Date: Fri, 19 Jul 2013 00:07:41 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [RELEASE - head-default] Build failed for nauty-2.4r2 during build Message-ID: <201307190007.r6J07fuc025323@beefy2.isc.freebsd.org>
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Maintainer: cs@FreeBSD.org Last committer: beat@FreeBSD.org Ident: $FreeBSD: head/math/nauty/Makefile 300896 2012-07-14 13:54:48Z beat $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-default/2013-07-18_19h03m42s/logs/nauty-2.4r2.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-default/2013-07-18_19h03m42s Log: ====>> Building math/nauty build started at Fri Jul 19 00:07:33 UTC 2013 port directory: /usr/ports/math/nauty building for: FreeBSD head-default-job-15 10.0-CURRENT FreeBSD 10.0-CURRENT amd64 maintained by: cs@FreeBSD.org Makefile ident: $FreeBSD: head/math/nauty/Makefile 300896 2012-07-14 13:54:48Z beat $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=1000035 UNAME_v=FreeBSD 10.0-CURRENT UNAME_r=10.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-default/ref PKG_EXT=txz FORCE_PACKAGE=yes tpid=13085 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk NBPARALLEL=24 PKGNG=1 PKGNAME=nauty-2.4r2 PKG_DELETE=/usr/local/sbin/pkg delete -y -f PKG_ADD=/usr/local/sbin/pkg add PWD=/usr/local/poudriere/data/packages/head-default/All MASTERNAME=head-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre SKIPSANITY=0 LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nauty DOCSDIR=/usr/local/share/doc/nauty EXAMPLESDIR=/usr/local/share/examples/nauty WWWDIR=/usr/local/www/nauty ETCDIR=/usr/local/etc/nauty --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=yes ---End make.conf--- ===> Cleaning for nauty-2.4r2 =======================<phase: check-config >============================ ========================================================================= =======================<phase: pkg-depends >============================ ===> nauty-2.4r2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_1.txz Installing pkg-1.1.4_1... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of nauty-2.4r2 ========================================================================= =======================<phase: fetch-depends >============================ ========================================================================= =======================<phase: fetch >============================ ===> Fetching all distfiles required by nauty-2.4r2 for building ========================================================================= =======================<phase: checksum >============================ ===> Fetching all distfiles required by nauty-2.4r2 for building => SHA256 Checksum OK for nauty24r2.tar.gz. ========================================================================= =======================<phase: extract-depends>============================ ========================================================================= =======================<phase: extract >============================ ===> Fetching all distfiles required by nauty-2.4r2 for building ===> Extracting for nauty-2.4r2 => SHA256 Checksum OK for nauty24r2.tar.gz. ========================================================================= =======================<phase: patch-depends >============================ ========================================================================= =======================<phase: patch >============================ ===> Patching for nauty-2.4r2 ========================================================================= =======================<phase: build-depends >============================ ========================================================================= =======================<phase: lib-depends >============================ ========================================================================= =======================<phase: configure >============================ ===> Configuring for nauty-2.4r2 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/nauty/work/nauty24r2/configure configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd10.0 checking host system type... amd64-portbld-freebsd10.0 checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed CFLAGS=-O2 -pipe -fno-strict-aliasing MORECFLAGS= checking for sys/wait.h that is POSIX.1 compatible... (cached) yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for stddef.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/wait.