libpng --with-tcltk --with-libtiff --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="flang" FC="flang" FFLAGS="-O" r_cv_header_jpeglib_h=yes ac_cv_path_KPSEWHICH="" ac_cv_path_MAKEINDEX="" ac_cv_path_PDFLATEX="" ac_cv_path_PDFTEX="" ac_cv_path_TEX="" ac_cv_path_TEXI2DVI="" MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CM AKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="flang" FC="flang" FFLAGS="-O" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include" LDFLAGS=" -L/usr/local/flang/lib -lflang -lexecinfo -L/usr/local/lib -fstack-protector" LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- LIBVER=3.4 ICU="" NO_ICU="@comment " INFO="" NO_INFO="@comment " LDOUBLE="" NO_LDOUBLE="@comment " LETTER="@comment " NO_LETTER="" LIBR="" NO_LIBR="@comment " MEMPROF="@comment " NO_MEMPROF="" NLS="" NO_NLS="@comment " OPENMP="@comment " NO_OPENMP="" RPROF="" NO_RPROF="@comment " X11="" NO_X11="@comment " ATLAS="@comment " NO_ATLAS="" OPENBLAS="@comment " NO_OPENBLAS="" NETLIB="@comment " NO_NETLIB="" RBLAS="" NO_RBLAS="@comment " GFORTRAN="@comment " NO_GFORTRAN="" FLANG="" NO_FLANG="@comment " GHOSTSCRIPT="" NO_GHOSTSCRIPT="@comment " JPEG="" NO_JPEG="@comment " CAIROPANGO="" NO_CAIROPANGO="@comment " PNG="" NO_PNG="@comment " TCLTK="" NO_TCLTK="@comment " TEXDOCS="@comment " NO_TEXDOCS="" TIFF="" NO_TIFF="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.24.3 PERL_VER=5.24 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.24 DOCSDIR="share/doc/R" EXAMPLESDIR="share/examples/R" DATADIR="share/R" WWWDIR="www/R" ETCDIR="etc/R" --End PLIST_SUB-- --SUB_LIST-- ICU="" NO_ICU="@comment " INFO="" NO_INFO="@comment " LDOUBLE="" NO_LDOUBLE="@comment " LETTER="@comment " NO_LETTER="" LIBR="" NO_LIBR="@comment " MEMPROF="@comment " NO_MEMPROF="" NLS="" NO_NLS="@comment <snip> ===> Installing existing package /packages/All/curl-7.56.0.txz [110amd64-default-job-03] Installing curl-7.56.0... [110amd64-default-job-03] `-- Installing libnghttp2-1.26.0... [110amd64-default-job-03] `-- Extracting libnghttp2-1.26.0: .......... done [110amd64-default-job-03] Extracting curl-7.56.0: .......... done ===> R-3.4.2 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> Returning to build of R-3.4.2 ===> R-3.4.2 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> R-3.4.2 depends on shared library: libicui18n.so - not found ===> Installing existing package /packages/All/icu-59.1,1.txz [110amd64-default-job-03] Installing icu-59.1,1... [110amd64-default-job-03] Extracting icu-59.1,1: .......... done ===> R-3.4.2 depends on shared library: libicui18n.so - found (/usr/local/lib/libicui18n.so) ===> Returning to build of R-3.4.2 ===> R-3.4.2 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> R-3.4.2 depends on shared library: libtiff.so - found (/usr/local/lib/libtiff.so) ===> R-3.4.2 depends on shared library: libreadline.so.7 - found (/usr/local/lib/libreadline.so.7) ===> R-3.4.2 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> R-3.4.2 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) ===> R-3.4.2 depends on shared library: libtk86.so - not found ===> Installing existing package /packages/All/tk86-8.6.7.txz [110amd64-default-job-03] Installing tk86-8.6.7... [110amd64-default-job-03] `-- Installing libXft-2.3.2_1... [110amd64-default-job-03] | `-- Installing libXrender-0.9.10... [110amd64-default-job-03] | | `-- Installing renderproto-0.11.1... [110amd64-default-job-03] | | `-- Extracting renderproto-0.11.1: .... done [110amd64-default-job-03] | `-- Extracting libXrender-0.9.10: .......... done [110amd64-default-job-03] `-- Extracting libXft-2.3.2_1: ......... done [110amd64-default-job-03] `-- Installing tcl86-8.6.7... [110amd64-default-job-03] `-- Extracting tcl86-8.6.7: .......... done [110amd64-default-job-03] Extracting