Date: Mon, 17 Dec 2001 10:01:09 +1100 (EST) From: Camson <chuynh@biolateral.com.au> To: FreeBSD-gnats-submit@freebsd.org Subject: ports/32914: New Port: biology/artemis Message-ID: <200112162301.fBGN19e45945@red.biolateral.com.au>
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>Number: 32914 >Category: ports >Synopsis: New Port: biology/artemis >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun Dec 16 15:10:01 PST 2001 >Closed-Date: >Last-Modified: >Originator: Camson >Release: FreeBSD 4.4-STABLE i386 >Organization: BioLateral Pty Ltd >Environment: System: FreeBSD red.biolateral.com.au 4.4-STABLE FreeBSD 4.4-STABLE #0: Mon Dec 10 20:11:41 EST 2001 root@red.biolateral.com.au:/space/obj/usr/src/sys/GENERIC i386 >Description: Artemis is a DNA sequence viewer and annotation tool that allows visualisation of sequence features and the results of analyses within the context of the sequence, and its six-frame translation. Artemis is written in Java, reads EMBL or GENBANK format sequences and feature tables, and can work on sequences of any size. >How-To-Repeat: >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # artemis # artemis/pkg-descr # artemis/pkg-comment # artemis/distinfo # artemis/Makefile # artemis/pkg-plist # echo c - artemis mkdir -p artemis > /dev/null 2>&1 echo x - artemis/pkg-descr sed 's/^X//' >artemis/pkg-descr << 'END-of-artemis/pkg-descr' XArtemis is a DNA sequence viewer and annotation tool that allows visualisation Xof sequence features and the results of analyses within the context of the Xsequence, and its six-frame translation. Artemis is written in Java, reads XEMBL or GENBANK format sequences and feature tables, and can work on sequences Xof any size. X XWWW: http://www.sanger.ac.uk/Software/Artemis/manual END-of-artemis/pkg-descr echo x - artemis/pkg-comment sed 's/^X//' >artemis/pkg-comment << 'END-of-artemis/pkg-comment' XA DNA sequence viewer and annotation tool END-of-artemis/pkg-comment echo x - artemis/distinfo sed 's/^X//' >artemis/distinfo << 'END-of-artemis/distinfo' XMD5 (artemis_compiled_v4.tar.gz) = e970b57e993a6b6d254ae70f83e1304e END-of-artemis/distinfo echo x - artemis/Makefile sed 's/^X//' >artemis/Makefile << 'END-of-artemis/Makefile' X# New ports collection makefile for: artemis X# Date created: 10 Nov 2001 X# Whom: camson@bilateral.com.au X# X# $FreeBSD$ X# X XPORTNAME= artemis XPORTVERSION= 4.0 XCATEGORIES= biology XMASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v4/ XDISTNAME= artemis_compiled_v4 X XMAINTAINER= chuynh@biolateral.com.au X XRUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13 X XWRKSRC= ${WRKDIR}/${PORTNAME} X XJDK_VERSION= 1.3.1 XJDK_DIR= ${PREFIX}/jdk${JDK_VERSION} XJAVA_COMMAND= ${JDK_DIR}/bin/java X XNO_BUILD= yes X Xdo-install: X @${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION} X @${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf- X @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/art ${PREFIX}/bin/art X XPLIST_SUB= PORTVERSION="${PORTVERSION}" X X.include <bsd.port.mk> END-of-artemis/Makefile echo x - artemis/pkg-plist sed 's/^X//' >artemis/pkg-plist << 'END-of-artemis/pkg-plist' Xartemis-4.0/CVS/Root Xartemis-4.0/CVS/Repository Xartemis-4.0/CVS/Entries Xartemis-4.0/.cvsignore Xartemis-4.0/AppGlobal.java Xartemis-4.0/COPYING Xartemis-4.0/COPYING.JacORB Xartemis-4.0/CorbaApplet.java Xartemis-4.0/Diana.java Xartemis-4.0/INSTALL Xartemis-4.0/Makefile Xartemis-4.0/README Xartemis-4.0/art Xartemis-4.0/art.bat Xartemis-4.0/mart Xartemis-4.0/results_to_netscape Xartemis-4.0/run_blast Xartemis-4.0/run_blastn Xartemis-4.0/run_blastp Xartemis-4.0/run_blastx Xartemis-4.0/run_fasta Xartemis-4.0/run_hth Xartemis-4.0/run_jalview Xartemis-4.0/run_sigcleave Xartemis-4.0/run_tblastn Xartemis-4.0/run_tblastx Xartemis-4.0/META-INF/CVS/Root Xartemis-4.0/META-INF/CVS/Repository