From owner-freebsd-pkg-fallout@freebsd.org Tue Dec 18 10:04:50 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 56554134B3BB for ; Tue, 18 Dec 2018 10:04:50 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id E09648B9AF for ; Tue, 18 Dec 2018 10:04:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 9EF62134B3BA; Tue, 18 Dec 2018 10:04:49 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 6B654134B3B9 for ; Tue, 18 Dec 2018 10:04:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 1F0078B9AD for ; Tue, 18 Dec 2018 10:04:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy15.nyi.freebsd.org (beefy15.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e2]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 0C790254B1 for ; Tue, 18 Dec 2018 10:04:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy15.nyi.freebsd.org (localhost [127.0.0.1]) by beefy15.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id wBIA4m5R064860 for ; Tue, 18 Dec 2018 10:04:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy15.nyi.freebsd.org (8.15.2/8.15.2/Submit) id wBIA4mHQ064859; Tue, 18 Dec 2018 10:04:48 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 18 Dec 2018 10:04:48 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201812181004.wBIA4mHQ064859@beefy15.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 112armv6-quarterly][science/py-pymol] Failed for py27-pymol-2.2.0 in configure X-Rspamd-Queue-Id: 1F0078B9AD X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.99 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_SHORT(-0.99)[-0.992,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US]; NEURAL_HAM_LONG(-1.00)[-0.999,0] X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 18 Dec 2018 10:04:50 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: branches/2018Q4/science/py-pymol/Makefile 479957 2018-09-17 20:48:45Z yuri $ Log URL: http://beefy15.nyi.freebsd.org/data/112armv6-quarterly/487723/logs/py27-pymol-2.2.0.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=112armv6-quarterly&build=487723 Log: =>> Building science/py-pymol build started at Tue Dec 18 10:03:58 UTC 2018 port directory: /usr/ports/science/py-pymol package name: py27-pymol-2.2.0 building for: FreeBSD 112armv6-quarterly-job-13 11.2-RELEASE-p6 FreeBSD 11.2-RELEASE-p6 1102000 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2018Q4/science/py-pymol/Makefile 479957 2018-09-17 20:48:45Z yuri $ Poudriere version: 3.2.8 Host OSVERSION: 1300002 Jail OSVERSION: 1102000 Job Id: 13 ---Begin Environment--- POUDRIEREPATH=/usr/local/bin/poudriere SCRIPTPATH=/usr/local/share/poudriere/bulk.sh OLDPWD=/usr/local/poudriere/data/.m/112armv6-quarterly/ref/.p SCRIPTPREFIX=/usr/local/share/poudriere MASTERNAME=112armv6-quarterly P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/112armv6-quarterly/ref/.p/pool SAVED_TERM= PACKAGE_BUILDING=yes POUDRIERE_BUILD_TYPE=bulk MASTERMNT=/usr/local/poudriere/data/.m/112armv6-quarterly/ref POUDRIERE_VERSION=3.2.8 LIBEXECPREFIX=/usr/local/libexec/poudriere USER=root QEMU_EMULATING=1 LOCALBASE=/usr/local PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin HOME=/root STATUS=1 MAIL=/var/mail/root BLOCKSIZE=K UNAME_r=11.2-RELEASE-p6 UNAME_v=FreeBSD 11.2-RELEASE-p6 1102000 OSVERSION=1102000 ABI_FILE=/usr/lib/crt1.o UNAME_m=arm UNAME_p=armv6 SHELL=/bin/csh ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-pymol-2.2.0: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " PYQT_SIPDIR=share/py-sip/PyQt5 GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py27-pymol" EXAMPLESDIR="share/examples/py27-pymol" DATADIR="share/py27-pymol" WWWDIR="www/py27-pymol" ETCDIR="etc/py27-pymol" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-pymol DOCSDIR=/usr/local/share/doc/py27-pymol EXAMPLESDIR=/usr/local/share/examples/py27-pymol WWWDIR=/usr/local/www/py27-pymol ETCDIR=/usr/local/etc/py27-pymol --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: armv6-unknown-freebsd11.2-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: armv6-unknown-freebsd11.2-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: armv6-unknown-freebsd11.2-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=11.2-RELEASE-p6 OSREL=11.2 OSVERSION=1102000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License PyMOL accepted by the user =========================================================================== =================================================== ===> py27-pymol-2.2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [112armv6-quarterly-job-13] Installing pkg-1.10.5_5... [112armv6-quarterly-job-13] Extracting pkg-1.10.5_5: .......... done ===> py27-pymol-2.2.