tk86-8.6.7: .......... done ===> R-3.4.2 depends on shared library: libtk86.so - found (/usr/local/lib/libtk86.so) ===> Returning to build of R-3.4.2 ===> R-3.4.2 depends on shared library: libtcl86.so - found (/usr/local/lib/libtcl86.so) ===> R-3.4.2 depends on shared library: libcairo.so - not found ===> Installing existing package /packages/All/cairo-1.14.8_1,2.txz [110amd64-default-job-03] Installing cairo-1.14.8_1,2... [110amd64-default-job-03] `-- Installing dri2proto-2.8... [110amd64-default-job-03] `-- Extracting dri2proto-2.8: .... done [110amd64-default-job-03] `-- Installing glproto-1.4.17... [110amd64-default-job-03] `-- Extracting glproto-1.4.17: ...... done [110amd64-default-job-03] `-- Installing mesa-libs-17.2.2... [110amd64-default-job-03] | `-- Installing libXdamage-1.1.4_3... [110amd64-default-job-03] | | `-- Installing damageproto-1.2.1... [110amd64-default-job-03] | | `-- Extracting damageproto-1.2.1: .... done [110amd64-default-job-03] | | `-- Installing libXfixes-5.0.3... [110amd64-default-job-03] | | `-- Installing fixesproto-5.0... [110amd64-default-job-03] | | `-- Extracting fixesproto-5.0: .... done [110amd64-default-job-03] | | `-- Extracting libXfixes-5.0.3: .......... done [110amd64-default-job-03] | `-- Extracting libXdamage-1.1.4_3: ...... done [110amd64-default-job-03] | `-- Installing libXxf86vm-1.1.4_1... [110amd64-default-job-03] | | `-- Installing xf86vidmodeproto-2.3.1... [110amd64-default-job-03] | | `-- Extracting xf86vidmodeproto-2.3.1: .... done [110amd64-default-job-03] | `-- Extracting libXxf86vm-1.1.4_1: .......... done [110amd64-default-job-03] | `-- Installing libdrm-2.4.83,1... [110amd64-default-job-03] | | `-- Installing libpciaccess-0.13.5... [110amd64-default-job-03] | | `-- Installing pciids-20171011... [110amd64-default-job-03] | | `-- Extracting pciids-20171011: ..... done [110amd64-default-job-03] | | `-- Extracting libpciaccess-0.13.5: ...... done [110amd64-default-job-03] | `-- Extracting libdrm-2.4.83,1: .......... done [110amd64-default-job-03] | `-- Installing libunwind-20170113_1... [110amd64-default-job-03] | `-- Extracting libunwind-20170113_1: .......... done [110amd64-default-job-03] | `-- Installing libxshmfence-1.2_2... [110amd64-default-job-03] | `-- Extracting libxshmfence-1.2_2: ......... done [110amd64-default-job-03] `-- Extracting mesa-libs-17.2.2: .......... done [110amd64-default-job-03] `-- Installing pixman-0.34.0... [110amd64-default-job-03] `-- Extracting pixman-0.34.0: .......... done [110amd64-default-job-03] `-- Installing xcb-util-renderutil-0.3.9_1... [110amd64-default-job-03] | `-- Installing xcb-util-0.4.0_2,1... [110amd64-default-job-03] | `-- Extracting xcb-util-0.4.0_2,1: .......... done [110amd64-default-job-03] `-- Extracting xcb-util-renderutil-0.3.9_1: ...... done [110amd64-default-job-03] Extracting cairo-1.14.8_1,2: .......... done ===> R-3.4.2 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> Returning to build of R-3.4.2 ===> R-3.4.2 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> R-3.4.2 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> R-3.4.2 depends on shared library: libpango-1.0.so - not found ===> Installing existing package /packages/All/pango-1.40.6.txz [110amd64-default-job-03] Installing pango-1.40.6... [110amd64-default-job-03] `-- Installing encodings-1.0.4_3,1... [110amd64-default-job-03] | `-- Installing font-util-1.3.1... [110amd64-default-job-03] | `-- Extracting font-util-1.3.1: .......... done [110amd64-default-job-03] `-- Extracting encodings-1.0.4_3,1: .......... done [110amd64-default-job-03] `-- Installing harfbuzz-1.5.1_1... [110amd64-default-job-03] | `-- Installing graphite2-1.3.10... [110amd64-default-job-03] | `-- Extracting graphite2-1.3.10: .......... done [110amd64-default-job-03] `-- Extracting