Date: Wed, 3 Apr 2019 05:01:11 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r497621 - in head/science/coot: . files Message-ID: <201904030501.x3351BQl068651@repo.freebsd.org>
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Author: yuri Date: Wed Apr 3 05:01:11 2019 New Revision: 497621 URL: https://svnweb.freebsd.org/changeset/ports/497621 Log: science/coot: Update 0.8.9.1 -> 0.8.9.2 * Add goocanvas dependency * Add fftw dependency Reported by: portscout Modified: head/science/coot/Makefile head/science/coot/distinfo head/science/coot/files/patch-src_cc-interface-image.hh head/science/coot/pkg-plist Modified: head/science/coot/Makefile ============================================================================== --- head/science/coot/Makefile Wed Apr 3 04:41:20 2019 (r497620) +++ head/science/coot/Makefile Wed Apr 3 05:01:11 2019 (r497621) @@ -1,8 +1,7 @@ # $FreeBSD$ PORTNAME= coot -DISTVERSION= 0.8.9.1 -PORTREVISION= 2 +DISTVERSION= 0.8.9.2 CATEGORIES= science MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/source/releases/ \ https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/${PORTNAME}/dependencies/:data @@ -15,11 +14,13 @@ COMMENT= Crystallographic Object-Oriented Toolkit LICENSE= LGPL3 LICENSE_FILE= ${WRKSRC}/COPYING +BUILD_DEPENDS= fftw>0:math/fftw LIB_DEPENDS= libccp4c.so:science/libccp4 \ libclipper-core.so:science/clipper \ libcurl.so:ftp/curl \ libfontconfig.so:x11-fonts/fontconfig \ libfreetype.so:print/freetype2 \ + libgoocanvas.so:graphics/goocanvas \ libgtkglext-x11-1.0.so:x11-toolkits/gtkglext \ libgsl.so:math/gsl \ libmmdb2.so:science/mmdb2 \ @@ -31,7 +32,7 @@ RUN_DEPENDS= bash:shells/bash USES= desktop-file-utils fortran gettext-runtime gl gmake gnome libtool localbase:ldflags pkgconfig python:2.7 shebangfix sqlite SHEBANG_FILES= src/coot.in GNU_CONFIGURE= yes -CONFIGURE_ARGS= --enable-shared --disable-static +CONFIGURE_ARGS= --enable-shared --disable-static --with-goocanvas-prefix=${LOCALBASE} USE_GNOME= atk cairo gdkpixbuf2 glib20 gtk20 libartlgpl2 libgnomecanvas pango pangox-compat USE_GL= gl glu glut USE_XORG= ice sm x11 xmu xt Modified: head/science/coot/distinfo ============================================================================== --- head/science/coot/distinfo Wed Apr 3 04:41:20 2019 (r497620) +++ head/science/coot/distinfo Wed Apr 3 05:01:11 2019 (r497621) @@ -1,6 +1,6 @@ -TIMESTAMP = 1531013796 -SHA256 (coot/coot-0.8.9.1.tar.gz) = 51b6faef11177a8ab682fbe28448f935ae1252ad53b4efa31339ff658a63ff94 -SIZE (coot/coot-0.8.9.1.tar.gz) = 19360553 +TIMESTAMP = 1554259683 +SHA256 (coot/coot-0.8.9.2.tar.gz) = f24ed258e43ea31452b54c62649c071aa15f356d077dce0dab94eb04f27a6625 +SIZE (coot/coot-0.8.9.2.tar.gz) = 19635513 SHA256 (coot/refmac-monomer-library.tar.gz) = 03562eec612103a48bd114cfe0d171943e88f94b84610d16d542cda138e5f36b SIZE (coot/refmac-monomer-library.tar.gz) = 37439851 SHA256 (coot/reference-structures.tar.gz) = 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a Modified: head/science/coot/files/patch-src_cc-interface-image.hh ============================================================================== --- head/science/coot/files/patch-src_cc-interface-image.hh Wed Apr 3 04:41:20 2019 (r497620) +++ head/science/coot/files/patch-src_cc-interface-image.hh Wed Apr 3 05:01:11 2019 (r497621) @@ -1,7 +1,8 @@ ---- src/cc-interface-image.hh.orig 2018-07-08 02:10:49 UTC +--- src/cc-interface-image.hh.orig 2018-06-08 16:50:29 UTC +++ src/cc-interface-image.hh -@@ -1,4 +1,5 @@ +@@ -1,5 +1,6 @@ + #ifdef USE_PYTHON +#include <Python.h> // make a png given the info in text_info_dict Modified: head/science/coot/pkg-plist ============================================================================== --- head/science/coot/pkg-plist Wed Apr 3 04:41:20 2019 (r497620) +++ head/science/coot/pkg-plist Wed Apr 3 05:01:11 2019 (r497621) @@ -24,11 +24,15 @@ include/coot/ccp4mg-utils/mgtree.h include/coot/ccp4mg-utils/ppmutil.h include/coot/ccp4mg-utils/quat.h include/coot/compat/coot-getopt.h +include/coot/compat/coot-sysdep.h +include/coot/compat/getopt_int.h +include/coot/compat/sleep-fixups.h include/coot/coords/Bond_lines.h include/coot/coords/Bond_lines_ext.h include/coot/coords/Cartesian.h include/coot/coords/coot-close.hh include/coot/coords/cos-sin.h +include/coot/coords/loop-path.hh include/coot/coords/mmdb-crystal.h include/coot/coords/mmdb-extras.h include/coot/coords/mmdb.h @@ -89,10 +93,12 @@ include/coot/ideal/lograma.h include/coot/ideal/model-bond-deltas.hh include/coot/ideal/parallel-planes.hh include/coot/ideal/pepflip.hh +include/coot/ideal/phi-psi.hh include/coot/ideal/regularize-minimol.hh include/coot/ideal/simple-restraint.hh include/coot/ideal/test-indexing.hh include/coot/ideal/torsion-bonds.hh +include/coot/ideal/zo-rama.hh include/coot/lbg/alerts.hh include/coot/lbg/graphics-c-interface-functions.hh include/coot/lbg/lbg-drag-and-drop.hh @@ -260,6 +266,9 @@ lib/libcootilus.so.0.0.0 %%PYTHON_SITELIBDIR%%/coot/acedrg_link.py %%PYTHON_SITELIBDIR%%/coot/acedrg_link.pyc %%PYTHON_SITELIBDIR%%/coot/acedrg_link.pyo +%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.py +%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.pyc +%%PYTHON_SITELIBDIR%%/coot/add_linked_cho.pyo %%PYTHON_SITELIBDIR%%/coot/americanisms.py %%PYTHON_SITELIBDIR%%/coot/americanisms.pyc %%PYTHON_SITELIBDIR%%/coot/americanisms.pyo @@ -299,6 +308,9 @@ lib/libcootilus.so.0.0.0 %%PYTHON_SITELIBDIR%%/coot/coot_lsq.py %%PYTHON_SITELIBDIR%%/coot/coot_lsq.pyc %%PYTHON_SITELIBDIR%%/coot/coot_lsq.pyo +%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.py +%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.pyc +%%PYTHON_SITELIBDIR%%/coot/coot_output_to_window.pyo %%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.py %%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.pyc %%PYTHON_SITELIBDIR%%/coot/coot_toolbuttons.pyo @@ -320,6 +332,9 @@ lib/libcootilus.so.0.0.0 %%PYTHON_SITELIBDIR%%/coot/filter.py %%PYTHON_SITELIBDIR%%/coot/filter.pyc %%PYTHON_SITELIBDIR%%/coot/filter.pyo +%%PYTHON_SITELIBDIR%%/coot/find_baddies.py +%%PYTHON_SITELIBDIR%%/coot/find_baddies.pyc +%%PYTHON_SITELIBDIR%%/coot/find_baddies.pyo %%PYTHON_SITELIBDIR%%/coot/fitting.py %%PYTHON_SITELIBDIR%%/coot/fitting.pyc %%PYTHON_SITELIBDIR%%/coot/fitting.pyo @@ -14126,6 +14141,7 @@ share/applications/coot.desktop %%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-2.tab %%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-3.tab %%DATADIR%%/link-by-torsion-to-FUC-core-ALPHA1-6.tab +%%DATADIR%%/link-by-torsion-to-NAG-core-NAG-SER.tab %%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-2.tab %%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-3.tab %%DATADIR%%/link-by-torsion-to-pyranose-core-ALPHA1-6.tab @@ -14183,13 +14199,14 @@ share/applications/coot.desktop %%DATADIR%%/pixmaps/connect-to-oca.svg %%DATADIR%%/pixmaps/connect-to-usf.svg %%DATADIR%%/pixmaps/connect-to-world.svg -%%DATADIR%%/pixmaps/coot-0.8.9.1.png +%%DATADIR%%/pixmaps/coot-0.8.9.2.png %%DATADIR%%/pixmaps/coot-favicon.png %%DATADIR%%/pixmaps/coot-icon.png %%DATADIR%%/pixmaps/coot-save-symm.png %%DATADIR%%/pixmaps/coot-save.png %%DATADIR%%/pixmaps/crosshairs.png %%DATADIR%%/pixmaps/crosshairs.svg +%%DATADIR%%/pixmaps/curlew-long.png %%DATADIR%%/pixmaps/delete.png %%DATADIR%%/pixmaps/delete.svg %%DATADIR%%/pixmaps/density-fit.svg @@ -14250,6 +14267,13 @@ share/applications/coot.desktop %%DATADIR%%/pixmaps/pointer-distances.svg %%DATADIR%%/pixmaps/probe-clash.svg %%DATADIR%%/pixmaps/radacina_handcuffs-small.svg +%%DATADIR%%/pixmaps/rama2_all.png +%%DATADIR%%/pixmaps/rama2_gly.png +%%DATADIR%%/pixmaps/rama2_ileval.png +%%DATADIR%%/pixmaps/rama2_non_gly_pro.png +%%DATADIR%%/pixmaps/rama2_non_gly_pro_pre_pro_ileval.png +%%DATADIR%%/pixmaps/rama2_pre_pro.png +%%DATADIR%%/pixmaps/rama2_pro.png %%DATADIR%%/pixmaps/rama_all.png %%DATADIR%%/pixmaps/rama_gly.png %%DATADIR%%/pixmaps/rama_non_gly_pro.png @@ -14391,6 +14415,7 @@ share/applications/coot.desktop %%DATADIR%%/scheme/0-auto-rot.scm %%DATADIR%%/scheme/3d-generator-import.scm %%DATADIR%%/scheme/acedrg-link.scm +%%DATADIR%%/scheme/add-linked-cho.scm %%DATADIR%%/scheme/americanisms.scm %%DATADIR%%/scheme/background-demo.scm %%DATADIR%%/scheme/bit.scm @@ -14415,6 +14440,7 @@ share/applications/coot.desktop %%DATADIR%%/scheme/fascinating-things.scm %%DATADIR%%/scheme/file-utils.scm %%DATADIR%%/scheme/filter.scm +%%DATADIR%%/scheme/find-baddies.scm %%DATADIR%%/scheme/fitting.scm %%DATADIR%%/scheme/gap.scm %%DATADIR%%/scheme/generic-objects.scm
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