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pymol-2.2.0 =========================================================================== =================================================== =========================================================================== =================================================== ===> License PyMOL accepted by the user ===> Fetching all distfiles required by py27-pymol-2.2.0 for building =========================================================================== =================================================== ===> License PyMOL accepted by the user ===> Fetching all distfiles required by py27-pymol-2.2.0 for building [112armv6-quarterly-job-13] | | `-- Extracting readline-7.0.3_1: .......... done [112armv6-quarterly-job-13] | `-- Extracting python27-2.7.15: .......... done [112armv6-quarterly-job-13] `-- Extracting py27-setuptools-40.0.0: .......... done [112armv6-quarterly-job-13] `-- Installing suitesparse-5.2.0_1... [112armv6-quarterly-job-13] | `-- Installing metis-5.1.0_5... [112armv6-quarterly-job-13] | `-- Extracting metis-5.1.0_5: .......... done [112armv6-quarterly-job-13] | `-- Installing openblas-0.2.20_3,1... [112armv6-quarterly-job-13] | `-- Extracting openblas-0.2.20_3,1: ......... done [112armv6-quarterly-job-13] `-- Extracting suitesparse-5.2.0_1: .......... done [112armv6-quarterly-job-13] Extracting py27-numpy-1.15.0,1: .......... done Message from gcc7-7.3.0_5: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc7 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_9: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_5: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-pymol-2.2.0 depends on package: py27-numpy>0 - found ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on file: /usr/local/include/glm/glm.hpp - not found ===> Installing existing package /packages/All/glm-0.9.8.5_2,1.txz [112armv6-quarterly-job-13] Installing glm-0.9.8.5_2,1... [112armv6-quarterly-job-13] Extracting glm-0.9.8.5_2,1: .......... done ===> py27-pymol-2.2.0 depends on file: /usr/local/include/glm/glm.hpp - found ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on package: py27-setuptools>0 - found ===> py27-pymol-2.2.0 depends on file: /usr/local/bin/python2.7 - found ===> py27-pymol-2.2.0 depends on package: xorgproto>=0 - not found ===> Installing existing package /packages/All/xorgproto-2018.4.txz [112armv6-quarterly-job-13] Installing xorgproto-2018.4... [112armv6-quarterly-job-13] Extracting xorgproto-2018.4: .......... done ===> py27-pymol-2.2.0 depends on package: xorgproto>=0 - found ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on package: xorgproto>=0 - found =========================================================================== =================================================== ===> py27-pymol-2.2.0 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.9.1.txz [112armv6-quarterly-job-13] Installing freetype2-2.9.1... [112armv6-quarterly-job-13] Extracting freetype2-2.9.1: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). ===> py27-pymol-2.2.0 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.35.txz [112armv6-quarterly-job-13] Installing png-1.6.35... [112armv6-quarterly-job-13] Extracting png-1.6.35: .......... done ===> py27-pymol-2.2.0 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on shared library: libmsgpackc.so - not found ===> Installing existing package /packages/All/msgpack-3.1.1.txz [112armv6-quarterly-job-13] Installing msgpack-3.1.1... [112armv6-quarterly-job-13] Extracting msgpack-3.1.1: .......... done ===> py27-pymol-2.2.0 depends on shared library: libmsgpackc.so - found (/usr/local/lib/libmsgpackc.so) ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.7.txz [112armv6-quarterly-job-13] Installing libxml2-2.9.7... [112armv6-quarterly-job-13] Extracting libxml2-2.9.7: .......... done ===> py27-pymol-2.2.