Date: Tue, 25 Sep 2018 18:11:35 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r480687 - in head/science: . bagel bagel/files Message-ID: <201809251811.w8PIBZaF084461@repo.freebsd.org>
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Author: yuri Date: Tue Sep 25 18:11:34 2018 New Revision: 480687 URL: https://svnweb.freebsd.org/changeset/ports/480687 Log: New port: science/bagel: Brilliantly Advanced General Electronic-structure Library Added: head/science/bagel/ head/science/bagel/Makefile (contents, props changed) head/science/bagel/distinfo (contents, props changed) head/science/bagel/files/ head/science/bagel/files/patch-src_Makefile.am (contents, props changed) head/science/bagel/pkg-descr (contents, props changed) head/science/bagel/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Tue Sep 25 17:56:49 2018 (r480686) +++ head/science/Makefile Tue Sep 25 18:11:34 2018 (r480687) @@ -29,6 +29,7 @@ SUBDIR += atom SUBDIR += atompaw SUBDIR += avogadro + SUBDIR += bagel SUBDIR += bddsolve SUBDIR += bft SUBDIR += bodr Added: head/science/bagel/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/bagel/Makefile Tue Sep 25 18:11:34 2018 (r480687) @@ -0,0 +1,52 @@ +# $FreeBSD$ + +PORTNAME= bagel +DISTVERSIONPREFIX= v +DISTVERSION= 1.1.2-21 +DISTVERSIONSUFFIX= -g2a9472a50 +CATEGORIES= science +DIST_SUBDIR= ${PORTNAME}${PKGNAMESUFFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Brilliantly Advanced General Electronic-structure Library + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/COPYING + +BROKEN_i386= error: static_assert failed "size_t is assumed to be the same size as unsigned long long" + +LIB_DEPENDS= libboost_serialization.so:devel/boost-libs \ + libcblas.so:math/cblas + +USES= autoreconf fortran gmake libtool localbase python:build +GNU_CONFIGURE= yes +CONFIGURE_ARGS= --datarootdir=${DATADIR} +USE_GITHUB= yes +GH_ACCOUNT= nubakery +USE_LDCONFIG= yes + +OPTIONS_DEFINE= MPI LIBXC SCALAPACK SMITH # SLATER (needs a separate lib) +OPTIONS_DEFAULT= MPI LIBXC SCALAPACK SMITH + +MPI_CONFIGURE_ON= --with-mpi=openmpi +MPI_CONFIGURE_OFF= --with-mpi=no +MPI_LIB_DEPENDS= libmpicxx.so:net/mpich # openmpi option erroneously links to mpich (due to a name clash) + +LIBXC_DESC= Build DFT with libxc +LIBXC_CONFIGURE_WITH= libxc +LIBXC_LIB_DEPENDS= libxc.so:science/libxc + +SCALAPACK_DESC= Use ScaLapack library for parallelized linear algebra +SCALAPACK_CONFIGURE_ENABLE= libxc +SCALAPACK_MAKE_ARGS= EXTRA_LIBS="-lcblas" +SCALAPACK_MAKE_ARGS_OFF= EXTRA_LIBS="-lcblas -llapack -lblas" # -llapack -lblas are a replacement of libscalapack +SCALAPACK_LIB_DEPENDS= libscalapack.so:math/scalapack +SCALAPACK_LIB_DEPENDS_OFF= liblapack.so:math/lapack \ + libblas.so:math/blas +SCALAPACK_IMPLIES= MPI + +SMITH_DESC= Compile SMITH generated code +SMITH_CONFIGURE_ENABLE= smith +SMITH_IMPLIES= MPI + +.include <bsd.port.mk> Added: head/science/bagel/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/bagel/distinfo Tue Sep 25 18:11:34 2018 (r480687) @@ -0,0 +1,3 @@ +TIMESTAMP = 1537894347 +SHA256 (bagel/nubakery-bagel-v1.1.2-21-g2a9472a50_GH0.tar.gz) = 