Date: Tue, 19 Feb 2019 22:20:11 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r493397 - in head/biology/pbcopper: . files Message-ID: <201902192220.x1JMKBXO039131@repo.freebsd.org>
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Author: jwb Date: Tue Feb 19 22:20:11 2019 New Revision: 493397 URL: https://svnweb.freebsd.org/changeset/ports/493397 Log: biology/pbcopper: Upgrade to 0.4.1 release In preparation for biology/unanimity upgrade Added: head/biology/pbcopper/files/patch-meson__options.txt (contents, props changed) Deleted: head/biology/pbcopper/files/patch-cmake_pbcopper-gitsha1.cmake Modified: head/biology/pbcopper/Makefile head/biology/pbcopper/distinfo head/biology/pbcopper/pkg-plist Modified: head/biology/pbcopper/Makefile ============================================================================== --- head/biology/pbcopper/Makefile Tue Feb 19 22:09:23 2019 (r493396) +++ head/biology/pbcopper/Makefile Tue Feb 19 22:20:11 2019 (r493397) @@ -1,8 +1,7 @@ # $FreeBSD$ PORTNAME= pbcopper -DISTVERSION= g20180413 -PORTREVISION= 3 +DISTVERSION= 0.4.1 # Test with biology/unanimity before upgrading! CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -13,17 +12,17 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libboost_regex.so:devel/boost-libs -USES= cmake compiler:c++14-lang -# Although there are a couple releases, git describe --tags does not work -# so we cannot use the usual USE_GITHUB tools here. +# Meson needs BOOST_ROOT=${LOCALBASE} +# https://github.com/mesonbuild/meson/issues/2239 +USES= compiler:c++14-lang localbase meson +USE_LDCONFIG= yes USE_GITHUB= yes GH_ACCOUNT= PacificBiosciences -GH_TAGNAME= 17ef457a0dbe1894a8d17af7ddba01a6261bf117 -do-install: - ${INSTALL_DATA} ${BUILD_WRKSRC}/lib/*.a ${STAGEDIR}${PREFIX}/lib - cd ${WRKSRC}/include && ${COPYTREE_SHARE} . ${STAGEDIR}${PREFIX}/include - ${MV} ${STAGEDIR}${PREFIX}/include/meson.build \ - ${STAGEDIR}${PREFIX}/include/pbcopper +post-install: + ${RLN} ${STAGEDIR}${PREFIX}/lib/libpbcopper.so.${PORTVERSION} \ + ${STAGEDIR}${PREFIX}/lib/libpbcopper.so.0.4 + ${RLN} ${STAGEDIR}${PREFIX}/lib/libpbcopper.so.${PORTVERSION} \ + ${STAGEDIR}${PREFIX}/lib/libpbcopper.so.0 .include <bsd.port.mk> Modified: head/biology/pbcopper/distinfo ============================================================================== --- head/biology/pbcopper/distinfo Tue Feb 19 22:09:23 2019 (r493396) +++ head/biology/pbcopper/distinfo Tue Feb 19 22:20:11 2019 (r493397) @@ -1,3 +1,3 @@ -TIMESTAMP = 1524500014 -SHA256 (PacificBiosciences-pbcopper-g20180413-17ef457a0dbe1894a8d17af7ddba01a6261bf117_GH0.tar.gz) = 13f006d53334a0538657e0ba5c6e02f811f1901cd25fce220fc9011726ffe23f -SIZE (PacificBiosciences-pbcopper-g20180413-17ef457a0dbe1894a8d17af7ddba01a6261bf117_GH0.tar.gz) = 3033636 +TIMESTAMP = 1550453144 +SHA256 (PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz) = 4c8daf6c1a6efe3860a16fb5b6111ebe65221423254819f3a68a400d0a984fcd +SIZE (PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz) = 3095846 Added: head/biology/pbcopper/files/patch-meson__options.txt ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/pbcopper/files/patch-meson__options.txt Tue Feb 19 22:20:11 2019 (r493397) @@ -0,0 +1,7 @@ +--- meson_options.txt.orig 2019-02-17 22:34:29 UTC ++++ meson_options.txt +@@ -1,3 +1,3 @@ + option('build-examples', type : 'boolean', value : true, description : 'Build pbcopper examples') + option('build-docs', type : 'boolean', value : false, description : 'Build pbcopper docs') +-option('tests', type : 'boolean', value : true, description : 'Enable dependencies required for testing') ++option('tests', type : 'boolean', value : false, description : 'Enable dependencies required for testing') Modified: head/biology/pbcopper/pkg-plist ============================================================================== --- head/biology/pbcopper/pkg-plist Tue Feb 19 22:09:23 2019 (r493396) +++ head/biology/pbcopper/pkg-plist Tue Feb 19 22:20:11 2019 (r493397) @@ -1,4 +1,5 @@ include/pbcopper/PbcopperConfig.h +include/pbcopper/PbcopperMakeUnique.h include/pbcopper/align/Seed.h include/pbcopper/align/Seeds.h include/pbcopper/align/internal/Seed-inl.h @@ -23,7 +24,6 @@ include/pbcopper/cli/toolcontract/ResolvedToolContract include/pbcopper/cli/toolcontract/ResourceType.h include/pbcopper/cli/toolcontract/Task.h include/pbcopper/cli/toolcontract/TaskType.h -include/pbcopper/cli/toolcontract/internal/Config-inl.h include/pbcopper/cli/toolcontract/internal/Driver-inl.h include/pbcopper/cli/toolcontract/internal/InputFileType-inl.h include/pbcopper/cli/toolcontract/internal/OutputFileType-inl.h @@ -48,7 +48,6 @@ include/pbcopper/json/JSON.h include/pbcopper/json/internal/json.hpp include/pbcopper/logging/Logging.h include/pbcopper/logging/internal/Logging-inl.h -include/pbcopper/meson.build include/pbcopper/parallel/FireAndForget.h include/pbcopper/parallel/WorkQueue.h include/pbcopper/qgram/Index.h @@ -72,4 +71,8 @@ include/pbcopper/utility/internal/FileUtils-inl.h include/pbcopper/utility/internal/Stopwatch-inl.h include/pbcopper/utility/internal/StringUtils-inl.h include/pbcopper/utility/internal/SystemInfo-inl.h -lib/libpbcopper.a +lib/libpbcopper.so +lib/libpbcopper.so.0 +lib/libpbcopper.so.0.4 +lib/libpbcopper.so.0.4.1 +libdata/pkgconfig/pbcopper.pc
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