Date: Tue, 2 May 2006 20:25:07 +0800 (CST) From: Yen-Ming Lee <leeym@FreeBSD.org> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/96656: [PATCH] biology/p5-AcePerl: update to 1.89 Message-ID: <20060502122507.25C8BB29CA3@utopia.leeym.com> Resent-Message-ID: <200605021230.k42CUPFf053426@freefall.freebsd.org>
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>Number: 96656
>Category: ports
>Synopsis: [PATCH] biology/p5-AcePerl: update to 1.89
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: update
>Submitter-Id: current-users
>Arrival-Date: Tue May 02 12:30:25 GMT 2006
>Closed-Date:
>Last-Modified:
>Originator: Yen-Ming Lee
>Release: FreeBSD 6.1-RC i386
>Organization:
FreeBSD Taiwan
>Environment:
System: FreeBSD utopia.leeym.com 6.1-RC FreeBSD 6.1-RC #0: Tue Apr 11 08:54:13 CST 2006
>Description:
- Update to 1.89
- refine BROKEN to make portlint happier
- patch to use on Scalar::Util instead of WeakRef
- mark IGNORE under old perl which don't support weak reference
Added file(s):
- files/patch-weaken
Port maintainer (pgollucci@p6m7g8.com) is cc'd.
Generated with FreeBSD Port Tools 0.75
>How-To-Repeat:
>Fix:
--- p5-AcePerl-1.89.patch begins here ---
Index: Makefile
===================================================================
RCS file: /home/pcvs/ports/biology/p5-AcePerl/Makefile,v
retrieving revision 1.13
diff -u -u -r1.13 Makefile
--- Makefile 11 Apr 2005 20:34:36 -0000 1.13
+++ Makefile 2 May 2006 12:22:18 -0000
@@ -6,7 +6,7 @@
#
PORTNAME= AcePerl
-PORTVERSION= 1.83
+PORTVERSION= 1.89
CATEGORIES= biology databases perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN}
MASTER_SITE_SUBDIR= Ace
@@ -15,11 +15,14 @@
MAINTAINER= pgollucci@p6m7g8.com
COMMENT= Perl5 interface to the ACEDB genome database system
-BUILD_DEPENDS= ${SITE_PERL}/${PERL_ARCH}/Digest/MD5.pm:${PORTSDIR}/security/p5-Digest-MD5
-RUN_DEPENDS= ${BUILD_DEPENDS}
+RUN_DEPENDS= ${SITE_PERL}/${PERL_ARCH}/Digest/MD5.pm:${PORTSDIR}/security/p5-Digest-MD5 \
+ ${SITE_PERL}/${PERL_ARCH}/Scalar/Util.pm:${PORTSDIR}/lang/p5-Scalar-List-Utils \
+ ${SITE_PERL}/Cache/Cache.pm:${PORTSDIR}/devel/p5-Cache-Cache
+BUILD_DEPENDS= ${RUN_DEPENDS}
PERL_CONFIGURE= yes
+MAN1= ace.pl.1
MAN3= Ace.3 Ace::Browser::AceSubs.3 Ace::Browser::SearchSubs.3 \
Ace::Browser::SiteDefs.3 Ace::Graphics::Fk.3 \
Ace::Graphics::Glyph.3 Ace::Graphics::Glyph::anchored_arrow.3 \
@@ -42,12 +45,16 @@
.include <bsd.port.pre.mk>
+.if ${PERL_LEVEL} < 500600
+IGNORE= requires Perl 5.6.0
+.endif
+
.if ${ARCH} == "amd64" || ${ARCH} == "ia64"
-BROKEN= "Does not compile on amd64 or ia64 (missing -fPIC)"
+BROKEN= Does not compile on amd64 or ia64 (missing -fPIC)
.endif
post-patch:
@ ${SED} -e 's|XX__CC__XX|${CC}|' < ${FILESDIR}/FREEBSD_DEF \
- > ${WRKSRC}/ace/wmake/FREEBSD_DEF
+ > ${WRKSRC}/acelib/wmake/FREEBSD_DEF
.include <bsd.port.post.mk>
Index: distinfo
===================================================================
RCS file: /home/pcvs/ports/biology/p5-AcePerl/distinfo,v
retrieving revision 1.8
diff -u -u -r1.8 distinfo
--- distinfo 22 Jan 2006 08:20:32 -0000 1.8
+++ distinfo 2 May 2006 12:22:18 -0000
@@ -1,3 +1,3 @@
-MD5 (AcePerl-1.83.tar.gz) = d1cc9e852ce7fb23a0f2eac739b040fb
-SHA256 (AcePerl-1.83.tar.gz) = 58164fff2977f37ad1298492b8ef74dca8adb314611ec99d6ef466f5d55300cc
-SIZE (AcePerl-1.83.tar.gz) = 294151
+MD5 (AcePerl-1.89.tar.gz) = 547da3ca59894e99448408cfe9a8ae6e
+SHA256 (AcePerl-1.89.tar.gz) = f3be1f9d31756761f7e1a6043e86b6b39d746fc6cc2bb52663860c31d4e7d64a
+SIZE (AcePerl-1.89.tar.gz) = 299210
Index: pkg-plist
===================================================================
RCS file: /home/pcvs/ports/biology/p5-AcePerl/pkg-plist,v
retrieving revision 1.7
diff -u -u -r1.7 pkg-plist
--- pkg-plist 24 Oct 2003 12:01:16 -0000 1.7
+++ pkg-plist 2 May 2006 12:22:19 -0000
@@ -1,3 +1,4 @@
+bin/ace.pl
%%SITE_PERL%%/%%PERL_ARCH%%/Ace.pm
%%SITE_PERL%%/%%PERL_ARCH%%/Ace/Browser/AceSubs.pm
%%SITE_PERL%%/%%PERL_ARCH%%/Ace/Browser/GeneSubs.pm
@@ -52,6 +53,7 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/_insert.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/_special_dump.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/_to_ace_date.al
+%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/_xmlNumber.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/add_row.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/add_tree.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Object/asAce.al
