From nobody Fri Dec 3 17:24:23 2021 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 0AEF318C85C8; Fri, 3 Dec 2021 17:24:24 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4J5KSR5CtYz4nFl; Fri, 3 Dec 2021 17:24:23 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 93A3515152; Fri, 3 Dec 2021 17:24:23 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1B3HONgu084230; Fri, 3 Dec 2021 17:24:23 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1B3HONUo084229; Fri, 3 Dec 2021 17:24:23 GMT (envelope-from git) Date: Fri, 3 Dec 2021 17:24:23 GMT Message-Id: <202112031724.1B3HONUo084229@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 8261e82cd510 - main - biology/minimap2: Unbreak on i386 by resotring -msse flags List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 8261e82cd510324b14e5463928e537a342cbddbf Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1638552263; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=l5yV/ffGiT8JTq9JvfHcsVc0Q8nAdxbsjLgLPeOKhOo=; b=JrheUXA//yVCD3oEyMS16ldy8HNzEhlSDBUnGYIXGYrh3dK87UzdOzkBSRj1hjsQNNTK4k VIU1p/8bEOgmd8X0ALV9ndcV1kfHR61pIKhIEjjuG/0JrYn09nQUC5yNHZOxsM/3VTUP1c Yd0VABiooN14kBEvkF07e3eraK+UfMGfHpbtzz+2TxIx10lKA9YEgw3L8z91cDTPDatlGg iY56OK0QpUDe0hVKd5GsEPGbSjavqCTsD1MeYdKGkQP+Huz9xphzB23KehIlmjcHu3Lu+r 1DhPjp7QHk6DwGb1wL0O6xSYLeL8p0I3q7NyBWcUzoT4ez8Mfq+6W5hsQwqiSw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1638552263; a=rsa-sha256; cv=none; b=HJOv7owSpj34xKxnsvv3pDtEf71zpJVYwsDKDnFfubZzl4HgRXODMJcVs29Yn6znIMfkSv QdW9GJOdl+hsV2FPvT7fhEUhYe4UN/4mZf7UR6fEz8mJmpRJLkqxUPh2t+fkQVOseu+S9N Q9Wl4Jsybs/jkEvc2vYb3kcWKKjURjYtjXGHqgNEYdkgZlpLTY6XvO14D+AGPSzGFSusXP vdkK2IxaNx/VTMnvYHj6j8QZz8q0p2VAvhcsTb8B0KDP/ttYuHMqWlQTuEYB1yDzILlp/S vhXHjlHKiws7XiYnJxZgqQdiJcNdplqwGZwRuE9YXc8vEHfkzBm8BI3d/PkB5g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=8261e82cd510324b14e5463928e537a342cbddbf commit 8261e82cd510324b14e5463928e537a342cbddbf Author: Jason W. Bacon AuthorDate: 2021-12-03 17:22:37 +0000 Commit: Jason W. Bacon CommitDate: 2021-12-03 17:22:37 +0000 biology/minimap2: Unbreak on i386 by resotring -msse flags --- biology/minimap2/Makefile | 1 + biology/minimap2/files/patch-Makefile.simde | 20 ++------------------ 2 files changed, 3 insertions(+), 18 deletions(-) diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 52b9b669654a..2c04ccd846d9 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,6 +1,7 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v DISTVERSION= 2.23 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/minimap2/files/patch-Makefile.simde b/biology/minimap2/files/patch-Makefile.simde index 8a85b5257ffc..5d5e0ccf482c 100644 --- a/biology/minimap2/files/patch-Makefile.simde +++ b/biology/minimap2/files/patch-Makefile.simde @@ -41,24 +41,8 @@ .SUFFIXES:.c .o .c.o: -@@ -49,18 +62,34 @@ sdust:sdust.c kalloc.o kalloc.h kdq.h kvec.h kseq.h ke - $(CC) -D_SDUST_MAIN $(CFLAGS) $< kalloc.o -o $@ -lz - - ksw2_ll_simde.o:ksw2_ll_sse.c ksw2.h kalloc.h -- $(CC) -c $(CFLAGS) -msse2 $(CPPFLAGS) $(INCLUDES) $< -o $@ -+ $(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ - - ksw2_extz2_simde.o:ksw2_extz2_sse.c ksw2.h kalloc.h -- $(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@ -+ $(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ - - ksw2_extd2_simde.o:ksw2_extd2_sse.c ksw2.h kalloc.h -- $(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@ -+ $(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ - - ksw2_exts2_simde.o:ksw2_exts2_sse.c ksw2.h kalloc.h -- $(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@ -+ $(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ +@@ -61,6 +74,22 @@ ksw2_exts2_simde.o:ksw2_exts2_sse.c ksw2.h kalloc.h + $(CC) -c $(CFLAGS) -msse4.1 $(CPPFLAGS) $(INCLUDES) $< -o $@ # other non-file targets +