From owner-freebsd-pkg-fallout@freebsd.org Thu Jul 26 07:48:50 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 815781045D0D for ; Thu, 26 Jul 2018 07:48:50 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id E069C834D3 for ; Thu, 26 Jul 2018 07:48:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id A5C371045D0C; Thu, 26 Jul 2018 07:48:49 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 7317B1045D0B for ; Thu, 26 Jul 2018 07:48:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 2A456834D1; Thu, 26 Jul 2018 07:48:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (beefy12.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ef]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 0B39B26202; Thu, 26 Jul 2018 07:48:49 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy12.nyi.freebsd.org (localhost [127.0.0.1]) by beefy12.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w6Q7mnfC079664; Thu, 26 Jul 2018 07:48:49 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy12.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w6Q7mn4H079663; Thu, 26 Jul 2018 07:48:49 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 26 Jul 2018 07:48:49 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201807260748.w6Q7mn4H079663@beefy12.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - head-amd64-default][science/libghemical] Failed for libghemical-3.0.0_11 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 26 Jul 2018 07:48:50 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/libghemical/Makefile 474844 2018-07-18 09:25:31Z yuri $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p475340_s336728/logs/libghemical-3.0.0_11.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p475340_s336728 Log: =>> Building science/libghemical build started at Thu Jul 26 07:47:21 UTC 2018 port directory: /usr/ports/science/libghemical package name: libghemical-3.0.0_11 building for: FreeBSD head-amd64-default-job-10 12.0-CURRENT FreeBSD 12.0-CURRENT 1200075 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/libghemical/Makefile 474844 2018-07-18 09:25:31Z yuri $ Poudriere version: 3.2.7-2-g1cf194be Host OSVERSION: 1200069 Jail OSVERSION: 1200075 Job Id: 10 !!! Jail is newer than host. (Jail: 1200075, Host: 1200069) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200075 UNAME_v=FreeBSD 12.0-CURRENT 1200075 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.7-2-g1cf194be MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- LD_PRELOAD=/usr/local/lib/gcc6/libgcc_s.so F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/libghemical/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/libghemical/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- LIBGHEMICAL_VERSION="3.0.0" PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libghemical" EXAMPLESDIR="share/examples/libghemical" DATADIR="share/libghemical" WWWDIR="www/libghemical" ETCDIR="etc/libghemical" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: x86_64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.0-CURRENT OSREL=12.0 OSVERSION=1200075 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> libghemical-3.0.0_11 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz [head-amd64-default-job-10] Installing pkg-1.10.5_1... [head-amd64-default-job-10] Extracting pkg-1.10.5_1: .......... done ===> libghemical-3.0.0_11 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libghemical-3.0.0_11 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libghemical-3.0.0_11 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libghemical-3.0.0_11 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libghemical-3.0.0_11 for building ===> Extracting for libghemical-3.0.0_11 => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for libghemical-3.0.0_11 =========================================================================== =================================================== ===> libghemical-3.0.0_11 depends on executable: obabel - not found ===> Installing existing package /packages/All/openbabel-2.4.1_1.txz [head-amd64-default-job-10] Installing openbabel-2.4.1_1... [head-amd64-default-job-10] `-- Installing libxml2-2.9.7... checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/local/bin/perl checking for perl >= 5.8.1... 5.26.2 checking for XML::Parser... ok checking for locale.h... (cached) yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... yes checking GL/gl.h usability... yes checking GL/gl.h presence... yes checking for GL/gl.h... yes checking for cc option to accept ISO C99... none needed checking for cc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking for an ANSI C-conforming const... yes checking for ANSI C header files... (cached) yes configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : no configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands =========================================================================== =================================================== ===> Building for libghemical-3.0.0_11 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' Making all in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' gmake all-am gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o atom.lo atom.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -fPIC -DPIC -o .libs/atom.o atom.cpp:33:44: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] element element::current_element = element("C"); ^ 1 warning generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -o atom.o >/dev/null 2>&1 mv -f .deps/atom.Tpo .deps/atom.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c -o bond.lo bond.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -fPIC -DPIC -o .libs/bond.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -o bond.o >/dev/null 2>&1 mv -f .deps/bond.Tpo .deps/bond.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c -o constraint.lo constraint.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -o constraint.o >/dev/null 2>&1 mv -f .deps/constraint.Tpo .deps/constraint.Plo /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT model.lo -MD -MP -MF .deps/model.Tpo -c -o model.lo model.cpp libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -I/usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector -fno-strict-aliasing -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.cpp -fPIC -DPIC -o .libs/model.o In file included from model.cpp:31: ./eng1_qm.h:128:148: warning: control reaches end of non-void function [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ ./eng1_qm.h:129:135: warning: control reaches end of non-void function [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ In file included from model.cpp:35: ./eng2_qm_mm.h:127:148: warning: control reaches end of non-void function [-Wreturn-type] virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ ./eng2_qm_mm.h:128:135: warning: control reaches end of non-void function [-Wreturn-type] virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } ^ model.cpp:320:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ model.cpp:1755:31: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses] if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) ^ ~ model.cpp:1755:31: note: add parentheses after the '!' to evaluate the bitwise operator first if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) ^ ( ) model.cpp:1755:31: note: add parentheses around left hand side expression to silence this warning if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) ^ ( ) model.cpp:2566:20: error: non-constant-expression cannot be narrowed from type 'double' to 'fGL' (aka 'float') in initializer list [-Wc++11-narrowing] fGL crdH2[3] = { cos(angle)*0.095, sin(angle)*0.095, 0.0 }; ^~~~~~~~~~~~~~~~ model.cpp:2566:20: note: insert an explicit cast to silence this issue fGL crdH2[3] = { cos(angle)*0.095, sin(angle)*0.095, 0.0 }; ^~~~~~~~~~~~~~~~ static_cast( ) model.cpp:2566:38: error: non-constant-expression cannot be narrowed from type 'double' to 'fGL' (aka 'float') in initializer list [-Wc++11-narrowing] fGL crdH2[3] = { cos(angle)*0.095, sin(angle)*0.095, 0.0 }; ^~~~~~~~~~~~~~~~ model.cpp:2566:38: note: insert an explicit cast to silence this issue fGL crdH2[3] = { cos(angle)*0.095, sin(angle)*0.095, 0.0 }; ^~~~~~~~~~~~~~~~ static_cast( ) model.cpp:4441:82: warning: illegal character encoding in string literal [-Winvalid-source-encoding] txts << "displacement " << b_tab[ac] << " nm^2 = " << (b_tab[ac] * 100.0) << " ^2 "; ^~~~ 7 warnings and 2 errors generated. gmake[3]: *** [Makefile:492: model.lo] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' gmake[2]: *** [Makefile:342: all] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' gmake[1]: *** [Makefile:365: all-recursive] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' *** Error code 1 Stop. make: stopped in /usr/ports/science/libghemical