Date: Wed, 26 Jul 2006 23:42:44 +0800 (CST) From: Cheng-Lung Sung <clsung@FreeBSD.org> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/100886: [NEW PORT] science/ghmm: General Hidden Markov Model Library in C Message-ID: <20060726154244.262247E9A8@FreeBSD.csie.nctu.edu.tw> Resent-Message-ID: <200607261550.k6QFoGSU013370@freefall.freebsd.org>
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>Number: 100886 >Category: ports >Synopsis: [NEW PORT] science/ghmm: General Hidden Markov Model Library in C >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Wed Jul 26 15:50:15 GMT 2006 >Closed-Date: >Last-Modified: >Originator: Cheng-Lung Sung >Release: FreeBSD 6.1-STABLE i386 >Organization: FreeBSD @ Taiwan >Environment: System: FreeBSD FreeBSD.csie.nctu.edu.tw 6.1-STABLE FreeBSD 6.1-STABLE #9: Thu May 11 14:31:45 CST 2006 >Description: The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures. WWW: http://ghmm.sourceforge.net/ Generated with FreeBSD Port Tools 0.77 >How-To-Repeat: >Fix: --- ghmm-0.7.0a.shar begins here --- # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # ghmm # ghmm/pkg-descr # ghmm/Makefile # ghmm/pkg-plist # ghmm/distinfo # ghmm/files # ghmm/files/patch-ltmain.sh # echo c - ghmm mkdir -p ghmm > /dev/null 2>&1 echo x - ghmm/pkg-descr sed 's/^X//' >ghmm/pkg-descr << 'END-of-ghmm/pkg-descr' XThe General Hidden Markov Model Library (GHMM) is a C library Xwith additional Python bindings implementing a wide range of Xtypes of Hidden Markov Models and algorithms: Xdiscrete, continous emissions, basic training, XHMM clustering, HMM mixtures. X XWWW: http://ghmm.sourceforge.net/ END-of-ghmm/pkg-descr echo x - ghmm/Makefile sed 's/^X//' >ghmm/Makefile << 'END-of-ghmm/Makefile' X# New ports collection makefile for: ghmm X# Date created: 2006-07-26 X# Whom: Cheng-Lung Sung <clsung@FreeBSD.org> X# X# $FreeBSD$ X# X XPORTNAME= ghmm XPORTVERSION= 0.7.0a XCATEGORIES= science math XMASTER_SITES= ${MASTER_SITE_SOURCEFORGE} XMASTER_SITE_SUBDIR= ${PORTNAME} X XMAINTAINER= clsung@FreeBSD.org XCOMMENT= General Hidden Markov Model Library in C X XGNU_CONFIGURE= yes XINSTALLS_SHLIB= yes XWRKSRC= ${WRKDIR}/${PORTNAME}-0.7.0 X Xpost-patch: X @${REINPLACE_CMD} 's|tests doc VisualC|tests VisualC|' ${WRKSRC}/configure X X.include <bsd.port.mk> END-of-ghmm/Makefile echo x - ghmm/pkg-plist sed 's/^X//' >ghmm/pkg-plist << 'END-of-ghmm/pkg-plist' X@comment $FreeBSD$ Xbin/probdist Xbin/cluster Xbin/scluster Xbin/smix_hmm Xbin/ghmm-config Xinclude/ghmm/ghmm.h Xinclude/ghmm/foba.h Xinclude/ghmm/model.h Xinclude/ghmm/cluster.h Xinclude/ghmm/scluster.h Xinclude/ghmm/root_finder.h Xinclude/ghmm/reestimate.h Xinclude/ghmm/sequence.h Xinclude/ghmm/viterbi.h Xinclude/ghmm/sfoba.h Xinclude/ghmm/sviterbi.h Xinclude/ghmm/smodel.h Xinclude/ghmm/sdmodel.h Xinclude/ghmm/sdfoba.h Xinclude/ghmm/sreestimate.h Xinclude/ghmm/sgenerate.h Xinclude/ghmm/smixturehmm.h Xinclude/ghmm/scanner.h Xinclude/ghmm/gauss_tail.h Xinclude/ghmm/smap_classify.h Xinclude/ghmm/kbest.h Xinclude/ghmm/gradescent.h Xinclude/ghmm/discrime.h Xinclude/ghmm/psequence.h Xinclude/ghmm/pmodel.h Xinclude/ghmm/linkedlist.h Xinclude/ghmm/pviterbi.h Xinclude/ghmm/pviterbi_propagate.h Xinclude/ghmm/vector.h Xinclude/ghmm/matrix.h Xinclude/ghmm/const.h Xinclude/ghmm/rng.h Xinclude/ghmm/mes.h Xinclude/ghmm/randvar.h Xinclude/ghmm/internal.h Xlib/libghmm.so.0 Xlib/libghmm.so Xlib/libghmm.a X%%DATADIR%%/PHI_001_20.dat X@dirrmtry %%DATADIR%% X@dirrmtry include/ghmm END-of-ghmm/pkg-plist echo x - ghmm/distinfo sed 's/^X//' >ghmm/distinfo << 'END-of-ghmm/distinfo' XMD5 (ghmm-0.7.0a.tar.gz) = 7bbaf9bf6d7e0f7658e0809c2eddb674 XSHA256 (ghmm-0.7.0a.tar.gz) = 93bce7423a1f81da83f457fef7aa3f4190669700eb635f641960f9480797195e XSIZE (ghmm-0.7.0a.tar.gz) = 756779 END-of-ghmm/distinfo echo c - ghmm/files mkdir -p ghmm/files > /dev/null 2>&1 echo x - ghmm/files/patch-ltmain.sh sed 's/^X//' >ghmm/files/patch-ltmain.sh << 'END-of-ghmm/files/patch-ltmain.sh' X--- ltmain.sh.orig Thu Oct 13 16:30:04 2005 X+++ ltmain.sh Wed Jul 26 11:29:48 2006 X@@ -5772,10 +5772,12 @@ X fi X X # Install the pseudo-library for information purposes. X+ if /usr/bin/false ; then X name=`$echo "X$file" | $Xsed -e 's%^.*/%%'` X instname="$dir/$name"i X $show "$install_prog $instname $destdir/$name" X $run eval "$install_prog $instname $destdir/$name" || exit $? X+ fi X X # Maybe install the static library, too. X test -n "$old_library" && staticlibs="$staticlibs $dir/$old_library" END-of-ghmm/files/patch-ltmain.sh exit --- ghmm-0.7.0a.shar ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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