From owner-freebsd-pkg-fallout@freebsd.org Thu Oct 24 07:48:05 2019 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 8F8D0162B83 for ; Thu, 24 Oct 2019 07:48:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 46zK9K3zkDz4fLn for ; Thu, 24 Oct 2019 07:48:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.nyi.freebsd.org (Postfix) id 86499162B82; Thu, 24 Oct 2019 07:48:05 +0000 (UTC) Delivered-To: pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 85F9C162B81 for ; Thu, 24 Oct 2019 07:48:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 46zK9K3LM1z4fLm; Thu, 24 Oct 2019 07:48:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:f3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 55D22AD8B; Thu, 24 Oct 2019 07:48:05 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy18.nyi.freebsd.org (localhost [127.0.0.1]) by beefy18.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id x9O7m5o3029521; Thu, 24 Oct 2019 07:48:05 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy18.nyi.freebsd.org (8.15.2/8.15.2/Submit) id x9O7m57f029518; Thu, 24 Oct 2019 07:48:05 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 24 Oct 2019 07:48:05 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201910240748.x9O7m57f029518@beefy18.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - head-amd64-default][science/bagel] Failed for bagel-1.2.2_4 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 24 Oct 2019 07:48:05 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/science/bagel/Makefile 509290 2019-08-19 15:35:27Z jbeich $ Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p515319_s353967/logs/bagel-1.2.2_4.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p515319_s353967 Log: =>> Building science/bagel build started at Thu Oct 24 06:57:13 UTC 2019 port directory: /usr/ports/science/bagel package name: bagel-1.2.2_4 building for: FreeBSD head-amd64-default-job-21 13.0-CURRENT FreeBSD 13.0-CURRENT 1300054 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/bagel/Makefile 509290 2019-08-19 15:35:27Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300047 Jail OSVERSION: 1300054 Job Id: 21 !!! Jail is newer than host. (Jail: 1300054, Host: 1300047) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300054 UNAME_v=FreeBSD 13.0-CURRENT 1300054 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for bagel-1.2.2_4: LIBXC=on: Build DFT with libxc MPI=on: MPI (Message Passing Interface) support SCALAPACK=on: Use ScaLapack library for parallelized linear algebra SMITH=on: Compile SMITH generated code ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --datarootdir=/usr/local/share/bagel --with-libxc --with-mpi=openmpi --enable-scalapack --enable-smith --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" MAKE=gmake PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lcblas -lscalapack -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bagel" EXAMPLESDIR="share/examples/bagel" DATADIR="share/bagel" WWWDIR="www/bagel" ETCDIR="etc/bagel" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bagel DOCSDIR=/usr/local/share/doc/bagel EXAMPLESDIR=/usr/local/share/examples/bagel WWWDIR=/usr/local/www/bagel ETCDIR=/usr/local/etc/bagel --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300054 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===> bagel-1.2.2_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz [head-amd64-default-job-21] Installing pkg-1.12.0... [head-amd64-default-job-21] Extracting pkg-1.12.0: .......... done ===> bagel-1.2.2_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of bagel-1.2.2_4 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by bagel-1.2.2_4 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by bagel-1.2.2_4 for building => SHA256 Checksum OK for nubakery-bagel-v1.2.2_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by bagel-1.2.2_4 for building ===> Extracting for bagel-1.2.2_4 => SHA256 Checksum OK for nubakery-bagel-v1.2.2_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for bagel-1.2.2_4 ===> Applying FreeBSD patches for bagel-1.2.2_4 =========================================================================== =================================================== ===> bagel-1.2.2_4 depends on executable: gfortran9 - not found ===> Installing existing package /packages/All/gcc9-9.2.0.txz [head-amd64-default-job-21] Installing gcc9-9.2.0... [head-amd64-default-job-21] `-- Installing binutils-2.32_1,1... ^ ./../../src/integral/rys/eribatch_base.h:96:30: note: in instantiation of template class 'bagel::ERIBatch_Base, bagel::Int_t::London>' requested here extern template class bagel::ERIBatch_Base,bagel::Int_t::London>; ^ ./../../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here virtual void root_weight(const int ps) = 0; ^ In file included from zcasnoopt.cc:29: In file included