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Date:      Sat, 28 Aug 2021 15:00:46 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - main-powerpc64-default][biology/clustal-omega] Failed for clustal-omega-1.2.4 in lib-depends
Message-ID:  <202108281500.17SF0kd0029039@foul1.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Log URL:        http://foul1.nyi.freebsd.org/data/main-powerpc64-default/p8268af35e442_s5a3a8cb01/logs/clustal-omega-1.2.4.log
Build URL:      http://foul1.nyi.freebsd.org/build.html?mastername=main-powerpc64-default&build=p8268af35e442_s5a3a8cb01
Log:

=>> Building biology/clustal-omega
build started at Sat Aug 28 15:00:34 UTC 2021
port directory: /usr/ports/biology/clustal-omega
package name: clustal-omega-1.2.4
building for: FreeBSD main-powerpc64-default-job-13 14.0-CURRENT FreeBSD 14.0-CURRENT 1400032 powerpc
maintained by: jwb@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1400008
Jail OSVERSION: 1400032
Job Id: 13




!!! Jail is newer than host. (Jail: 1400032, Host: 1400008) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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UNAME_r=14.0-CURRENT
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HOME=/root
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PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/main-powerpc64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/clustal-omega/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/clustal-omega/work  HOME=/wrkdirs/usr/ports/biology/clustal-omega/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/clustal-omega/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/clustal-omega/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/clustal-omega/work  HOME=/wrkdirs/usr/ports/biology/clustal-omega/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/clustal-omega/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/clustal-omega"  EXAMPLESDIR="share/examples/clustal-omega"  DATADIR="share/clustal-omega"  WWWDIR="www/clustal-omega"  ETCDIR="etc/clustal-omega"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/clustal-omega DOCSDIR=/usr/local/share/doc/clustal-omega EXAMPLESDIR=/usr/local/share/examples/clustal-omega  WWWDIR=/usr/local/www/clustal-omega ETCDIR=/usr/local/etc/clustal-omega
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
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CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: powerpc64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin
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ARCH=powerpc64
PPC_ABI=ELFv2
OPSYS=FreeBSD
_OSRELEASE=14.0-CURRENT
OSREL=14.0
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PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   clustal-omega-1.2.4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.17.1.pkg
[main-powerpc64-default-job-13] Installing pkg-1.17.1...
[main-powerpc64-default-job-13] Extracting pkg-1.17.1: .......... done
===>   clustal-omega-1.2.4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of clustal-omega-1.2.4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
=> clustal-omega-1.2.4.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
clustal-omega-1.2.4.tar.gz                            1143 kB 1671 kBps    00s
===> Fetching all distfiles required by clustal-omega-1.2.4 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by clustal-omega-1.2.4 for building
=> SHA256 Checksum OK for clustal-omega-1.2.4.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by clustal-omega-1.2.4 for building
===>  Extracting for clustal-omega-1.2.4
=> SHA256 Checksum OK for clustal-omega-1.2.4.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for clustal-omega-1.2.4
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===>   clustal-omega-1.2.4 depends on shared library: libargtable2.so - not found
===>   Installing existing package /packages/All/argtable-2.13_2.pkg
[main-powerpc64-default-job-13] Installing argtable-2.13_2...
[main-powerpc64-default-job-13] Extracting argtable-2.13_2: .......
pkg-static: Fail to extract /usr/local/share/examples/argtable/ls.c from package: Lzma library error: Corrupted input data
[main-powerpc64-default-job-13] Extracting argtable-2.13_2... done

Failed to install the following 1 package(s): /packages/All/argtable-2.13_2.pkg
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/clustal-omega



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