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on shared library: libGL.so - not found ===> Installing existing package /packages/All/mesa-libs-18.1.9.txz [112armv6-quarterly-job-13] Installing mesa-libs-18.1.9... [112armv6-quarterly-job-13] `-- Installing expat-2.2.6_1... [112armv6-quarterly-job-13] `-- Extracting expat-2.2.6_1: .......... done [112armv6-quarterly-job-13] `-- Installing libX11-1.6.6_1,1... [112armv6-quarterly-job-13] | `-- Installing libXau-1.0.8_5... [112armv6-quarterly-job-13] | `-- Extracting libXau-1.0.8_5: .......... done [112armv6-quarterly-job-13] | `-- Installing libXdmcp-1.1.2_2... [112armv6-quarterly-job-13] | `-- Extracting libXdmcp-1.1.2_2: ......... done [112armv6-quarterly-job-13] | `-- Installing libxcb-1.13.1... [112armv6-quarterly-job-13] | | `-- Installing libpthread-stubs-0.4... [112armv6-quarterly-job-13] | | `-- Extracting libpthread-stubs-0.4: .... done [112armv6-quarterly-job-13] | `-- Extracting libxcb-1.13.1: .......... done [112armv6-quarterly-job-13] `-- Extracting libX11-1.6.6_1,1: .......... done [112armv6-quarterly-job-13] `-- Installing libXdamage-1.1.4_5... [112armv6-quarterly-job-13] | `-- Installing libXfixes-5.0.3_2... [112armv6-quarterly-job-13] | `-- Extracting libXfixes-5.0.3_2: .......... done [112armv6-quarterly-job-13] `-- Extracting libXdamage-1.1.4_5: ......... done [112armv6-quarterly-job-13] `-- Installing libXext-1.3.3_3,1... [112armv6-quarterly-job-13] `-- Extracting libXext-1.3.3_3,1: .......... done [112armv6-quarterly-job-13] `-- Installing libXxf86vm-1.1.4_3... [112armv6-quarterly-job-13] `-- Extracting libXxf86vm-1.1.4_3: .......... done [112armv6-quarterly-job-13] `-- Installing libdrm-2.4.93,1... [112armv6-quarterly-job-13] | `-- Installing libpciaccess-0.13.5... [112armv6-quarterly-job-13] | | `-- Installing pciids-20180921... [112armv6-quarterly-job-13] | | `-- Extracting pciids-20180921: ..... done [112armv6-quarterly-job-13] | `-- Extracting libpciaccess-0.13.5: ......... done [112armv6-quarterly-job-13] `-- Extracting libdrm-2.4.93,1: .......... done [112armv6-quarterly-job-13] `-- Installing libxshmfence-1.2_4... [112armv6-quarterly-job-13] `-- Extracting libxshmfence-1.2_4: ......... done [112armv6-quarterly-job-13] Extracting mesa-libs-18.1.9: .......... done ===> py27-pymol-2.2.0 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on shared library: libGLEW.so - not found ===> Installing existing package /packages/All/glew-2.1.0.txz [112armv6-quarterly-job-13] Installing glew-2.1.0... [112armv6-quarterly-job-13] `-- Installing libGLU-9.0.0_3... [112armv6-quarterly-job-13] `-- Extracting libGLU-9.0.0_3: ...... done [112armv6-quarterly-job-13] `-- Installing libXi-1.7.9_2,1... [112armv6-quarterly-job-13] `-- Extracting libXi-1.7.9_2,1: .......... done [112armv6-quarterly-job-13] `-- Installing libXmu-1.1.2_5,1... [112armv6-quarterly-job-13] | `-- Installing libXt-1.1.5_2,1... [112armv6-quarterly-job-13] | | `-- Installing libICE-1.0.9_3,1... [112armv6-quarterly-job-13] | | `-- Extracting libICE-1.0.9_3,1: .......... done [112armv6-quarterly-job-13] | | `-- Installing libSM-1.2.2_5,1... [112armv6-quarterly-job-13] | | `-- Extracting libSM-1.2.2_5,1: .......... done [112armv6-quarterly-job-13] | `-- Extracting libXt-1.1.5_2,1: .......... done [112armv6-quarterly-job-13] `-- Extracting libXmu-1.1.2_5,1: .......... done [112armv6-quarterly-job-13] Extracting glew-2.1.0: .......... done ===> py27-pymol-2.2.0 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so) ===> Returning to build of py27-pymol-2.2.0 ===> py27-pymol-2.2.0 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> py27-pymol-2.2.0 depends on shared library: libglut.so - not found ===> Installing existing package /packages/All/freeglut-3.0.0_1.txz [112armv6-quarterly-job-13] Installing freeglut-3.0.0_1... [112armv6-quarterly-job-13] `-- Installing libXrandr-1.5.1_2... [112armv6-quarterly-job-13] | `-- Installing libXrender-0.9.10_2... [112armv6-quarterly-job-13] | `-- Extracting libXrender-0.9.10_2: .......... done [112armv6-quarterly-job-13] `-- Extracting libXrandr-1.5.1_2: .......... done [112armv6-quarterly-job-13] Extracting freeglut-3.0.0_1: .......... done Message from freeglut-3.0.0_1: Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> py27-pymol-2.2.0 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so) ===> Returning to build of py27-pymol-2.2.0 =========================================================================== =================================================== ===> Configuring for py27-pymol-2.2.0 numpy not available running config Fatal error 'thread 0xf459b400 exits with resources held!' at line 318 in file /usr/local/poudriere/jails/112armv6/usr/src/lib/libthr/thread/thr_exit.c (errno = 35) *** Signal 11 Stop. make: stopped in /usr/ports/science/py-pymol