harfbuzz-1.5.1_1: .......... done [110amd64-default-job-03] `-- Installing xorg-fonts-truetype-7.7_1... [110amd64-default-job-03] | `-- Installing dejavu-2.37... [110amd64-default-job-03] | | `-- Installing mkfontdir-1.0.7... [110amd64-default-job-03] | | `-- Installing mkfontscale-1.1.2... [110amd64-default-job-03] | | | `-- Installing libfontenc-1.1.3_1... [110amd64-default-job-03] | | | `-- Extracting libfontenc-1.1.3_1: ......... done [110amd64-default-job-03] | | `-- Extracting mkfontscale-1.1.2: .. done [110amd64-default-job-03] | | `-- Extracting mkfontdir-1.0.7: .. done [110amd64-default-job-03] | `-- Extracting dejavu-2.37: .......... done [110amd64-default-job-03] | `-- Installing font-bh-ttf-1.0.3_3... [110amd64-default-job-03] | `-- Extracting font-bh-ttf-1.0.3_3: .......... done [110amd64-default-job-03] | `-- Installing font-misc-ethiopic-1.0.3_3... [110amd64-default-job-03] | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done [110amd64-default-job-03] | `-- Installing font-misc-meltho-1.0.3_3... [110amd64-default-job-03] | `-- Extracting font-misc-meltho-1.0.3_3: .......... done [110amd64-default-job-03] Extracting pango-1.40.6: .......... done Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-3.4.2 depends on shared library: libpango-1.0.so - found (/usr/local/lib/libpango-1.0.so) ===> Returning to build of R-3.4.2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-3.4.2 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/R/work/R-3.4.2/tools/config.rpath configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd11.0 checking host system type... amd64-portbld-freebsd11.0 loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... missing checking for working autoconf... missing checking for working automake... missing checking for working autoheader... missing checking whether ln -s works... yes checking for bison... no checking for byacc... byacc checking for /usr/local/bin/ar... /usr/local/bin/ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... (cached) /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /usr/bin/tar checking for tex... (cached) no checking for pdftex... (cached) no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... (cached) no configure: WARNING: you cannot build PDF versions of vignettes and help pages checking for makeindex... (cached) no checking for texi2any... /usr/local/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/local/bin/install-info checking for texi2dvi... (cached) no checking for kpsewhich... (cached) no checking for latex inconsolata package... checking for unzip... /usr/bin/unzip checking for zip... no checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 checking for firefox... no checking for mozilla... no checking for galeon... no checking for opera... no checking for xdg-open... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... no configure: WARNING: I could not determine a browser checking for acroread... no checking for acroread4... no checking for xdg-open... no checking for evince... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... no checking for gpdf... no checking for kghostview... no configure: WARNING: I could not determine a PDF viewer checking for notangle... false checking for realpath... /bin/realpath checking for pkg-config... /usr/local/bin/pkg-config checking for gcc... cc checking whether the C compiler works... no configure: error: in `/wrkdirs/usr/ports/math/R/work/R-3.4.2': configure: error: C compiler cannot create executables See `config.log' for more details ===> Script "configure" failed unexpectedly. Please report the problem to jrm@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/math/R/work/R-3.4.2/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/R
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