Date: Wed, 25 Aug 2021 20:28:36 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: cc5fdc14d943 - main - biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0 Message-ID: <202108252028.17PKSau0010856@gitrepo.freebsd.org>
next in thread | raw e-mail | index | archive | help
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=cc5fdc14d94309a7dbae28f96689202781c1e299 commit cc5fdc14d94309a7dbae28f96689202781c1e299 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2021-08-25 19:54:09 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2021-08-25 20:28:23 +0000 biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0 --- biology/ncbi-cxx-toolkit/Makefile | 25 ++++++++++++++++++------- biology/ncbi-cxx-toolkit/distinfo | 6 +++--- 2 files changed, 21 insertions(+), 10 deletions(-) diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index d8ab6730f753..4148f33e2d63 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,7 +1,7 @@ PORTNAME= ncbi-cxx-toolkit -DISTVERSION= 22_0_0 +DISTVERSION= 25_0_0 CATEGORIES= biology science devel -MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/ +MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2021/Aug_18_2021/ DISTNAME= ncbi_cxx--${DISTVERSION} MAINTAINER= yuri@FreeBSD.org @@ -10,25 +10,36 @@ COMMENT= NCBI C++ Toolkit LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE -LIB_DEPENDS= liblmdb.so:databases/lmdb \ +LIB_DEPENDS= libcdd.so:math/cddlib \ + liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre RUN_DEPENDS= bash:shells/bash USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg -SHEBANG_FILES= src/app/blast/get_species_taxids.sh src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl src/app/winmasker/windowmasker_2.2.22_adapter.py USE_XORG= x11 xpm +SHEBANG_FILES= src/app/blast/get_species_taxids.sh +SHEBANG_GLOB= *.pl *.py + GNU_CONFIGURE= yes -CONFIGURE_ARGS= --without-debug --with-dll --without-static +CONFIGURE_ARGS= --without-debug --with-dll --without-static \ + --without-vdb + +WRKSRC= ${WRKDIR}/public-${DISTVERSION:S/_/./g}-2021-08-18-11-21-29 post-install: # strip @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} # remove an empty directory - @${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg + #@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg + @${RMDIR} \ + ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms/formats \ + ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms # remove the conflicting file - @${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so + @${RM} \ + ${STAGEDIR}${PREFIX}/lib/libcdd.so \ + ${STAGEDIR}${PREFIX}/lib/liblmdb.so # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ ${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \ diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index 5ded16bce9b4..d85ae212645c 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1600993142 -SHA256 (ncbi_cxx--22_0_0.tar.gz) = ef39429bbc7f13c44c0d327432d9cfb430f9f20d10d825e6b2c4ddd7ccce457f -SIZE (ncbi_cxx--22_0_0.tar.gz) = 56042079 +TIMESTAMP = 1629878632 +SHA256 (ncbi_cxx--25_0_0.tar.gz) = 0158971349839b69ea96b3b88db774ac1692befd9910c040a00186e841ef5ed5 +SIZE (ncbi_cxx--25_0_0.tar.gz) = 95801019
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202108252028.17PKSau0010856>