Skip site navigation (1)Skip section navigation (2)
Date:      Thu, 28 Jun 2018 02:18:19 GMT
From:      pkg-fallout@FreeBSD.org
To:        tota@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-i386-default][devel/R-cran-data.table] Failed for R-cran-data.table-1.11.2 in stage
Message-ID:  <201806280218.w5S2IJEJ077529@beefy11.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     tota@FreeBSD.org
Last committer: tota@FreeBSD.org
Ident:          $FreeBSD: head/devel/R-cran-data.table/Makefile 470189 2018-05-17 02:18:52Z tota $
Log URL:        http://beefy11.nyi.freebsd.org/data/head-i386-default/p473483_s335753/logs/R-cran-data.table-1.11.2.log
Build URL:      http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p473483_s335753
Log:

=>> Building devel/R-cran-data.table
build started at Thu Jun 28 02:17:03 UTC 2018
port directory: /usr/ports/devel/R-cran-data.table
package name: R-cran-data.table-1.11.2
building for: FreeBSD head-i386-default-job-15 12.0-CURRENT FreeBSD 12.0-CURRENT 1200069 i386
maintained by: tota@FreeBSD.org
Makefile ident:      $FreeBSD: head/devel/R-cran-data.table/Makefile 470189 2018-05-17 02:18:52Z tota $
Poudriere version: 3.2.7-1-g7087c444
Host OSVERSION: 1200062
Jail OSVERSION: 1200069
Job Id: 15




!!! Jail is newer than host. (Jail: 1200069, Host: 1200062) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1200069
UNAME_v=FreeBSD 12.0-CURRENT 1200069
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.7-1-g7087c444
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
tota@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work  HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-data.table/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work  HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-data.table/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector -fno-strict-alia
 sing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6  -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" R_MOD_DIR=lib/R/library/data.table OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/data.table"  EXAMPLESDIR="share/examples/data.table"  DATADIR="share/data.table"  WWWDIR="www/data.table"  ETCDIR="etc/data.table"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/data.table DOCSDIR=/usr/local/share/doc/data.table EXAMPLESDIR=/usr/local/share/examples/data.table  WWWDIR=/usr/local/www/data.table ETCDIR=/usr/local/etc/data.table
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=12.0-CURRENT
OSREL=12.0
OSVERSION=1200069
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MPL20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   R-cran-data.table-1.11.2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_1.txz
[head-i386-default-job-15] Installing pkg-1.10.5_1...
[head-i386-default-job-15] Extracting pkg-1.10.5_1: .......... done
===>   R-cran-data.table-1.11.2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-data.table-1.11.2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MPL20 accepted by the user
===> Fetching all distfiles required by R-cran-data.table-1.11.2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MPL20 accepted by the user
===> Fetching all distfiles required by R-cran-data.table-1.11.2 for building
=> SHA256 Checksum OK for data.table_1.11.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MPL20 accepted by the user
===> Fetching all distfiles required by R-cran-data.table-1.11.2 for building
===>  Extracting for R-cran-data.table-1.11.2
=> SHA256 Checksum OK for data.table_1.11.2.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for R-cran-data.table-1.11.2
===========================================================================
=======================<phase: build-depends  >============================
===>   R-cran-data.table-1.11.2 depends on file: /usr/local/bin/R - not found
===>   Installing existing package /packages/All/R-3.5.0.txz
[head-i386-default-job-15] Installing R-3.5.0...
[head-i386-default-job-15] `-- Installing cairo-1.14.8_1,2...
[head-i386-default-job-15] |   `-- Installing dri2proto-2.8...
[head-i386-default-job-15] |   `-- Extracting dri2proto-2.8: ....... done
<snip>

FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
	cff:no-stem-darkening=1 \
	autofitter:warping=1

This allows to select, say, the subpixel hinting mode at runtime for a given
application.

The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed).
Message from perl5-5.26.2:

The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
Message from python27-2.7.15:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from ca_root_nss-3.38:

********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
Message from gcc6-6.4.0_7:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc6

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from trousers-0.3.14_2:

To run tcsd automatically, add the following line to /etc/rc.conf:

tcsd_enable="YES"

You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.

If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:

tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
Message from libijs-0.35_5:

===>   NOTICE:

The libijs port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from ghostscript9-agpl-base-9.23_1:

This package installs a script named dvipdf that depends on dvips.  If you
want to use this script you need to install print/tex-dvipsk.
Message from dejavu-2.37:

Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===>   R-cran-data.table-1.11.2 depends on file: /usr/local/bin/R - found
===>   Returning to build of R-cran-data.table-1.11.2
===>   R-cran-data.table-1.11.2 depends on executable: gfortran6 - found
===>   R-cran-data.table-1.11.2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   R-cran-data.table-1.11.2 depends on shared library: libomp.so - found (/usr/local/lib/libomp.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for R-cran-data.table-1.11.2
===========================================================================
=======================<phase: build          >============================
===========================================================================
=======================<phase: run-depends    >============================
===>   R-cran-data.table-1.11.2 depends on file: /usr/local/bin/R - found
===>   R-cran-data.table-1.11.2 depends on executable: gfortran6 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for R-cran-data.table-1.11.2
===>   Generating temporary packing list
* installing *source* package 'data.table' ...
** package 'data.table' successfully unpacked and MD5 sums checked
** libs
gmake[1]: Entering directory '/wrkdirs/usr/ports/devel/R-cran-data.table/work/data.table/src'
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c assign.c -o assign.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c between.c -o between.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c bmerge.c -o bmerge.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c chmatch.c -o chmatch.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c dogroups.c -o dogroups.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fastmean.c -o fastmean.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fcast.c -o fcast.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fmelt.c -o fmelt.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c forder.c -o forder.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c frank.c -o frank.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fread.c -o fread.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c freadR.c -o freadR.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fsort.c -o fsort.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fwrite.c -o fwrite.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c fwriteR.c -o fwriteR.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c gsumm.c -o gsumm.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c ijoin.c -o ijoin.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c init.c -o init.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c inrange.c -o inrange.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c nqrecreateindices.c -o nqrecreateindices.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c openmp-utils.c -o openmp-utils.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c quickselect.c -o quickselect.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c rbindlist.c -o rbindlist.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c reorder.c -o reorder.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c shift.c -o shift.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c subset.c -o subset.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c transpose.c -o transpose.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c uniqlist.c -o uniqlist.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c vecseq.c -o vecseq.o
cc -I"/usr/local/lib/R/include" -DNDEBUG   -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include  -fopenmp -fpic  -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -c wrappers.c -o wrappers.o
cc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector -o data.table.so assign.o between.o bmerge.o chmatch.o dogroups.o fastmean.o fcast.o fmelt.o forder.o frank.o fread.o freadR.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o subset.o transpose.o uniqlist.o vecseq.o wrappers.o -fopenmp -L/usr/local/lib/R/lib -lR
mv data.table.so datatable.so
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi
gmake[1]: Leaving directory '/wrkdirs/usr/ports/devel/R-cran-data.table/work/data.table/src'
installing to /wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table/libs
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for 'data.table' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table/libs/datatable.so':
  /wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table/libs/datatable.so: Undefined symbol "__atomic_load"
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table'
*** Error code 1

Stop.
make: stopped in /usr/ports/devel/R-cran-data.table



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201806280218.w5S2IJEJ077529>