@@ -87,10 +89,10 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/autosplit.ix
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/class_count.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/classes.al
-%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/count.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/date.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/date_style.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/datetime.al
+%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/debug.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/fetch_many.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/find.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/freeprotect.al
@@ -106,6 +108,8 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/split.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/status.al
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/timestamps.al
+%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/title.al
+%%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/version.al
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Sequence/Feature
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/Sequence
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Ace/RPC
Index: files/patch-aa
===================================================================
RCS file: /home/pcvs/ports/biology/p5-AcePerl/files/patch-aa,v
retrieving revision 1.2
diff -u -u -r1.2 patch-aa
--- files/patch-aa 13 Aug 2001 11:27:36 -0000 1.2
+++ files/patch-aa 2 May 2006 12:22:19 -0000
@@ -1,5 +1,5 @@
---- ace/wh/mystdlib.h.orig Mon Jul 16 23:04:45 2001
-+++ ace/wh/mystdlib.h Mon Aug 13 12:42:25 2001
+--- acelib/wh/mystdlib.h.orig Mon Jul 16 23:04:45 2001
++++ acelib/wh/mystdlib.h Mon Aug 13 12:42:25 2001
@@ -161,7 +161,8 @@
#endif
@@ -10,8 +10,8 @@
#ifdef WIN32
#include <mbctype.h>
---- ace/wh/mydirent.h.orig Mon Jul 16 23:04:45 2001
-+++ ace/wh/mydirent.h Mon Aug 13 12:41:59 2001
+--- acelib/wh/mydirent.h.orig Mon Jul 16 23:04:45 2001
++++ acelib/wh/mydirent.h Mon Aug 13 12:41:59 2001
@@ -55,7 +55,7 @@
extern char *getwd(char *pathname) ;
#endif /* HP || SOLARIS || WIN32 */
Index: files/patch-ab
===================================================================
RCS file: /home/pcvs/ports/biology/p5-AcePerl/files/patch-ab,v
retrieving revision 1.1
diff -u -u -r1.1 patch-ab
--- files/patch-ab 28 Jul 2000 13:16:10 -0000 1.1
+++ files/patch-ab 2 May 2006 12:22:19 -0000
@@ -1,9 +1,9 @@
---- ace/memsubs.c.orig Mon Jan 11 02:01:29 1999
-+++ ace/memsubs.c Thu Jul 27 17:18:45 2000
+--- acelib/memsubs.c.orig Mon Jan 11 02:01:29 1999
++++ acelib/memsubs.c Thu Jul 27 17:18:45 2000
@@ -21,7 +21,7 @@
#if defined(NEXT) || defined(HP) || defined(MACINTOSH)
extern void* malloc(mysize_t size) ;
- #elif !defined(WIN32)
+ #elif !defined(WIN32) && !defined(DARWIN)
-#include <malloc.h> /* normal machines */
+#include <stdlib.h> /* normal machines */
#endif
Index: files/patch-weaken
===================================================================
RCS file: files/patch-weaken
diff -N files/patch-weaken
--- /dev/null 1 Jan 1970 00:00:00 -0000
+++ files/patch-weaken 2 May 2006 12:22:19 -0000
@@ -0,0 +1,33 @@
+--- Ace.pm.orig Tue May 2 17:32:55 2006
++++ Ace.pm Tue May 2 17:33:12 2006
+@@ -2,7 +2,7 @@
+
+ use strict;
+ use Carp qw(croak carp cluck);
+-use WeakRef;
++use Scalar::Util qw(weaken);
+
+ use vars qw($VERSION @ISA @EXPORT @EXPORT_OK $Error);
+
+--- ChangeLog.orig Tue May 2 17:33:12 2006
++++ ChangeLog Tue May 2 17:33:22 2006
+@@ -1,7 +1,7 @@
+ 1.89 Wed Mar 9 18:25:45 EST 2005
+ 1. Added caching code.
+ 2. Now requires ace binaries 4_9s or later.
+- 3. Requires CACHE::CACHE and WeakRef for caching.
++ 3. Requires CACHE::CACHE and Scalar::Util for caching.
+
+ 1.87 10/3/03
+ 1. Fixed unreadable GIF images produced by recent versions of GifAceServer.
+--- Makefile.PL.orig Tue May 2 17:33:22 2006
++++ Makefile.PL Tue May 2 17:33:32 2006
+@@ -35,7 +35,7 @@
+ 'INC' => "-I$headers",
+ PREREQ_PM => {
+ 'Digest::MD5' => 2.0,
+- 'WeakRef' => 0.01,
++ 'Scalar::Util' => 1,
+ 'Cache::Cache' => 1.03,
+ },
+ 'dist' => {'COMPRESS'=>'gzip -9f',
--- p5-AcePerl-1.89.patch ends here ---
>Release-Note:
>Audit-Trail:
>Unformatted:
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