63829bd536de5d3e780eea84bc4e7d4b57bf21706509de3325db6697971dd084 +SIZE (bagel/nubakery-bagel-v1.1.2-21-g2a9472a50_GH0.tar.gz) = 41466284 Added: head/science/bagel/files/patch-src_Makefile.am ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/bagel/files/patch-src_Makefile.am Tue Sep 25 18:11:34 2018 (r480687) @@ -0,0 +1,11 @@ +--- src/Makefile.am.orig 2018-09-25 05:30:51 UTC ++++ src/Makefile.am +@@ -1,7 +1,7 @@ + SUBDIRS = util molecule integral df opt grad pt2 wfn scf multi smith prop ci response asd mat1e basis + AM_CXXFLAGS=-I$(top_srcdir) + +-INTLIBS = opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la ++INTLIBS = opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la $(EXTRA_LIBS) + + lib_LTLIBRARIES = libbagel.la + libbagel_la_SOURCES = run_bagel.cc static.cc Added: head/science/bagel/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/bagel/pkg-descr Tue Sep 25 18:11:34 2018 (r480687) @@ -0,0 +1,7 @@ +BAGEL is a parallel electronic-structure program licensed under the GNU General +Public License. + +BAGEL is intended for use by researchers performing quantum chemistry +computations. + +WWW: https://nubakery.org/ Added: head/science/bagel/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/bagel/pkg-plist Tue Sep 25 18:11:34 2018 (r480687) @@ -0,0 +1,63 @@ +bin/BAGEL +include/bagel.h +lib/libbagel.so +lib/libbagel.so.0 +lib/libbagel.so.0.0.0 +%%DATADIR%%/3-21g.json +%%DATADIR%%/6-31g.json +%%DATADIR%%/ano-rcc.json +%%DATADIR%%/aug-cc-pcv5z.json +%%DATADIR%%/aug-cc-pcvdz-dk.json +%%DATADIR%%/aug-cc-pcvdz.json +%%DATADIR%%/aug-cc-pcvqz-dk.json +%%DATADIR%%/aug-cc-pcvqz.json +%%DATADIR%%/aug-cc-pcvtz-dk.json +%%DATADIR%%/aug-cc-pcvtz.json +%%DATADIR%%/aug-cc-pv5z.json +%%DATADIR%%/aug-cc-pv6z.json +%%DATADIR%%/aug-cc-pvdz.json +%%DATADIR%%/aug-cc-pvqz.json +%%DATADIR%%/aug-cc-pvtz.json +%%DATADIR%%/aug-cc-pwcv5z.json +%%DATADIR%%/aug-cc-pwcvdz.json +%%DATADIR%%/aug-cc-pwcvqz.json +%%DATADIR%%/aug-cc-pwcvtz.json +%%DATADIR%%/cc-pcv5z.json +%%DATADIR%%/cc-pcvdz.json +%%DATADIR%%/cc-pcvqz.json +%%DATADIR%%/cc-pcvtz.json +%%DATADIR%%/cc-pv5z-jkfit.json +%%DATADIR%%/cc-pv5z-ri.json +%%DATADIR%%/cc-pv5z.json +%%DATADIR%%/cc-pv6z.json +%%DATADIR%%/cc-pvdz-dk.json +%%DATADIR%%/cc-pvdz-jkfit.json +%%DATADIR%%/cc-pvdz-ri.json +%%DATADIR%%/cc-pvdz.json +%%DATADIR%%/cc-pvqz-jkfit.json +%%DATADIR%%/cc-pvqz-ri.json +%%DATADIR%%/cc-pvqz.json +%%DATADIR%%/cc-pvtz-dk.json +%%DATADIR%%/cc-pvtz-jkfit.json +%%DATADIR%%/cc-pvtz-ri.json +%%DATADIR%%/cc-pvtz.json +%%DATADIR%%/complete.json +%%DATADIR%%/d-aug-cc-pv5z.json +%%DATADIR%%/d-aug-cc-pvdz.json +%%DATADIR%%/d-aug-cc-pvqz.json +%%DATADIR%%/d-aug-cc-pvtz.json +%%DATADIR%%/def2-SVP-2c-ecp.json +%%DATADIR%%/def2-SVP-ecp.json +%%DATADIR%%/ecp10mdf.json +%%DATADIR%%/ecp28mdf.json +%%DATADIR%%/ecp46mdf.json +%%DATADIR%%/ecp60mdf.json +%%DATADIR%%/ecp78mdf.json +%%DATADIR%%/lanl2dz-ecp.json +%%DATADIR%%/qzvpp-jkfit.json +%%DATADIR%%/qzvpp.json +%%DATADIR%%/sto-3g.json +%%DATADIR%%/svp-jkfit.json +%%DATADIR%%/svp.json +%%DATADIR%%/tzvpp-jkfit.json +%%DATADIR%%/tzvpp.json
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