Xartemis-4.0/META-INF/CVS/Entries Xartemis-4.0/META-INF/MANIFEST.MF Xartemis-4.0/collections/CVS/Root Xartemis-4.0/collections/CVS/Repository Xartemis-4.0/collections/CVS/Entries Xartemis-4.0/collections/ArrayEnumeration.java Xartemis-4.0/collections/Assertable.java Xartemis-4.0/collections/Bag.java Xartemis-4.0/collections/BinaryFunction.java Xartemis-4.0/collections/CEImpl.java Xartemis-4.0/collections/CLCell.java Xartemis-4.0/collections/CLEnumeration.java Xartemis-4.0/collections/Cell.java Xartemis-4.0/collections/CheckedBag.java Xartemis-4.0/collections/CheckedCollection.java Xartemis-4.0/collections/CheckedMap.java Xartemis-4.0/collections/CheckedSeq.java Xartemis-4.0/collections/CheckedSet.java Xartemis-4.0/collections/Keyed.java Xartemis-4.0/collections/CircularList.java Xartemis-4.0/collections/Collection.java Xartemis-4.0/collections/CollectionEnumeration.java Xartemis-4.0/collections/Comparator.java Xartemis-4.0/collections/Dynarray.java Xartemis-4.0/collections/CorruptedEnumerationException.java Xartemis-4.0/collections/DAEnumeration.java Xartemis-4.0/collections/DefaultComparator.java Xartemis-4.0/collections/DefaultImplementations.java Xartemis-4.0/collections/ElementSortedCollection.java Xartemis-4.0/collections/FilteringEnumeration.java Xartemis-4.0/collections/Function.java Xartemis-4.0/collections/HTEnumeration.java Xartemis-4.0/collections/HTPairEnumeration.java Xartemis-4.0/collections/HashTableParams.java Xartemis-4.0/collections/HashedMap.java Xartemis-4.0/collections/HashedSet.java Xartemis-4.0/collections/IllegalElementException.java Xartemis-4.0/collections/Immutable.java Xartemis-4.0/collections/ImplementationCheckable.java Xartemis-4.0/collections/IncrBag.java Xartemis-4.0/collections/ImplementationError.java Xartemis-4.0/collections/IncrCollectionEnumeration.java Xartemis-4.0/collections/IncrImpl.java Xartemis-4.0/collections/IncrMap.java Xartemis-4.0/collections/IncrSeq.java Xartemis-4.0/collections/IncrSet.java Xartemis-4.0/collections/InterleavingEnumeration.java Xartemis-4.0/collections/KeySortedCollection.java Xartemis-4.0/collections/LBEnumeration.java Xartemis-4.0/collections/LLCell.java Xartemis-4.0/collections/LLCellEnumeration.java Xartemis-4.0/collections/LLMap.java Xartemis-4.0/collections/LLPair.java Xartemis-4.0/collections/LLPairEnumeration.java Xartemis-4.0/collections/LinkedBuffer.java Xartemis-4.0/collections/LinkedList.java Xartemis-4.0/collections/Map.java Xartemis-4.0/collections/MappingEnumeration.java Xartemis-4.0/collections/Pair.java Xartemis-4.0/collections/Predicate.java Xartemis-4.0/collections/Procedure.java Xartemis-4.0/collections/RBCell.java Xartemis-4.0/collections/RBCellEnumeration.java Xartemis-4.0/collections/RBMap.java Xartemis-4.0/collections/RBPair.java Xartemis-4.0/collections/RBPairEnumeration.java Xartemis-4.0/collections/RBTree.java Xartemis-4.0/collections/Seq.java Xartemis-4.0/collections/Set.java Xartemis-4.0/collections/SimpleTest.java Xartemis-4.0/collections/SortableCollection.java Xartemis-4.0/collections/UpdatableBag.java Xartemis-4.0/collections/UpdatableBagImpl.java Xartemis-4.0/collections/UpdatableCollection.java Xartemis-4.0/collections/UpdatableImpl.java Xartemis-4.0/collections/UpdatableMap.java Xartemis-4.0/collections/UpdatableMapImpl.java Xartemis-4.0/collections/javaMake Xartemis-4.0/collections/UpdatableSeq.java Xartemis-4.0/collections/UpdatableSeqImpl.java Xartemis-4.0/collections/UpdatableSet.java Xartemis-4.0/collections/UpdatableSetImpl.java Xartemis-4.0/collections/collections_Dynarray.h Xartemis-4.0/collections/Dynarray.class Xartemis-4.0/collections/UpdatableSeqImpl.class Xartemis-4.0/collections/UpdatableSeq.class Xartemis-4.0/collections/SortableCollection.class Xartemis-4.0/collections/Seq.class Xartemis-4.0/collections/UpdatableImpl.class Xartemis-4.0/collections/UpdatableCollection.class