from ../../../src/mat1e/rel/relhcore.h:32: In file included from ../../../src/mat1e/rel/small1e.h:31: In file included from ../../../src/integral/rys/naibatch.h:28: In file included from ../../../src/integral/rys/coulombbatch_energy.h:28: ./../../src/integral/rys/coulombbatch_base.h:50:18: warning: 'root_weight' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual void root_weight(const int ps) = 0; ^ ./../../src/integral/rys/coulombbatch_base.h:99:30: note: in instantiation of template class 'bagel::CoulombBatch_Base' requested here extern template class bagel::CoulombBatch_Base; ^ ./../../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here virtual void root_weight(const int ps) = 0; ^ In file included from zcasnoopt.cc:29: In file included from ../../../src/mat1e/rel/relhcore.h:32: In file included from ../../../src/mat1e/rel/small1e.h:31: In file included from ../../../src/integral/rys/naibatch.h:28: In file included from ../../../src/integral/rys/coulombbatch_energy.h:28: ./../../src/integral/rys/coulombbatch_base.h:50:18: warning: 'root_weight' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual void root_weight(const int ps) = 0; ^ ./../../src/integral/rys/coulombbatch_base.h:100:30: note: in instantiation of template class 'bagel::CoulombBatch_Base, bagel::Int_t::London>' requested here extern template class bagel::CoulombBatch_Base,bagel::Int_t::London>; ^ ./../../src/integral/rys/rysintegral.h:92:18: note: overridden virtual function is here virtual void root_weight(const int ps) = 0; ^ 7 warnings generated. mv -f .deps/zcasnoopt.Tpo .deps/zcasnoopt.Plo /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -L/usr/local/lib -lcblas -lscalapack -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -o libbagel_zcasscf.la zcasscf.lo zcassecond.lo zcassecond_compute.lo zqvec.lo zcasnoopt.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lscalapack -L/usr/local/lib libtool: link: /usr/local/bin/ar cru .libs/libbagel_zcasscf.a .libs/zcasscf.o .libs/zcassecond.o .libs/zcassecond_compute.o .libs/zqvec.o .libs/zcasnoopt.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libbagel_zcasscf.a libtool: link: ( cd ".libs" && rm -f "libbagel_zcasscf.la" && ln -s "../libbagel_zcasscf.la" "libbagel_zcasscf.la" ) gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/multi/zcasscf' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/multi' gmake[5]: Nothing to be done for 'all-am'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/multi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/multi' Making all in smith gmake[4]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/smith' depbase=`echo smith_info.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT smith_info.lo -MD -MP -MF $depbase.Tpo -c -o smith_info.lo smith_info.cc &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo indexrange.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT indexrange.lo -MD -MP -MF $depbase.Tpo -c -o indexrange.lo indexrange.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT smith_info.lo -MD -MP -MF .deps/smith_info.Tpo -c smith_info.cc -fPIC -DPIC -o .libs/smith_info.o libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT indexrange.lo -MD -MP -MF .deps/indexrange.Tpo -c indexrange.cc -fPIC -DPIC -o .libs/indexrange.o In file included from smith_info.cc:28: In file included from ../../src/smith/smith_info.h:28: In file included from ../../src/wfn/relreference.h:28: In file included from ../../src/wfn/reference.h:30: In file included from ../../src/mat1e/hcore.h:29: In file included from ../../src/wfn/hcoreinfo.h:29: In file included from ../../src/molecule/molecule.h:29: In file included from ../../src/molecule/atom.h:29: In file included from ../../src/molecule/shell.h:29: ./../src/util/math/zmatrix.h:73:18: warning: 'diagonalize' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual void diagonalize(VecView vec); ^ ./../src/util/math/matrix_base.h:123:18: note: overridden virtual function is here virtual void diagonalize(VecView vec) = 0; ^ In file included from smith_info.cc:28: In file included from ../../src/smith/smith_info.h:28: In file included from ../../src/wfn/relreference.h:28: In file included from ../../src/wfn/reference.h:32: In file included from ../../src/wfn/geometry.h:29: In file included from ../../src/df/df.h:28: In file included from ../../src/df/paralleldf.h:29: In file included from ../../src/df/dfinttask_old.h:28: ./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual void compute() = 0; ^ ./../src/integral/rys/rysintegral.h:173:30: note: in instantiation of template class 'bagel::RysIntegral' requested here extern template class bagel::RysIntegral; ^ ./../src/integral/integral.h:42:18: note: overridden virtual function is here virtual void compute() = 0; ^ In file included from smith_info.cc:28: In file