From owner-freebsd-ports@FreeBSD.ORG Mon Feb 5 22:53:26 2007 Return-Path: X-Original-To: ports@FreeBSD.org Delivered-To: freebsd-ports@FreeBSD.ORG Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id 785D416A400 for ; Mon, 5 Feb 2007 22:53:25 +0000 (UTC) (envelope-from eric@vangyzen.net) Received: from smtp.vangyzen.net (static-74-41-215-198.dr01.brvl.mn.frontiernet.net [74.41.215.198]) by mx1.freebsd.org (Postfix) with ESMTP id 1B16313C474 for ; Mon, 5 Feb 2007 22:53:25 +0000 (UTC) (envelope-from eric@vangyzen.net) Received: from [10.1.1.6] (floater.vangyzen.net [10.1.1.6]) (using TLSv1 with cipher DHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.vangyzen.net (Postfix) with ESMTP id 4C79822836; Mon, 5 Feb 2007 16:35:59 -0600 (CST) Message-ID: <45C7B175.50603@vangyzen.net> Date: Mon, 05 Feb 2007 16:36:37 -0600 From: Eric van Gyzen User-Agent: Thunderbird 1.5.0.2 (Windows/20060308) MIME-Version: 1.0 To: Joey Mingrone References: In-Reply-To: Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: 7bit Cc: ports@FreeBSD.org Subject: Re: FreeBSD Port: R-2.4.1 X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 05 Feb 2007 22:53:26 -0000 Joey, Try removing any existing R installation before building 2.4.1. Also, reinstall all of R's dependencies -- blas and its dependents are now built with gfortran 4.2.0. Eric Joey Mingrone wrote: > Hi: > > I'm trying to install the R port, but get linking errors during the > installation. I've included the text below. > > Here's what my uname -a says: > > FreeBSD karlsruhe.mingrone.org 6.1-RELEASE-p11 FreeBSD 6.1-RELEASE-p11 > #0: Wed Dec 20 08:25:54 AST 2006 > root@karlsruhe.mingrone.org:/usr/obj/usr/src/sys/KARLSRUHE_MINGRONE_ORG_2006-12-20 > > i386 > > Thanks for any help you can provide and please let me know if there is > any other information you need. > > Joey > > > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c util.c -o util.o > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c version.c -o version.o > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c vfonts.c -o vfonts.o > gfortran42 -D__NO_MATH_INLINES -fpic -g -O2 -c xxxpr.f -o xxxpr.o > cc -std=gnu99 -shared -L/usr/local/lib -o libR.so CConverters.o > CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o > apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o > colors.o complex.o connections.o context.o cov.o cum.o dcf.o > datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o > duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o > gevents.o gram.o gram-ex.o graphics.o identical.o internet.o > iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o > match.o memory.o model.o names.o objects.o optim.o optimize.o > options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o > print.o printarray.o printvector.o printutils.o qsort.o random.o > regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o > serialize.o size.o sort.o source.o split.o sprintf.o startup.o > subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o > version.o vfonts.o xxxpr.o `ls ../appl/*.o ../nmath/*.o ../unix/*.o > 2>/dev/null|grep -v /ext-` -lblas > -L/usr/local/lib/gcc-4.2.0/gcc/i386-portbld-freebsd6.1/4.2.0 > -L/usr/local/lib/gcc-4.2.0 -lgfortran -lm -lgcc_s > /usr/local/lib/libintl.so /usr/local/lib/libiconv.so -Wl,-rpath > -Wl,/usr/local/lib -lreadline -lpcre -lbz2 -lz -lm -liconv > mkdir /usr/ports/math/R/work/R-2.4.1/bin/exec > mkdir /usr/ports/math/R/work/R-2.4.1/lib > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c Rmain.c -o Rmain.o > cc -std=gnu99 -export-dynamic -L/usr/local/lib -o R.bin Rmain.o > -L../../lib -lR > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__mulxc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__mulsc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__divsc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__muldc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__divdc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__divxc3@GCC_4.0.0' > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1/src/main. > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1/src/main. > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1/src. > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1. > *** Error code 1 > > Stop in /usr/ports/math/R. > ** Command failed [exit code 1]: /usr/bin/script -qa > /tmp/portinstall.44120.0 env make > ** Fix the problem and try again. > ** Listing the failed packages (*:skipped / !:failed) > ! math/R (linker error) > ---> Packages processed: 0 done, 0 ignored, 0 skipped and 1 failed >