From owner-freebsd-ports Sat Jun 30 7: 4: 8 2001 Delivered-To: freebsd-ports@hub.freebsd.org Received: from freefall.freebsd.org (unknown [216.136.204.21]) by hub.freebsd.org (Postfix) with ESMTP id 6E3EC37B8FB for ; Sat, 30 Jun 2001 07:04:04 -0700 (PDT) (envelope-from gnats@FreeBSD.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.11.3/8.11.3) id f5UE2hM90867; Sat, 30 Jun 2001 07:02:44 -0700 (PDT) (envelope-from gnats) Received: from cielo.eece.unm.edu (cielo.eece.unm.edu [129.24.24.11]) by hub.freebsd.org (Postfix) with ESMTP id 3E7C037BA36 for ; Sat, 30 Jun 2001 06:55:18 -0700 (PDT) (envelope-from dbader@eece.unm.edu) Received: from pequin.eece.unm.edu ([129.24.24.132]) by cielo.eece.unm.edu with esmtp (Exim 3.22 #1) id 15GLDD-0002zJ-00 for FreeBSD-gnats-submit@freebsd.org; Sat, 30 Jun 2001 07:55:03 -0600 Received: (from dbader@localhost) by pequin.eece.unm.edu (8.9.3+Sun/8.9.3) id HAA02315; Sat, 30 Jun 2001 07:55:03 -0600 (MDT) Message-Id: <200106301355.HAA02315@pequin.eece.unm.edu> Date: Sat, 30 Jun 2001 07:55:03 -0600 (MDT) From: dbader@eece.unm.edu Reply-To: dbader@eece.unm.edu To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.113 Subject: ports/28541: new port: biology/grappa Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk List-ID: List-Archive: (Web Archive) List-Help: (List Instructions) List-Subscribe: List-Unsubscribe: X-Loop: FreeBSD.org >Number: 28541 >Category: ports >Synopsis: new port: biology/grappa >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat Jun 30 07:00:01 PDT 2001 >Closed-Date: >Last-Modified: >Originator: David A. Bader >Release: FreeBSD 4.3-RELEASE i386 >Organization: The University of New Mexico >Environment: System: FreeBSD bean.eece.unm.edu 4.3-RELEASE FreeBSD 4.3-RELEASE #1: Wed May 2 06:51:32 MDT 2001 root@bean.eece.unm.edu:/usr/obj/usr/src/sys/BEAN4 i386 >Description: This is a new port of the GPL'ed biology software GRAPPA, for phylogeny reconstruction. (I am also a co-developer of GRAPPA). >How-To-Repeat: >Fix: IMPORTANT NOTE: This new port depends on an update in the port "math/concorde" that I made earlier today. Once the patches for math/concorde (which I also maintain) are committed, then this biology/grappa port should build like a charm. begin 644 grappa.tgz M'XL(",_8/3L``V=R87!P82YT87(`[5CK;^)&$,]7]J\8)9$N*&!L8Z!!314( M3HX>+V&NZ7U*%[.&56RONS9'Z2G]VSO+XP)I'CJ5X]2K?Q+"7L]K9V9G=W;( MA2_&\\)8TBBBA8.O`;#T2JD$!Z"@/_I?O4"E:%2*)XS^)=9\$7Q-\L54H8_Z)I5-+X[P-/ MQC^BB3O)4[HC'8:NERWKV?@;AFY\CK]5*N.(5=&M`]!WI/]%_,_CG\_GH4WO MF`J\)B0?9V[8"$]GM7';[#3N;^V`[60)'X+`$ MUJ.W_6YW`(F`9,+`%RY-N`A!>(MW5P01JI?X$+I"CI""#R65G,4D#X]D`)S# M\U?_U^MZICM?JOUZIK.M_T;0J:O\OE]+ZOQ<<08?- M(!(RB;&F^CYS%^4V6.4!>$)6,\OD($?0H`G68,GP;U3-9(JZV@/8LO`?PEX[I?Z_5J>11K$A31[`SP9_?/,T_92NKOFZW&;UEKUFF/?_[-^5H\_*=.=1K-_7PAH,GDH^D3M?=?MVCNT8([[%1F) M/`\Q_7R_2E!LL^,,:JW6;:_?10/;]W#\Z:;_SNE?WJ]6)P[T^O95\]?[PI"' MBJ75N8=\[&U_>)(:]Z"/(QXG7\BE6'`6A&BK/0Q^',8C3>6+%MS]E%;__SH> MU?_H;IS',U;`PA>+X9?AE?H/4"XOZ[^AFV;%4.?_HFZF]7\?N&:A"!CT&962 MAF.F(A]#+:3^/.8QT'`$OL]#3^Q4QZOK MOV(MU[]9Q(6O^O]BVO_O">U&"4XVSD,:>D,;_YG%9M$X^Z%LE5VO6!FR,X]Y MNCNDWIDY\KQRT:-GQ;0*?`=X8O\?L=B5N]3Q6O]G6<6'^_^BNO^W=$-/U_\^ ML%SZ57CE'#`-L2^"'I4Q#P2>!-2Y0"03)LGZ=,`2[D+-'PO)DTD0DPQB$5XR MF*"`>,JQ=10>1%)@K@4Q\"#R5VK4S1ZFGQ34G:B;OVA]XB"28?L4)W*Z;$L] M*0)0RD!U5#*&1:[R(1L!#Q=B(AJA4:BVK9J^'-2UMF9K.;B9!S3,@8./==7C MY:"AU=0XE:&8Y6"`SVI2'Q156\LI$;_]5D,%"<4^>`1Q,AW-U02&V/[>18*' M"3(LW9-[\T;1]Z1P-2@G$W24RSWTAS,/(@WJ7*A[RRGNK&/H.?5%OYR#MW1& M.8<3]9;52#,$KIKPJ93H%-2'378.#I<+\Q"P2Q2S&`3.'3W$_HA\G"`PKH*@ M9D[BB+H+#R,E-O1QS(?8OR?89"LN",&G0^:KJ?B,?E2#"S[8Y"/Q5$5@P9-, M:`)BR.9P@D<^D,SCX2I>PLL"15=+C/G4IXO;6`P253Y1S!HAAZM^\Q`2>L>6 M(?:XC)%@)E0(,=OB==!XB,Z!Q7V#B@$&;BK#F.`G+O'C1XRTBKZ21T-LSRelease-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message