Date: Sat, 27 Aug 2016 03:19:24 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-mips-default][science/silo] Failed for silo-4.10_3 in build Message-ID: <201608270319.u7R3JOsw068842@beefy7.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/science/silo/Makefile 413700 2016-04-20 20:42:39Z sunpoet $ Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p420499_s304514/logs/silo-4.10_3.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p420499_s304514 Log: ====>> Building science/silo build started at Sat Aug 27 03:08:56 UTC 2016 port directory: /usr/ports/science/silo building for: FreeBSD head-mips-default-job-05 12.0-CURRENT FreeBSD 12.0-CURRENT r304514 mips maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/silo/Makefile 413700 2016-04-20 20:42:39Z sunpoet $ Poudriere version: 3.1.14 Host OSVERSION: 1100113 Jail OSVERSION: 1200002 !!! Jail is newer than host. (Jail: 1200002, Host: 1100113) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 12.0-CURRENT r304514 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=mips LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=silo-4.10_3 OSREL=12.0 _OSRELEASE=12.0-CURRENT PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool MASTERNAME=head-mips-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1200002 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for silo-4.10_3: FORTRAN=off: Fortran language support HDF5=on: HDF-5 data format support PYTHON=off: Python bindings or support QT4=off: Qt 4 toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-shared --disable-static --disable-fortran --with-hdf5=/usr/local/include,/usr/local/lib --disable-pythonmodule --disable-silex --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/silo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/silo/work HOME=/wrkdirs/usr/ports/science/silo/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/silo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/silo/work HOME=/wrkdirs/usr/ports/science/silo/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- FORTRAN="@comment " NO_FORTRAN="" HDF5="" NO_HDF5="@comment " SUFX_HDF5="h5" PYTHON="@comment " NO_PYTHON="" QT4="@comment " NO_QT4="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/silo" EXAMPLESDIR="share/examples/silo" DATADIR="share/silo" WWWDIR="www/silo" ETCDIR="etc/silo" --End PLIST_SUB-- --SUB_LIST-- FORTRAN="@comment " NO_FORTRAN="" HDF5="" NO_HDF5="@comment " PYTHON="@comment " NO_PYTHON="" QT4="@comment " NO_QT4="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/silo DOCSDIR=/usr/local/share/doc/silo EXAMPLESDIR=/usr/local/share/examples/silo WWWDIR=/usr/local/www/silo ETCDIR=/usr/local/etc/silo --End SUB_LIST-- ---Begin make.conf--- MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =======================<phase: check-sanity >============================ ===> NOTICE: The silo port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> silo-4.10_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_1.txz [head-mips-default-job-05] Installing pkg-1.8.7_1... [head-mips-default-job-05] Extracting pkg-1.8.7_1: .......... done ===> silo-4.10_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of silo-4.10_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: <snip> checking for hdf5.h... yes checking for H5open... yes checking for a readline compatible library... -lreadline checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether readline supports history... yes checking history.h usability... no checking history.h presence... no checking for history.h... no checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating SiloWindows/Makefile config.status: creating svn_bin/Makefile config.status: creating config/Makefile config.status: creating config-site/Makefile config.status: creating docs/Makefile config.status: creating src/Makefile config.status: creating src/score/Makefile config.status: creating src/pdb/Makefile config.status: creating src/silo/Makefile config.status: creating src/silo/silo.h config.status: creating src/debug/Makefile config.status: creating src/netcdf/Makefile config.status: creating src/pdb_drv/Makefile config.status: creating src/pdbp_drv/Makefile config.status: creating src/hdf5_drv/Makefile config.status: creating src/taurus/Makefile config.status: creating src/unknown/Makefile config.status: creating src/filters/Makefile config.status: creating tests/Makefile config.status: creating tools/Makefile config.status: creating tools/browser/Makefile config.status: creating tools/python/Makefile config.status: creating tools/silex/Makefile config.status: creating tools/silock/Makefile config.status: creating tools/json/Makefile config.status: creating tools/mapred/Makefile config.status: creating src/libsiloh5.settings