included from ../../src/smith/smith_info.h:28: In file included from ../../src/wfn/relreference.h:28: In file included from ../../src/wfn/reference.h:32: In file included from ../../src/wfn/geometry.h:29: In file included from ../../src/df/df.h:28: In file included from ../../src/df/paralleldf.h:29: In file included from ../../src/df/dfinttask_old.h:28: ./../src/integral/rys/rysintegral.h:153:18: warning: 'compute' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual void compute() = 0; ^ ./../src/integral/rys/rysintegral.h:174:30: note: in instantiation of template class 'bagel::RysIntegral, bagel::Int_t::London>' requested here extern template class bagel::RysIntegral,bagel::Int_t::London>; ^ ./../src/integral/integral.h:42:18: note: overridden virtual function is here virtual void compute() = 0; ^ depbase=`echo storage.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT storage.lo -MD -MP -MF $depbase.Tpo -c -o storage.lo storage.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT storage.lo -MD -MP -MF .deps/storage.Tpo -c storage.cc -fPIC -DPIC -o .libs/storage.o In file included from smith_info.cc:30: In file included from ../../src/ci/fci/fci.h:29: ./../src/ci/fci/fci_base.h:154:46: warning: 'conv_to_ref' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual std::shared_ptr conv_to_ref() const = 0; ^ ./../src/wfn/method.h:57:46: note: overridden virtual function is here virtual std::shared_ptr conv_to_ref() const = 0; ^ In file included from smith_info.cc:30: ./../src/ci/fci/fci.h:95:18: warning: 'update' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] virtual void update(std::shared_ptr) = 0; ^ ./../src/ci/fci/fci_base.h:104:18: note: overridden virtual function is here virtual void update(std::shared_ptr) = 0; ^ depbase=`echo storagekramers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT storagekramers.lo -MD -MP -MF $depbase.Tpo -c -o storagekramers.lo storagekramers.cc &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -isystem /usr/local/include -I/usr/local/include -I../.. -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT storagekramers.lo -MD -MP -MF .deps/storagekramers.Tpo -c storagekramers.cc -fPIC -DPIC -o .libs/storagekramers.o In file included from storagekramers.cc:28: ./../src/smith/storagekramers.h:182:10: warning: 'put_block' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] void put_block(const std::unique_ptr& dat, const std::vector indices); ^ ./../src/smith/storagekramers.h:203:23: note: in instantiation of template class 'bagel::SMITH::StorageKramers' requested here extern template class StorageKramers; ^ ./../src/smith/storage.h:217:18: note: overridden virtual function is here virtual void put_block(const std::unique_ptr& dat, const std::vector i); ^ In file included from storagekramers.cc:28: ./../src/smith/storagekramers.h:182:10: warning: 'put_block' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] void put_block(const std::unique_ptr& dat, const std::vector indices); ^ ./../src/smith/storagekramers.h:204:23: note: in instantiation of template class 'bagel::SMITH::StorageKramers >' requested here extern template class StorageKramers>; ^ ./../src/smith/storage.h:217:18: note: overridden virtual function is here virtual void put_block(const std::unique_ptr& dat, const std::vector i); ^ clang-cpp: error: unable to execute command: Killed clang-cpp: error: clang frontend command failed due to signal (use -v to see invocation) FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin clang-cpp: note: diagnostic msg: PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. clang-cpp: error: unable to execute command: Killed clang-cpp: error: clang frontend command failed due to signal (use -v to see invocation) FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin clang-cpp: note: diagnostic msg: PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. clang-cpp: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: clang-cpp: note: diagnostic msg: /tmp/storagekramers-5c3015.cpp clang-cpp: note: diagnostic msg: /tmp/storagekramers-5c3015.sh clang-cpp: note: diagnostic msg: ******************** gmake[4]: *** [Makefile:1558: storagekramers.lo] Error 1 gmake[4]: *** Waiting for unfinished jobs.... clang-cpp: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: clang-cpp: note: diagnostic msg: /tmp/smith_info-ca6eaf.cpp clang-cpp: note: diagnostic msg: /tmp/smith_info-ca6eaf.sh clang-cpp: note: diagnostic msg: ******************** gmake[4]: *** [Makefile:1558: smith_info.lo] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src/smith' gmake[3]: *** [Makefile:640: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2/src' gmake[2]: *** [Makefile:421: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2' gmake[1]: *** [Makefile:353: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/bagel