Date: Fri, 5 Feb 2021 01:52:12 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - main-armv7-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.11.0_1 in configure Message-ID: <202102050152.1151qCOf044996@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jwb@FreeBSD.org Ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 561233 2021-01-11 17:17:35Z jwb $ Log URL: http://beefy12.nyi.freebsd.org/data/main-armv7-default/p562626_sb42a2ea55/logs/ncbi-blast+-2.11.0_1.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=main-armv7-default&build=p562626_sb42a2ea55 Log: =>> Building biology/ncbi-blast+ build started at Fri Feb 5 01:51:03 UTC 2021 port directory: /usr/ports/biology/ncbi-blast+ package name: ncbi-blast+-2.11.0_1 building for: FreeBSD main-armv7-default-job-04 14.0-CURRENT FreeBSD 14.0-CURRENT 1400001 arm maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 561233 2021-01-11 17:17:35Z jwb $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300134 Jail OSVERSION: 1400001 Job Id: 04 !!! Jail is newer than host. (Jail: 1400001, Host: 1300134) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1400001 UNAME_v=FreeBSD 14.0-CURRENT 1400001 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_I NSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: armv7-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ncbi-blast+-2.11.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.2.txz [main-armv7-default-job-04] Installing pkg-1.16.2... [main-armv7-default-job-04] Extracting pkg-1.16.2: .......... done ===> ncbi-blast+-2.11.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.11.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.11.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.11.0_1 for building <snip> [main-armv7-default-job-04] `-- Extracting ca_root_nss-3.58: ........ done [main-armv7-default-job-04] `-- Installing gmp-6.2.1... [main-armv7-default-job-04] `-- Extracting gmp-6.2.1: .......... done [main-armv7-default-job-04] `-- Installing libidn2-2.3.0_1... [main-armv7-default-job-04] | `-- Installing libunistring-0.9.10_1... [main-armv7-default-job-04] | `-- Extracting libunistring-0.9.10_1: .......... done [main-armv7-default-job-04] `-- Extracting libidn2-2.3.0_1: .......... done [main-armv7-default-job-04] `-- Installing libtasn1-4.16.0_1... [main-armv7-default-job-04] `-- Extracting libtasn1-4.16.0_1: .......... done [main-armv7-default-job-04] `-- Installing nettle-3.6... [main-armv7-default-job-04] `-- Extracting nettle-3.6: .......... done [main-armv7-default-job-04] `-- Installing p11-kit-0.23.22... [main-armv7-default-job-04] | `-- Installing bash-completion-2.11,2... [main-armv7-default-job-04] | | `-- Installing bash-5.1.4_1... [main-armv7-default-job-04] | | `-- Extracting bash-5.1.4_1: .......... done [main-armv7-default-job-04] | `-- Extracting bash-completion-2.11,2: .......... done [main-armv7-default-job-04] | `-- Installing glib-2.66.4_1,1... [main-armv7-default-job-04] | | `-- Installing libiconv-1.16... [main-armv7-default-job-04] | | `-- Extracting libiconv-1.16: .......... done [main-armv7-default-job-04] | | `-- Installing libxml2-2.9.10_2... [main-armv7-default-job-04] | | `-- Extracting libxml2-2.9.10_2: .......... done [main-armv7-default-job-04] | `-- Extracting glib-2.66.4_1,1: .......... done No schema files found: doing nothing. [main-armv7-default-job-04] `-- Extracting p11-kit-0.23.22: .......... done [main-armv7-default-job-04] `-- Installing trousers-0.3.14_3... [main-armv7-default-job-04] | `-- Installing tpm-emulator-0.7.4_2... ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. [main-armv7-default-job-04] | `-- Extracting tpm-emulator-0.7.4_2: ......... done ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. [main-armv7-default-job-04] `-- Extracting trousers-0.3.14_3: .......... done [main-armv7-default-job-04] Extracting gnutls-3.6.15: .......... done ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> ncbi-blast+-2.11.0_1 depends on shared library: libgnutls.so - found (/usr/local/lib/libgnutls.so) ===> Returning to build of ncbi-blast+-2.11.0_1 ===> ncbi-blast+-2.11.0_1 depends on shared library: libtspi.so - found (/usr/local/lib/libtspi.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libidn2.so - found (/usr/local/lib/libidn2.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libnettle.so - found (/usr/local/lib/libnettle.