config.status: creating config.h config.status: executing tests/atconfig commands config.status: executing depfiles commands config.status: executing libtool commands SUMMARY OF THE Silo with HDF5 CONFIGURATION ================================= Silo Version: 4.10 Configured on: Sat Aug 27 03:09:51 UTC 2016 Configured by: root@head-mips-default-job-05 Configure command: ./configure '--enable-shared' '--disable-static' '--disable-fortran' '--with-hdf5=/usr/local/include,/usr/local/lib' '--disable-pythonmodule' '--disable-silex' '--prefix=/usr/local' '--localstatedir=/var' '--mandir=/usr/local/man' '--infodir=/usr/local/info/' '--build=mips-portbld-freebsd12.0' 'build_alias=mips-portbld-freebsd12.0' 'CXX=/nxb-bin/usr/bin/c++' 'CXXFLAGS=-O2 -pipe -G0 -fno-strict-aliasing ' 'LDFLAGS= -L/usr/local/lib' 'LIBS=' 'CPPFLAGS=-I/usr/local/include' 'CC=/nxb-bin/usr/bin/cc' 'CFLAGS=-O2 -pipe -G0 -fno-strict-aliasing' 'CPP=/nxb-bin/usr/bin/cpp' Host system: mips-portbld-freebsd12.0 Build system: mips-portbld-freebsd12.0 Installation point: /usr/local Source directory: @UsingSrcDir@ Archiver: ar Ranlib: ranlib Configure Summary Compiling Options: C Compiler /nxb-bin/usr/bin/cc CPPFLAGS -I/usr/local/include -I/usr/local/include CFLAGS -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement LDFLAGS -L/usr/local/lib -L/usr/local/lib LIBS -lhdf5 -lm Languages: C++ Compiler /nxb-bin/usr/bin/c++ CXXFLAGS -O2 -pipe -G0 -fno-strict-aliasing Fortran Compiler FCFLAGS FCLIBS Features: Browser @UsingBrowser@ Readline @UsingReadline@ HDF5 @UsingHDF5@ Silex @UsingSilex@ Qt @UsingQt@ Qt moc Compiler Qt CXXFLAGS Qt LIBS Python @UsingPython@ Python Compiler Python CPPFLAGS =========================================================================== =======================<phase: build >============================ ===> Building for silo-4.10_3 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd' gmake all-recursive gmake[2]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd' Making all in . gmake[3]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd' Making all in src gmake[3]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src' /usr/local/bin/gmake all-recursive gmake[4]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src' Making all in score gmake[5]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/score' /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c -o memmove.lo memmove.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c memmove.c -fPIC -DPIC -o .libs/memmove.o mv -f .deps/memmove.Tpo .deps/memmove.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c -o scctla.lo scctla.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c scctla.c -fPIC -DPIC -o .libs/scctla.o mv -f .deps/scctla.Tpo .deps/scctla.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c -o scctl.lo scctl.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c scctl.c -fPIC -DPIC -o .libs/scctl.o mv -f .deps/scctl.Tpo .deps/scctl.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c -o schash.lo schash.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c schash.c -fPIC -DPIC -o .libs/schash.o mv -f .deps/schash.Tpo .deps/schash.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c -o scstr.lo scstr.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c scstr.c -fPIC -DPIC -o .libs/scstr.o mv -f .deps/scstr.Tpo .deps/scstr.Plo /bin/sh ../../libtool --tag=CC --mode=link /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_score.la memmove.lo scctla.lo scctl.lo schash.lo scstr.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_score.a .libs/memmove.o .libs/scctla.o .libs/scctl.o .libs/schash.o .libs/scstr.o libtool: link: ranlib .libs/libsilo_score.a libtool: link: ( cd ".libs" && rm -f "libsilo_score.la" && ln -s "../libsilo_score.la" "libsilo_score.la" ) gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/score' Making all in pdb gmake[5]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb' /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT detect.o -MD -MP -MF .deps/detect.Tpo -c -o detect.o detect.c mv -f .deps/detect.Tpo .deps/detect.Po /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -o detect detect.o ./detect >> pdform.h /usr/local/bin/gmake all-am gmake[6]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb' /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdb.lo -MD -MP -MF .deps/pdb.Tpo -c -o pdb.lo pdb.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdb.lo -MD -MP -MF .deps/pdb.Tpo -c pdb.c -fPIC -DPIC -o .libs/pdb.o mv -f .deps/pdb.Tpo .deps/pdb.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbdir.lo -MD -MP -MF .deps/pdbdir.Tpo -c -o pdbdir.lo pdbdir.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbdir.lo -MD -MP -MF .deps/pdbdir.Tpo -c pdbdir.c -fPIC -DPIC -o .libs/pdbdir.o mv -f .deps/pdbdir.Tpo .deps/pdbdir.