Date: Sat, 28 Oct 2017 14:56:32 GMT From: pkg-fallout@FreeBSD.org To: jrm@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 103amd64-default][math/libRmath] Failed for libRmath-3.4.2 in configure Message-ID: <201710281456.v9SEuWHw099759@beefy6.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Last committer: jrm@FreeBSD.org Ident: $FreeBSD: head/math/libRmath/Makefile 452962 2017-10-27 00:52:41Z jrm $ Log URL: http://beefy6.nyi.freebsd.org/data/103amd64-default/453041/logs/libRmath-3.4.2.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=103amd64-default&build=453041 Log: ====>> Building math/libRmath build started at Sat Oct 28 14:54:35 UTC 2017 port directory: /usr/ports/math/libRmath building for: FreeBSD 103amd64-default-job-24 10.3-RELEASE-p22 FreeBSD 10.3-RELEASE-p22 amd64 maintained by: jrm@FreeBSD.org Makefile ident: $FreeBSD: head/math/libRmath/Makefile 452962 2017-10-27 00:52:41Z jrm $ Poudriere version: 3.1.21-9-gf36c6353 Host OSVERSION: 1200050 Jail OSVERSION: 1003000 Job Id: 24 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1003000 UNAME_v=FreeBSD 10.3-RELEASE-p22 UNAME_r=10.3-RELEASE-p22 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/103amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=libRmath-3.4.2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/103amd64-default/ref/.p/pool MASTERNAME=103amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.21-9-gf36c6353 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for libRmath-3.4.2: ====> Fortran language support: you have to select exactly one of them GFORTRAN=off: Build Fortran source with gfortran FLANG=on: Build Fortran source with flang ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-nls --with-ICU=no --with-cairo=no --with-jpeglib=no --with-libpng=no --with-libtiff=no --with-readline=no --with-tcltk=no --with-x=no --without-libintl-prefix --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_header_iconv_h=no F77="flang" FC="flang" FFLAGS="-O" FCFLAGS="" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/libRmath/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="flang" FC="flang" FFLAGS="-O" FCFLAGS="" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/libRmath/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-isystem /us r/local/include" LDFLAGS=" -L/usr/local/flang/lib -lflang -lexecinfo -fstack-protector" LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- RMATH_SOVERSION="3.4" OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/libRmath" EXAMPLESDIR="share/examples/libRmath" DATADIR="share/libRmath" WWWDIR="www/libRmath" ETCDIR="etc/libRmath" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libRmath DOCSDIR=/usr/local/share/doc/libRmath EXAMPLESDIR=/usr/local/share/examples/libRmath WWWDIR=/usr/local/www/libRmath ETCDIR=/usr/local/etc/libRmath --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=amd64 CONFIGURE_MAX_CMD_LEN=262144 HAVE_COMPAT_IA32_KERN=YES OPSYS=FreeBSD OSREL=10.3 OSVERSION=1003000 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.9|1.6\+|1.7\+|1.8\+|1.9\+ _OSRELEASE=10.3-RELEASE-p22 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited sbsize (bytes, -b) unlimited pseudo-terminals (-p) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> libRmath-3.4.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [103amd64-default-job-24] Installing pkg-1.10.1... [103amd64-default-job-24] Extracting pkg-1.10.1: .......... done ===> libRmath-3.4.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libRmath-3.4.2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-3.4.2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-3.4.2 for building => SHA256 Checksum OK for R-3.4.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-3.4.2 for building ===> Extracting for libRmath-3.4.2 => SHA256 Checksum OK for R-3.4.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libRmath-3.4.2 =========================================================================== =======================<phase: build-depends >============================ ===> libRmath-3.4.2 depends on executable: flang - not found ===> Installing existing package /packages/All/flang-5.0.20171019_1.txz [103amd64-default-job-24] Installing flang-5.0.20171019_1... [103amd64-default-job-24] `-- Installing flang-clang-5.0.20171019_1... [103amd64-default-job-24] | `-- Installing libedit-3.1.20170329_2,1... [103amd64-default-job-24] | `-- Extracting libedit-3.1.20170329_2,1: .......... done [103amd64-default-job-24] | `-- Installing libxml2-2.9.4... [103amd64-default-job-24] | `-- Extracting libxml2-2.9.4: .......... done [103amd64-default-job-24] | `-- Installing llvm50-5.0.0_4... [103amd64-default-job-24] | | `-- Installing perl5-5.24.3... [103amd64-default-job-24] | | `-- Extracting perl5-5.24.3: .......... done [103amd64-default-job-24] | | `-- Installing python27-2.7.14_1... [103amd64-default-job-24] | | `-- Installing gettext-runtime-0.19.8.1_1... [103amd64-default-job-24] | | | `-- Installing indexinfo-0.3... [103amd64-default-job-24] | | | `-- Extracting indexinfo-0.3: .... done [103amd64-default-job-24] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [103amd64-default-job-24] | | `-- Installing libffi-3.2.1_1... [103amd64-default-job-24] | | `-- Extracting libffi-3.2.1_1: .......... done [103amd64-default-job-24] | | `-- Installing readline-7.0.3... [103amd64-default-job-24] | | `-- Extracting readline-7.0.3: .......... done [103amd64-default-job-24] | | `-- Extracting python27-2.7.14_1: .......... done [103amd64-default-job-24] | `-- Extracting llvm50-5.0.0_4: .......... done [103amd64-default-job-24] `-- Extracting flang-clang-5.0.20171019_1: .......... done [103amd64-default-job-24] Extracting flang-5.0.20171019_1: .......... done Message from perl5-5.24.3: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: <snip> checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for minix/config.h... 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(cached) 262144 checking how to convert amd64-portbld-freebsd10.3 file names to amd64-portbld-freebsd10.3 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd10.3 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking for gawk... (cached) /usr/bin/awk checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... 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(cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether cc supports -c -o FILE.lo... yes checking for cc option to support OpenMP... unsupported checking how to get verbose linking output from flang... -v checking for Fortran 77 libraries of flang... -L/usr/local/flang/lib -L/usr/lib -lflangmain -lflang -lflangrti -lompstub -lexecinfo checking how to get verbose linking output from cc... -v checking for C libraries of cc... -L/usr/local/flang/lib -L/usr/lib -lflang -lexecinfo -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether flang appends underscores to external names... yes checking whether flang appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether flang and cc agree on int and double... yes checking whether flang and cc agree on double complex... yes checking for flang option to support OpenMP... -mp checking whether c++ accepts -M for generating dependencies... yes checking for c++ option to support OpenMP... unsupported checking whether we can compute ObjC Make dependencies... yes, using cc -MM checking for ObjC runtime library... checking whether cc accepts -fobjc-exceptions... yes checking for xmkmf... no configure: WARNING: I could not determine FPICFLAGS. configure: error: See the file doc/html/R-admin.html for more information. ===> Script "configure" failed unexpectedly. Please report the problem to jrm@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/math/libRmath/work/R-3.4.2/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/math/libRmath
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