Date: Tue, 5 Feb 2019 19:00:37 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r492269 - in head/biology/dsr-pdb: . files Message-ID: <201902051900.x15J0bAO074616@repo.freebsd.org>
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Author: yuri Date: Tue Feb 5 19:00:36 2019 New Revision: 492269 URL: https://svnweb.freebsd.org/changeset/ports/492269 Log: biology/dsr-pdb: Add c++11 flags because boost isn't found without it Also add patches for missing includes that only gcc complains about. PR: 235519 Reported by: Piotr Kubaj <pkubaj@anongoth.pl> Added: head/biology/dsr-pdb/files/patch-include_dsrpdb_Point.h (contents, props changed) head/biology/dsr-pdb/files/patch-lib_Protein__pdb.cc (contents, props changed) Modified: head/biology/dsr-pdb/Makefile Modified: head/biology/dsr-pdb/Makefile ============================================================================== --- head/biology/dsr-pdb/Makefile Tue Feb 5 18:57:26 2019 (r492268) +++ head/biology/dsr-pdb/Makefile Tue Feb 5 19:00:36 2019 (r492269) @@ -2,6 +2,7 @@ PORTNAME= dsr-pdb DISTVERSION= 1.0.3 +DISTVERSIONSUFFIX= 1 CATEGORIES= biology MASTER_SITES= https://graphics.stanford.edu/~drussel/ DISTNAME= ${PORTNAME} @@ -13,12 +14,14 @@ COMMENT= Simple C++ PDB reader (reads the protein desc LICENSE= LGPL21 LICENSE_FILE= ${WRKSRC}/COPYING.txt -USES= gmake libtool tar:tgz +LIB_DEPENDS= libboost_program_options.so:devel/boost-libs + +USES= compiler:c++11-lang gmake libtool localbase:ldflags tar:tgz GNU_CONFIGURE= yes USE_LDCONFIG= yes WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} -CXXFLAGS+= -fPIC +CXXFLAGS+= -fPIC --std=c++11 # libboost_program_options.so isn't found without --std=c++11 post-patch: .for dir in lib tools test Added: head/biology/dsr-pdb/files/patch-include_dsrpdb_Point.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/dsr-pdb/files/patch-include_dsrpdb_Point.h Tue Feb 5 19:00:36 2019 (r492269) @@ -0,0 +1,10 @@ +--- include/dsrpdb/Point.h.orig 2019-02-05 18:18:53 UTC ++++ include/dsrpdb/Point.h +@@ -22,6 +22,7 @@ MA 02111-1307, USA. */ + #define DSR_PDB_POINT_H + #include <iostream> + #include <dsrpdb/config.h> ++#include <assert.h> + + #ifdef PDB_USE_CGAL + #include <CGAL/Exact_predicates_inexact_constructions_kernel.h> Added: head/biology/dsr-pdb/files/patch-lib_Protein__pdb.cc ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/dsr-pdb/files/patch-lib_Protein__pdb.cc Tue Feb 5 19:00:36 2019 (r492269) @@ -0,0 +1,10 @@ +--- lib/Protein_pdb.cc.orig 2019-02-05 18:17:52 UTC ++++ lib/Protein_pdb.cc +@@ -23,6 +23,7 @@ MA 02111-1307, USA. */ + #include "pdb_utils.h" + #include <dsrpdb_internal/Error_logger.h> + #include <sstream> ++#include <string.h> + + namespace dsrpdb { +
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