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c -o pdbio.lo pdbio.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c pdbio.c -fPIC -DPIC -o .libs/pdbio.o mv -f .deps/pdbio.Tpo .deps/pdbio.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbmm.lo -MD -MP -MF .deps/pdbmm.Tpo -c -o pdbmm.lo pdbmm.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbmm.lo -MD -MP -MF .deps/pdbmm.Tpo -c pdbmm.c -fPIC -DPIC -o .libs/pdbmm.o mv -f .deps/pdbmm.Tpo .deps/pdbmm.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbx.lo -MD -MP -MF .deps/pdbx.Tpo -c -o pdbx.lo pdbx.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbx.lo -MD -MP -MF .deps/pdbx.Tpo -c pdbx.c -fPIC -DPIC -o .libs/pdbx.o mv -f .deps/pdbx.Tpo .deps/pdbx.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdconv.lo -MD -MP -MF .deps/pdconv.Tpo -c -o pdconv.lo pdconv.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdconv.lo -MD -MP -MF .deps/pdconv.Tpo -c pdconv.c -fPIC -DPIC -o .libs/pdconv.o mv -f .deps/pdconv.Tpo .deps/pdconv.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdlow.lo -MD -MP -MF .deps/pdlow.Tpo -c -o pdlow.lo pdlow.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdlow.lo -MD -MP -MF .deps/pdlow.Tpo -c pdlow.c -fPIC -DPIC -o .libs/pdlow.o mv -f .deps/pdlow.Tpo .deps/pdlow.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdmemb.lo -MD -MP -MF .deps/pdmemb.Tpo -c -o pdmemb.lo pdmemb.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdmemb.lo -MD -MP -MF .deps/pdmemb.Tpo -c pdmemb.c -fPIC -DPIC -o .libs/pdmemb.o mv -f .deps/pdmemb.Tpo .deps/pdmemb.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdpath.lo -MD -MP -MF .deps/pdpath.Tpo -c -o pdpath.lo pdpath.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdpath.lo -MD -MP -MF .deps/pdpath.Tpo -c pdpath.c -fPIC -DPIC -o .libs/pdpath.o mv -f .deps/pdpath.Tpo .deps/pdpath.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdrdwr.lo -MD -MP -MF .deps/pdrdwr.Tpo -c -o pdrdwr.lo pdrdwr.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdrdwr.lo -MD -MP -MF .deps/pdrdwr.Tpo -c pdrdwr.c -fPIC -DPIC -o .libs/pdrdwr.o mv -f .deps/pdrdwr.Tpo .deps/pdrdwr.Plo /bin/sh ../../libtool --tag=CC --mode=link /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/local/lib -L/usr/local/lib -o libsilo_pdb.la pdb.lo pdbdir.lo pdbio.lo pdbmm.lo pdbx.lo pdconv.lo pdlow.lo pdmemb.lo pdpath.lo pdrdwr.lo -lhdf5 -lm libtool: link: ar cru .libs/libsilo_pdb.a .libs/pdb.o .libs/pdbdir.o .libs/pdbio.o .libs/pdbmm.o .libs/pdbx.o .libs/pdconv.o .libs/pdlow.o .libs/pdmemb.o .libs/pdpath.o .libs/pdrdwr.o libtool: link: ranlib .libs/libsilo_pdb.a libtool: link: ( cd ".libs" && rm -f "libsilo_pdb.la" && ln -s "../libsilo_pdb.la" "libsilo_pdb.la" ) gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb' Making all in silo gmake[5]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo' /usr/local/bin/gmake all-am gmake[6]: Entering directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo' /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT alloc.lo -MD -MP -MF .deps/alloc.Tpo -c -o alloc.lo alloc.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT alloc.lo -MD -MP -MF .deps/alloc.Tpo -c alloc.c -fPIC -DPIC -o .libs/alloc.o mv -f .deps/alloc.Tpo .deps/alloc.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT extface.lo -MD -MP -MF .deps/extface.Tpo -c -o extface.lo extface.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT extface.lo -MD -MP -MF .deps/extface.Tpo -c extface.c -fPIC -DPIC -o .libs/extface.o mv -f .deps/extface.Tpo .deps/extface.Plo /bin/sh ../../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo.lo -MD -MP -MF .deps/silo.Tpo -c -o silo.lo silo.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT silo.lo -MD -MP -MF .deps/silo.Tpo -c silo.c -fPIC -DPIC -o .libs/silo.o silo.c:227: error: field 's' has incomplete type silo.c:257: warning: integer constant is too large for 'long' type silo.c:9200:2: warning: #warning HI AND LO OFFSET NOT VALID IN PRESENCE OF EXPLICIT GHOST LABELS gmake[6]: *** [Makefile:454: silo.lo] Error 1 gmake[6]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo' gmake[5]: *** [Makefile:378: all] Error 2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo' gmake[4]: *** [Makefile:559: all-recursive] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src' gmake[3]: *** [Makefile:442: all] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src' gmake[2]: *** [Makefile:437: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd' gmake[1]: *** [Makefile:366: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd' *** Error code 1 Stop. make: stopped in /usr/ports/science/silo
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