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for errno.h... (cached) yes checking for pid_t... (cached) yes checking if malloc is declared in stdlib.h or malloc.h... 1 checking if ftell is declared in stdio.h... 1 checking if fdopen is declared in stdio.h... 1 checking if popen is declared in stdio.h... 1 checking if putenv is declared in stdlib.h... 1 checking if setenv is declared in stdlib.h... 1 checking if INFINITY is declared in math.h... 1 checking for int... (cached) yes checking size of int... 4 checking for long... (cached) yes checking size of long... 8 checking for long long... yes checking size of long long... 8 checking for an ANSI C-conforming const... yes checking for isatty... yes checking for times... yes checking for time... yes checking for gettimeofday... (cached) yes checking for times... (cached) yes checking for getrusage... (cached) yes checking for perror... yes checking for pipe... (cached) yes checking for wait... yes checking for popen... yes checking for putenv... (cached) yes checking for setenv... (cached) yes checking for getc_unlocked... yes checking for flockfile... yes checking for gsort... no checking for sort... sort checking if sort supports the -k switch... 1 configure: creating ./config.status config.status: creating makefile config.status: creating nauty.h config.status: creating naututil.h config.status: creating gtools.h ========================================================================= =======================<phase: build >============================ ===> Building for nauty-2.4r2 cc -c -O2 -pipe -fno-strict-aliasing naututil.c naututil.c:365:53: warning: '&&' within '||' [-Wlogical-op-parentheses] if (w < 0 || w >= n || !digraph && w == v) ~~ ~~~~~~~~~^~~~~~~~~ naututil.c:365:53: note: place parentheses around the '&&' expression to silence this warning if (w < 0 || w >= n || !digraph && w == v) ^ ( ) naututil.c:390:57: warning: '&&' within '||' [-Wlogical-op-parentheses] if (w < 0 || w >= n || !digraph && w == v) ~~ ~~~~~~~~~^~~~~~~~~ naututil.c:390:57: note: place parentheses around the '&&' expression to silence this warning if (w < 0 || w >= n || !digraph && w == v) ^ ( ) 2 warnings generated. cc -c -O2 -pipe -fno-strict-aliasing nauty.c nauty.c:741:39: warning: '&&' within '||' [-Wlogical-op-parentheses] getcanon && comp_canon >= 0)) ~~~~~~~~~^~~~~~~~~~~~~~~~~~ nauty.c:741:39: note: place parentheses around the '&&' expression to silence this warning getcanon && comp_canon >= 0)) ^ ( ) nauty.c:911:17: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 2 warnings generated. cc -c -O2 -pipe -fno-strict-aliasing nautil.c cc -c -O2 -pipe -fno-strict-aliasing nautinv.c nautinv.c:392:35: warning: '&&' within '||' [-Wlogical-op-parentheses] if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue; ~~~~~~~~~~~~~~^~~~~~~~ ~~ nautinv.c:392:35: note: place parentheses around the '&&' expression to silence this warning if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue; ^ ( ) nautinv.c:392:61: warning: '&&' within '||' [-Wlogical-op-parentheses] if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue; ~~ ~~~~~~~~~~~~~~^~~~~~~ nautinv.c:392:61: note: place parentheses around the '&&' expression to silence this warning if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue; ^ ( ) nautinv.c:461:49: warning: '&&' within '||' [-Wlogical-op-parentheses] cellsize[j-h] == si && cellstart[j-h] > st; ) ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ nautinv.c:461:49: note: place parentheses around the '&&' expression to silence this warning cellsize[j-h] == si && cellstart[j-h] > st; ) ^ ( ) 3 warnings generated. cc -c -O2 -pipe -fno-strict-aliasing naugraph.c cc -c -O2 -pipe -fno-strict-aliasing rng.c cc -o dreadnaut -O2 -pipe -fno-strict-aliasing dreadnaut.c naututil.o nauty.o nautil.o nautinv.o naugraph.o rng.o dreadnaut.c:451:17: warning: '&&' within '||' [-Wlogical-op-parentheses] if (minus && nperm == n || !minus && nperm == 0) ~~~~~~^~~~~~~~~~~~~ ~~ dreadnaut.c:451:17: note: place parentheses around the '&&' expression to silence this warning if (minus && nperm == n || !minus && nperm == 0) ^ ( ) dreadnaut.c:451:41: warning: '&&' within '||' [-Wlogical-op-parentheses] if (minus && nperm == n || !minus && nperm == 0) ~~ ~~~~~~~^~~~~~~~~~~~~ dreadnaut.c:451:41: note: place parentheses around the '&&' expression to silence this warning if (minus && nperm == n || !minus && nperm == 0) ^ ( ) 2 warnings generated. cc -O2 -pipe -fno-strict-aliasing nauty.c -o nauty nauty.c:741:39: warning: '&&' within '||' [-Wlogical-op-parentheses] getcanon && comp_canon >= 0)) ~~~~~~~~~^~~~~~~~~~~~~~~~~~ nauty.c:741:39: note: place parentheses around the '&&' expression to silence this warning getcanon && comp_canon >= 0)) ^ ( ) nauty.c:911:17: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ 2 warnings generated. /usr/lib/crt1.o: In function `_start': /usr/src/lib/csu/amd64/crt1.c:(.text+0x14b): undefined reference to `main' /tmp/nauty-NSdyvv.o: In function `nauty': nauty.c:(.text+0x190): undefined reference to `nautil_check' nauty.c:(.text+0x20f): undefined reference to `alloc_error' nauty.c:(.text+0x264): undefined reference to `alloc_error' nauty.c:(.text+0x2b9): undefined reference to `alloc_error' nauty.c:(.text+0x30c): undefined reference to `alloc_error' nauty.c:(.text+0x361): undefined reference to `alloc_error' /tmp/nauty-NSdyvv.o:nauty.c:(.text+0x3b6): more undefined references to `alloc_error' follow /tmp/nauty-NSdyvv.o: In function `nauty': nauty.c:(.text+0xab5): undefined reference to `nautil_freedyn' /tmp/nauty-NSdyvv.o: In function `firstpathnode0': nauty.c:(.text+0xbb1): undefined reference to `alloc_error' nauty.c:(.text+0xc6b): undefined reference to `doref' nauty.c:(.text+0xd3c): undefined reference to `maketargetcell' nauty.c:(.text+0xf6e): undefined reference to `nextelement' nauty.c:(.text+0xff4): undefined reference to `breakout' nauty.c:(.text+0x10e5): undefined reference to `shortprune' nauty.c:(.text+0x11ab): undefined reference to `nextelement' /tmp/nauty-NSdyvv.o: In function `extra_autom': nauty.c:(.text+0x14c0): undefined reference to `writeperm' nauty.c:(.text+0x14d2): undefined reference to `orbjoin' /tmp/nauty-NSdyvv.o: In function `writemarker': nauty.c:(.text+0x1650): undefined reference to `putstring' nauty.c:(.text+0x165f): undefined reference to `itos' nauty.c:(.text+0x166e): undefined reference to `putstring' nauty.c:(.text+0x167f): undefined reference to `putstring' nauty.c:(.text+0x1692): undefined reference to `itos' nauty.c:(.text+0x16a1): undefined reference to `putstring' nauty.c:(.text+0x16b2): undefined reference to `putstring' nauty.c:(.text+0x16cf): undefined reference to `putstring' nauty.c:(.text+0x16de): undefined reference to `itos' nauty.c:(.text+0x16ed): undefined reference to `putstring' nauty.c:(.text+0x16fe): undefined reference to `putstring' nauty.c:(.text+0x171c): undefined reference to `putstring' nauty.c:(.text+0x1723): undefined reference to `labelorg' nauty.c:(.text+0x1732): undefined reference to `itos' nauty.c:(.text+0x1741): undefined reference to `putstring' nauty.c:(.text+0x1752): undefined reference to `putstring' nauty.c:(.text+0x175f): undefined reference to `itos' nauty.c:(.text+0x176e): undefined reference to `putstring' nauty.c:(.text+0x1788): undefined reference to `putstring' nauty.c:(.text+0x1797): undefined reference to `itos' nauty.c:(.text+0x17a6): undefined reference to `putstring' nauty.c:(.text+0x17b7): undefined reference to `putstring' /tmp/nauty-NSdyvv.o: In function `othernode0': nauty.c:(.text+0x182d): undefined reference to `alloc_error' nauty.c:(.text+0x18e8): undefined reference to `doref' nauty.c:(.text+0x1a6d): undefined reference to `maketargetcell' nauty.c:(.text+0x1ad6): undefined reference to `maketargetcell' nauty.c:(.text+0x1d06): undefined reference to `fmperm' nauty.c:(.text+0x1d4b): undefined reference to `writeperm' nauty.c:(.text+0x1d64): undefined reference to `orbjoin' nauty.c:(.text+0x1dfc): undefined reference to `fmperm' nauty.c:(.text+0x1e36): undefined reference to `orbjoin' nauty.c:(.text+0x1e83): undefined reference to `writeperm' nauty.c:(.text+0x1fc3): undefined reference to `fmptn' nauty.c:(.text+0x2053): undefined reference to `shortprune' nauty.c:(.text+0x209b): undefined reference to `nextelement' nauty.c:(.text+0x20d3): undefined reference to `breakout' nauty.c:(.text+0x215b): undefined reference to `shortprune' nauty.c:(.text+0x218e): undefined reference to `longprune' nauty.c:(.text+0x2219): undefined reference to `nextelement' cc: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make: stopped in /wrkdirs/usr/ports/math/nauty/work/nauty24r2 *** Error code 1 Stop. make: stopped in /usr/ports/math/nauty ===> Cleaning for nauty-2.4r2
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