From nobody Sun Jun 9 09:18:16 2024 X-Original-To: ports-bugs@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Vxq9N4qz5z5Nxh7 for ; Sun, 09 Jun 2024 09:18:16 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Vxq9N3pP5z4yMg for ; Sun, 9 Jun 2024 09:18:16 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1717924696; a=rsa-sha256; cv=none; b=cZ9ckvN2lhh/qwlssvF3hlLlfG7ahBwKO5kQrHH7cj9yCwsGBhOjj3BZiJj0DXL/EUXv4o /6BCtg0DUd/e0IbRzdAQsLoLpzUouQODuh6KSCLoxMXJjBuND5rE0xqI4gxoEpfQq8dLB5 uHzgpmWCElX0/Oed/q3xJO5StRu3R3hH23WflL87BDyUj+z+qKhLcb1d2Q2Y6KDe/0pkgy /RVoLJToLCpP69cOX1+9aYyBydvICzYp8nL5VrYbKjL8Vl0Cm37E5DZekNOwi+Xr9efezy poGFmG6l7Kd4siBC3ZOBbW63z3P8ymQQNzTCM2i8X8EcfQ2hbh4EZxI753ai7Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1717924696; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=1iyST3DRQIAswqBuWTI+Sj/8ohfH4UMIS91cskCUock=; b=ogOH60WW2v5yA+fm3hrOIzcVPtPEAaDr6TnK+uWSNecYbkaWqrN8Pqill8GXs/Yo1XUQbj ydrWEeHMqeuB80y+L4BeEkm0SebTS7+4OltiuJ41o8Th91UlGB4b9vf2NihHFBoidzXhtF VzbU8SP9FRE7XFEMGsgw7Vneha2iQD4RQwpTObzOPszRCpp89qCsUmWVC1KwbgWMr7aaC+ VHq5Zz2wheEqiN8pbHj6bfh0Fs33uuyTfS0SmkrJCPR4I0O84VZc9beKunz+iritkIO2a5 v4CDmj9cupReziqG/0zhf/bFB3U3see+JjEh4P3ZR1kxdj+rUH/mlPc+GAzl4g== Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2610:1c1:1:606c::50:1d]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Vxq9N3J2DzcTR for ; Sun, 9 Jun 2024 09:18:16 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.5]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id 4599IGMh016604 for ; Sun, 9 Jun 2024 09:18:16 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id 4599IGDS016602 for ports-bugs@FreeBSD.org; Sun, 9 Jun 2024 09:18:16 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 279606] misc/orange3: reading data from files broken due to "numpy" library mismatch Date: Sun, 09 Jun 2024 09:18:16 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: hannes_11@fantasymail.de X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: yuri@freebsd.org X-Bugzilla-Flags: maintainer-feedback? X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter flagtypes.name Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated List-Id: Ports bug reports List-Archive: https://lists.freebsd.org/archives/freebsd-ports-bugs List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: freebsd-ports-bugs@freebsd.org Sender: owner-freebsd-ports-bugs@FreeBSD.org MIME-Version: 1.0 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D279606 Bug ID: 279606 Summary: misc/orange3: reading data from files broken due to "numpy" library mismatch Product: Ports & Packages Version: Latest Hardware: amd64 OS: Any Status: New Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: yuri@freebsd.org Reporter: hannes_11@fantasymail.de Flags: maintainer-feedback?(yuri@freebsd.org) Assignee: yuri@freebsd.org Orange 3.29 can no longer read data from CSV files and regular (Orange) fil= es due to a version mismatch in the Python "numpy" library. Orange 3.29 expect= s an older library than currently in the package collection. Apparently, in a newer Orange version (3.36) the problem is fixed, see: https://github.com/biolab/orange3/issues/5765 Is it possible to update the "misc/orange3" port to the latest version? Tha= nk you. ERROR:Orange.widgets.data.owfile:Cannot parse dataset /usr/local/lib/python3.9/site-packages/Orange/datasets/iris.tab: Cannot cast ufunc '__contains__ (vectorized)' output from dtype('O') to dtype('bool') w= ith casting rule 'same_kind' Traceback (most recent call last): File "/usr/local/lib/python3.9/site-packages/Orange/data/io.py", line 166= , in read data =3D self.data_table(reader) File "/usr/local/lib/python3.9/site-packages/Orange/data/io_base.py", line 409, in data_table return builder.create_table() File "/usr/local/lib/python3.9/site-packages/Orange/data/io_base.py", line 206, in create_table self.create_columns() File "/usr/local/lib/python3.9/site-packages/Orange/data/io_base.py", line 223, in create_columns column =3D creator(self.data, col, values=3Dtype_, offset=3Dself.offset) File "/usr/local/lib/python3.9/site-packages/Orange/data/io_base.py", line 251, in _cont_column orig_vals, namask =3D _TableBuilder._values_mask(data, col) File "/usr/local/lib/python3.9/site-packages/Orange/data/io_base.py", line 310, in _values_mask return values, isnastr(values) File "/usr/local/lib/python3.9/site-packages/Orange/data/io_util.py", line 112, in isnastr return __isnastr(arr, out=3Dout) numpy.core._exceptions._UFuncOutputCastingError: Cannot cast ufunc '__contains__ (vectorized)' output from dtype('O') to dtype('bool') with casting rule 'same_kind' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/local/lib/python3.9/site-packages/Orange/widgets/data/owfile.p= y", line 366, in _try_load data =3D self.reader.read() File "/usr/local/lib/python3.9/site-packages/Orange/data/io.py", line 186= , in read raise ValueError('Cannot parse dataset {}: {}'.format(self.filename, error)) from error ValueError: Cannot parse dataset /usr/local/lib/python3.9/site-packages/Orange/datasets/iris.tab: Cannot cast ufunc '__contains__ (vectorized)' output from dtype('O') to dtype('bool') w= ith casting rule 'same_kind' --=20 You are receiving this mail because: You are the assignee for the bug.=