Date: Sat, 5 Aug 2017 18:26:34 GMT From: pkg-fallout@FreeBSD.org To: skreuzer@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 110i386-default][graphics/R-cran-GDD] Failed for R-cran-GDD-0.1.13.1_11 in stage Message-ID: <201708051826.v75IQYaK083190@beefy10.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: skreuzer@FreeBSD.org Last committer: dbn@FreeBSD.org Ident: $FreeBSD: head/graphics/R-cran-GDD/Makefile 443845 2017-06-18 18:09:16Z dbn $ Log URL: http://beefy10.nyi.freebsd.org/data/110i386-default/447380/logs/R-cran-GDD-0.1.13.1_11.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=110i386-default&build=447380 Log: ====>> Building graphics/R-cran-GDD build started at Sat Aug 5 18:25:46 UTC 2017 port directory: /usr/ports/graphics/R-cran-GDD building for: FreeBSD 110i386-default-job-03 11.0-RELEASE-p11 FreeBSD 11.0-RELEASE-p11 i386 maintained by: skreuzer@FreeBSD.org Makefile ident: $FreeBSD: head/graphics/R-cran-GDD/Makefile 443845 2017-06-18 18:09:16Z dbn $ Poudriere version: 3.1.19-61-ga8829ba9 Host OSVERSION: 1200033 Jail OSVERSION: 1100122 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p11 UNAME_r=11.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110i386-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-GDD-0.1.13.1_11 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110i386-default/ref/.p/pool MASTERNAME=110i386-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-61-ga8829ba9 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/bin -fstack-pro tector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/GDD OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/GDD" EXAMPLESDIR="share/examples/GDD" DATADIR="share/GDD" WWWDIR="www/GDD" ETCDIR="etc/GDD" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/GDD DOCSDIR=/usr/local/share/doc/GDD EXAMPLESDIR=/usr/local/share/examples/GDD WWWDIR=/usr/local/www/GDD ETCDIR=/usr/local/etc/GDD --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=i386 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=11.0-RELEASE-p11 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [110i386-default-job-03] Installing pkg-1.10.1... [110i386-default-job-03] Extracting pkg-1.10.1: .......... done ===> R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-GDD-0.1.13.1_11 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-GDD-0.1.13.1_11 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-GDD-0.1.13.1_11 for building => SHA256 Checksum OK for GDD_0.1-13.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-GDD-0.1.13.1_11 for building ===> Extracting for R-cran-GDD-0.1.13.1_11 => SHA256 Checksum OK for GDD_0.1-13.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-GDD-0.1.13.1_11 ===> Applying FreeBSD patches for R-cran-GDD-0.1.13.1_11 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-GDD-0.1.13.1_11 depends on package: libgd>=2.0.35_8,1 - not found ===> Installing existing package /packages/All/libgd-2.2.4_1,1.txz [110i386-default-job-03] Installing libgd-2.2.4_1,1... [110i386-default-job-03] `-- Installing fontconfig-2.12.1,1... [110i386-default-job-03] | `-- Installing expat-2.2.1... [110i386-default-job-03] | `-- Extracting expat-2.2.1: .......... done [110i386-default-job-03] | `-- Installing freetype2-2.8... [110i386-default-job-03] | `-- Extracting freetype2-2.8: .......... done [110i386-default-job-03] `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [110i386-default-job-03] `-- Installing jpeg-turbo-1.5.1... [110i386-default-job-03] `-- Extracting jpeg-turbo-1.5.1: .......... done [110i386-default-job-03] `-- Installing png-1.6.29... [110i386-default-job-03] `-- Extracting png-1.6.29: .......... done [110i386-default-job-03] `-- Installing tiff-4.0.8... [110i386-default-job-03] | `-- Installing jbigkit-2.1_1... [110i386-default-job-03] | `-- Extracting jbigkit-2.1_1: .......... done [110i386-default-job-03] `-- Extracting tiff-4.0.8: .......... done [110i386-default-job-03] `-- Installing webp-0.6.0_3... [110i386-default-job-03] | `-- Installing giflib-5.1.4... [110i386-default-job-03] | `-- Extracting giflib-5.1.4: .......... done <snip> [110i386-default-job-03] `-- Installing wget-1.19.1_1... [110i386-default-job-03] `-- Extracting wget-1.19.1_1: .......... done [110i386-default-job-03] Extracting R-3.4.1_4: .......... done Message from perl5-5.24.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.32: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc5-5.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from R-3.4.1_4: ======================================================================== On 11.1 and later, there is a problem downloading R packages when gfortran is chosen as the fortran compiler. Use either of these workarounds until a permanent solution is found. 1. If you are on an amd64 system, you can use flang as the fortran compiler. 2. If you choose gfortran as the fortran compiler, you can add options(download.file.method="wget") to ~/.Rprofile followed by a newline. Details: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=221127 ======================================================================== ===> R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-GDD-0.1.13.1_11 ===> R-cran-GDD-0.1.13.1_11 depends on executable: gfortran5 - found ===> R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-GDD-0.1.13.1_11 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-GDD-0.1.13.1_11 depends on package: libgd>=2.0.35_8,1 - found ===> R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/bin/R - found ===> R-cran-GDD-0.1.13.1_11 depends on executable: gfortran5 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-GDD-0.1.13.1_11 ===> Generating temporary packing list * installing *source* package 'GDD' ... file 'src/Makevars.in' has the wrong MD5 checksum checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking return type of signal handlers... void checking for memset... yes checking for mkdir... yes checking for rmdir... yes checking for gdlib-config... /usr/local/bin/gdlib-config gdlib-config: warning: this script is deprecated; please use the pkg-config file instead. gdlib-config: warning: this script is deprecated; please use the pkg-config file instead. gdlib-config: warning: this script is deprecated; please use the pkg-config file instead. gdlib-config: warning: this script is deprecated; please use the pkg-config file instead. gdlib-config: warning: this script is deprecated; please use the pkg-config file instead. libgd-flags according to gdlib-config: -I/usr/local/include -L/usr/local/lib -fstack-protector -lgd -lm -lz -L/usr/local/lib -lpng16 -L/usr/local/lib -lfreetype -L/usr/local/lib -lfontconfig -lfreetype -ljpeg -L/usr/local/lib -ltiff -lwebp if that is not correct, fix your gd installation checking gd.h usability... yes checking gd.h presence... yes checking for gd.h... yes checking for gdImageCreateFromPng in -lgd... yes checking usability of FreeType in GD... yes checking whether GD programs can be compiled... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/gddconfig.h ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/graphics/R-cran-GDD/work/GDD/src' Makevars:2: *** missing separator. Stop. gmake[1]: Leaving directory '/wrkdirs/usr/ports/graphics/R-cran-GDD/work/GDD/src' ERROR: compilation failed for package 'GDD' * removing '/wrkdirs/usr/ports/graphics/R-cran-GDD/work/stage/usr/local/lib/R/library/GDD' *** Error code 1 Stop. make: stopped in /usr/ports/graphics/R-cran-GDD
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