Date: Wed, 28 May 2014 07:58:11 -0400 From: "John W. O'Brien" <john@saltant.com> To: Irjohn Junus <i.junus@gmail.com> Cc: python@freebsd.org, Jimmy Olgeni <olgeni@freebsd.org> Subject: Re: math/py-numpy cannot satisfy libgfortran dependency on libgcc_s/GCC_4.6.0 [WAS: Re: py27-pandas-0.13.1_1 conflict with py27-MySQLdb-1.2.3_4] Message-ID: <5385CF53.10608@saltant.com> In-Reply-To: <CALXkR%2B-6_2k4pD7-Ln6e-PbgFTKriRXSrqOpd=UVbwppi=dpvg@mail.gmail.com> References: <CALXkR%2B8ivP3m2aJN%2Bm88Sz%2B4BodAxnYioBvgUotFZf_-TVPLgg@mail.gmail.com> <536C40B0.2060705@saltant.com> <CALXkR%2B_r4kG8CHO8R2MOsGHK4JDeEMa28MN4rzZ1hAtd%2BzAu4g@mail.gmail.com> <53718C14.1040807@saltant.com> <CALXkR%2B-6_2k4pD7-Ln6e-PbgFTKriRXSrqOpd=UVbwppi=dpvg@mail.gmail.com>
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This is an OpenPGP/MIME signed message (RFC 4880 and 3156) --QLPrh6JwJHKsEpdsil8auDjr0ExSmxXob Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable On 5/18/14 12:30 AM, Irjohn Junus wrote: > Thank you for looking at this. Apologies for my late reply it's been > crazy busy at work lately. I completely understand. As you can probably tell, my situation is simila= r. > Here's answers to your questions: >> 1. What is the rpath stored in your copy of those numpy files? >> That is, what is the output from >> >> cd /usr/local/lib/python2.7/site-packages/numpy/linalg >> readelf -d _umath_linalg.so | grep RPATH >> readelf -d lapack_lite.so | grep RPATH >> >> ? > readelf -d _umath_linalg.so | grep RPATH > 0x000000000000000f (RPATH) Library rpath: > [/usr/local/lib/gcc47] > readelf -d lapack_lite.so | grep RPATH > 0x000000000000000f (RPATH) Library rpath: > [/usr/local/lib/gcc47] That looks correct to me. >> 2. What is the contents of >> /usr/local/lib/python2.7/site-packages/numpy/distutils/site.cfg on = your >> machine? > cat /usr/local/lib/python2.7/site-packages/numpy/distutils/site.cfg > [DEFAULT] > lapack_type=3Datlas > library_dirs =3D > /usr/lib:/usr/local/lib:/usr/local/lib/gcc47/gcc/x86_64-portbld-freebsd= 9.1/4.7.3/../../../ > include_dirs =3D > /usr/include:/usr/local/include:/usr/local/include/suitesparse > src_dirs =3D /usr/local/src > # search static libraries (.a) in preference to shared ones (.so) > search_static_first =3D 0 > [atlas] > library_dirs =3D > /usr/local/lib:/usr/local/lib/gcc47/gcc/x86_64-portbld-freebsd9.1/4.7.3= /../../../ > atlas_libs =3D lapack, blas Just like mine. >> 2. What is the contents of /etc/make.conf on your machine? > cat /etc/make.conf > # added by use.perl 2013-03-25 18:12:09 > PERL_VERSION=3D5.12.4 > #WITH_MPM=3Dworker Totally innocuous. >> 4. How to you install and upgrade your ports? Build from source >> by hand? Build from source with the help of portmaster, >> poudriere, etc? >> Install binary packages with pkg_* or ports-mgmt/pkg (pkgng)? > 4. > I use portmaster exclusively, to install: > portmaster --packages-build --delete-build-only port-name > to upgrade: > portmaster --dwv port-name I'm taking a stab in the dark here. Based on the '-w' option, might there be any stale libs hanging around in /usr/local/lib/compat/pkg? I haven't been able to reproduce this, so I'm not sure which tree to bark up next. -John --QLPrh6JwJHKsEpdsil8auDjr0ExSmxXob Content-Type: application/pgp-signature; name="signature.asc" Content-Description: OpenPGP digital signature Content-Disposition: attachment; filename="signature.asc" -----BEGIN PGP SIGNATURE----- Version: GnuPG/MacGPG2 v2.0.22 (Darwin) iQEcBAEBCgAGBQJThc9XAAoJEORay8JGGICYjwoIAJoMRU8woJaMx6S4lM4y1XUm KwNyW4wltLRnPijz5tInWOapd6ZtM2Nd+INpFmxCfgFs6mrUmaW79bPEINl761XI Oh3KgYaKhULEXFsOBXqWpABxDl9vJuY7ogf6rYemXedmZ0CO15CKT9sFEhUKLpjW 7xBqi10nGI7CFzpAmkOiFxwfQqox+enQDcA3DqcYDRhp+jeLWwDRW8JTFRZcx+Q9 FZYJiscgH5v4idISJS+rG/rjixgwfxjMDqslPu1iTvmz14NlgegVffrObELLsIiS qmjdxg+DFvL2eLezzISnCdsyTrePHWHf2BWu9J7G6VQ1TbB4LXlGZJ+a385d61k= =x50t -----END PGP SIGNATURE----- --QLPrh6JwJHKsEpdsil8auDjr0ExSmxXob--
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