From owner-svn-ports-all@freebsd.org Tue Feb 23 19:09:02 2021 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id E934954EEAD; Tue, 23 Feb 2021 19:09:02 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DlT9p6DXBz4T3N; Tue, 23 Feb 2021 19:09:02 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id C88A91EC0A; Tue, 23 Feb 2021 19:09:02 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 11NJ92AV039840; Tue, 23 Feb 2021 19:09:02 GMT (envelope-from jrm@FreeBSD.org) Received: (from jrm@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 11NJ926K039838; Tue, 23 Feb 2021 19:09:02 GMT (envelope-from jrm@FreeBSD.org) Message-Id: <202102231909.11NJ926K039838@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jrm set sender to jrm@FreeBSD.org using -f From: Joseph Mingrone Date: Tue, 23 Feb 2021 19:09:02 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r566423 - head/biology/hyphy X-SVN-Group: ports-head X-SVN-Commit-Author: jrm X-SVN-Commit-Paths: head/biology/hyphy X-SVN-Commit-Revision: 566423 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 23 Feb 2021 19:09:03 -0000 Author: jrm Date: Tue Feb 23 19:09:01 2021 New Revision: 566423 URL: https://svnweb.freebsd.org/changeset/ports/566423 Log: biology/hyphy: Update to 2.5.28 https://github.com/veg/hyphy/releases/tag/2.5.28 Modified: head/biology/hyphy/Makefile (contents, props changed) head/biology/hyphy/distinfo (contents, props changed) head/biology/hyphy/pkg-plist (contents, props changed) Modified: head/biology/hyphy/Makefile ============================================================================== --- head/biology/hyphy/Makefile Tue Feb 23 18:51:40 2021 (r566422) +++ head/biology/hyphy/Makefile Tue Feb 23 19:09:01 2021 (r566423) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.5.27 +DISTVERSION= 2.5.28 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org Modified: head/biology/hyphy/distinfo ============================================================================== --- head/biology/hyphy/distinfo Tue Feb 23 18:51:40 2021 (r566422) +++ head/biology/hyphy/distinfo Tue Feb 23 19:09:01 2021 (r566423) @@ -1,3 +1,3 @@ -TIMESTAMP = 1611746257 -SHA256 (veg-hyphy-2.5.27_GH0.tar.gz) = 5642610df1fbf6d63993eac9a3a68a8c8ff70137520635a7c65f245c315f0f47 -SIZE (veg-hyphy-2.5.27_GH0.tar.gz) = 5339088 +TIMESTAMP = 1614104471 +SHA256 (veg-hyphy-2.5.28_GH0.tar.gz) = 617d5426eefbb093ea34d68d0d80559305ae790119335b2ccc1ddbbeda8fc407 +SIZE (veg-hyphy-2.5.28_GH0.tar.gz) = 5340293 Modified: head/biology/hyphy/pkg-plist ============================================================================== --- head/biology/hyphy/pkg-plist Tue Feb 23 18:51:40 2021 (r566422) +++ head/biology/hyphy/pkg-plist Tue Feb 23 19:09:01 2021 (r566423) @@ -387,6 +387,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf +%%DATADIR%%/TemplateBatchFiles/libv3/models/codon/MSS.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/frequencies.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/model_functions.bf %%DATADIR%%/TemplateBatchFiles/libv3/models/parameters.bf