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libhogweed.so - found (/usr/local/lib/libhogweed.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libtasn1.so - found (/usr/local/lib/libtasn1.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libp11-kit.so - found (/usr/local/lib/libp11-kit.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libgcrypt.so - not found ===> Installing existing package /packages/All/libgcrypt-1.8.7.txz [main-armv7-default-job-04] Installing libgcrypt-1.8.7... [main-armv7-default-job-04] `-- Installing libgpg-error-1.41... [main-armv7-default-job-04] `-- Extracting libgpg-error-1.41: .......... done [main-armv7-default-job-04] Extracting libgcrypt-1.8.7: .......... done ===> ncbi-blast+-2.11.0_1 depends on shared library: libgcrypt.so - found (/usr/local/lib/libgcrypt.so) ===> Returning to build of ncbi-blast+-2.11.0_1 ===> ncbi-blast+-2.11.0_1 depends on shared library: libgpg-error.so - found (/usr/local/lib/libgpg-error.so) ===> ncbi-blast+-2.11.0_1 depends on shared library: libsqlite3.so - not found ===> Installing existing package /packages/All/sqlite3-3.34.1,1.txz [main-armv7-default-job-04] Installing sqlite3-3.34.1,1... [main-armv7-default-job-04] `-- Installing libedit-3.1.20191231,1... [main-armv7-default-job-04] `-- Extracting libedit-3.1.20191231,1: .......... done [main-armv7-default-job-04] Extracting sqlite3-3.34.1,1: .......... done ===> ncbi-blast+-2.11.0_1 depends on shared library: libsqlite3.so - found (/usr/local/lib/libsqlite3.so) ===> Returning to build of ncbi-blast+-2.11.0_1 ===> ncbi-blast+-2.11.0_1 depends on shared library: libuv.so - not found ===> Installing existing package /packages/All/libuv-1.40.0.txz [main-armv7-default-job-04] Installing libuv-1.40.0... [main-armv7-default-job-04] Extracting libuv-1.40.0: .......... done ===> ncbi-blast+-2.11.0_1 depends on shared library: libuv.so - found (/usr/local/lib/libuv.so) ===> Returning to build of ncbi-blast+-2.11.0_1 ===> ncbi-blast+-2.11.0_1 depends on shared library: libnghttp2.so - not found ===> Installing existing package /packages/All/libnghttp2-1.42.0.txz [main-armv7-default-job-04] Installing libnghttp2-1.42.0... [main-armv7-default-job-04] Extracting libnghttp2-1.42.0: .......... done ===> ncbi-blast+-2.11.0_1 depends on shared library: libnghttp2.so - found (/usr/local/lib/libnghttp2.so) ===> Returning to build of ncbi-blast+-2.11.0_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for ncbi-blast+-2.11.0_1 configure: loading site script /usr/ports/Templates/config.site configure: creating cache config.cache checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... armv7-portbld-freebsd14.0 checking host system type... armv7-portbld-freebsd14.0 checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... /nxb-bin/usr/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for armv7-portbld-freebsd14.0-gcc... no checking for gcc... no checking for armv7-portbld-freebsd14.0-cc... no checking for cc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking how to run the C preprocessor... cc -E checking whether we are using the GNU C++ compiler... yes checking whether /nxb-bin/usr/bin/c++ accepts -g... yes adjusted C compiler: /nxb-bin/usr/bin/cc adjusted C++ compiler: /nxb-bin/usr/bin/c++ checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for minix/config.h... (cached) no checking whether it is safe to define __EXTENSIONS__... yes checking whether /nxb-bin/usr/bin/cc has an option to export all symbols... no checking whether /nxb-bin/usr/bin/cc supports -Wl,--{en,dis}able-new-dtags... no checking whether /nxb-bin/usr/bin/cc has an option to discard unneeded shared libraries... no checking whether /nxb-bin/usr/bin/cc has an option to link in whole static archives... no checking whether /nxb-bin/usr/bin/c++ supports -stdlib=libc++... no checking whether _LIBCPP_VERSION is declared... yes checking how to enable C++ '14 features in /nxb-bin/usr/bin/c++ ... no configure: error: Please upgrade to a compiler supporting C++ '14, such as GCC 5 or newer. ===> Script "configure" failed unexpectedly. Please report the problem to jwb@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.11.0+-src/c++/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-blast+
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