Xartemis-4.0/collections/IllegalElementException.class Xartemis-4.0/collections/CorruptedEnumerationException.class Xartemis-4.0/collections/ImplementationError.class Xartemis-4.0/collections/Collection.class Xartemis-4.0/collections/Assertable.class Xartemis-4.0/collections/ImplementationCheckable.class Xartemis-4.0/collections/Comparator.class Xartemis-4.0/collections/Predicate.class Xartemis-4.0/collections/CollectionEnumeration.class Xartemis-4.0/collections/DAEnumeration.class Xartemis-4.0/collections/CEImpl.class Xartemis-4.0/collections/KeySortedCollection.class Xartemis-4.0/collections/Map.class Xartemis-4.0/collections/ElementSortedCollection.class Xartemis-4.0/collections/Bag.class Xartemis-4.0/collections/Set.class Xartemis-4.0/collections/RBTree.class Xartemis-4.0/collections/UpdatableBagImpl.class Xartemis-4.0/collections/UpdatableBag.class Xartemis-4.0/collections/RBCell.class Xartemis-4.0/collections/Cell.class Xartemis-4.0/collections/DefaultComparator.class Xartemis-4.0/collections/RBCellEnumeration.class Xartemis-4.0/collections/Keyed.class Xartemis-4.0/corba/CVS/Root Xartemis-4.0/corba/CVS/Repository Xartemis-4.0/corba/CVS/Entries Xartemis-4.0/corba/apollo.idl Xartemis-4.0/corba/ensembl.idl Xartemis-4.0/corba/nsdb.idl Xartemis-4.0/corba/nsdb_write.idl Xartemis-4.0/corba/seqdb.idl Xartemis-4.0/corba/types.idl Xartemis-4.0/diana/CVS/Root Xartemis-4.0/diana/CVS/Repository Xartemis-4.0/diana/CVS/Entries Xartemis-4.0/diana/AlignMatch.java Xartemis-4.0/diana/AlignMatchVector.java Xartemis-4.0/diana/ChangeEvent.java Xartemis-4.0/diana/ChangeListener.java Xartemis-4.0/diana/ClipBoard.java Xartemis-4.0/diana/ComparisonData.java Xartemis-4.0/diana/ComparisonDataFactory.java Xartemis-4.0/diana/ComparisonDataParseException.java Xartemis-4.0/diana/Entry.java Xartemis-4.0/diana/EntryChangeEvent.java Xartemis-4.0/diana/EntryChangeListener.java Xartemis-4.0/diana/EntryGroup.java Xartemis-4.0/diana/EntryGroupChangeEvent.java Xartemis-4.0/diana/EntryGroupChangeListener.java Xartemis-4.0/diana/EntrySource.java Xartemis-4.0/diana/plot/CVS/Root Xartemis-4.0/diana/plot/CVS/Repository Xartemis-4.0/diana/plot/CVS/Entries Xartemis-4.0/diana/plot/AGWindowAlgorithm.java Xartemis-4.0/diana/plot/ATDeviationAlgorithm.java Xartemis-4.0/diana/plot/Algorithm.java Xartemis-4.0/diana/plot/BaseAlgorithm.java Xartemis-4.0/diana/plot/Codon12CorrelationAlgorithm.java Xartemis-4.0/diana/plot/CodonUsageAlgorithm.java Xartemis-4.0/diana/plot/CodonUsageFormatException.java Xartemis-4.0/diana/plot/CodonUsageWeight.java Xartemis-4.0/diana/plot/CodonWeight.java Xartemis-4.0/diana/plot/CoilFeatureAlgorithm.java Xartemis-4.0/diana/plot/HydroAlgorithm.java Xartemis-4.0/diana/plot/FeatureAlgorithm.java Xartemis-4.0/diana/plot/GCDeviationAlgorithm.java Xartemis-4.0/diana/plot/GCFrameAlgorithm.java Xartemis-4.0/diana/plot/GCSDWindowAlgorithm.java Xartemis-4.0/diana/plot/GCWindowAlgorithm.java Xartemis-4.0/diana/plot/HydrophilicityAlgorithm.java Xartemis-4.0/diana/plot/HydrophobicityAlgorithm.java Xartemis-4.0/diana/plot/UserDataAlgorithm.java Xartemis-4.0/diana/plot/CodonUsageAlgorithm.class Xartemis-4.0/diana/plot/BaseAlgorithm.class Xartemis-4.0/diana/plot/Algorithm.class Xartemis-4.0/diana/plot/UserDataAlgorithm.class Xartemis-4.0/diana/plot/CodonUsageWeight.class Xartemis-4.0/diana/plot/CodonWeight.class Xartemis-4.0/diana/plot/GCWindowAlgorithm.class Xartemis-4.0/diana/plot/GCSDWindowAlgorithm.class Xartemis-4.0/diana/plot/AGWindowAlgorithm.class Xartemis-4.0/diana/plot/GCFrameAlgorithm.class Xartemis-4.0/diana/plot/Codon12CorrelationAlgorithm.class Xartemis-4.0/diana/plot/GCDeviationAlgorithm.class Xartemis-4.0/diana/plot/ATDeviationAlgorithm.class Xartemis-4.0/diana/plot/CodonUsageFormatException.class Xartemis-4.0/diana/plot/FeatureAlgorithm.class Xartemis-4.0/diana/plot/HydroAlgorithm.class Xartemis-4.0/diana/plot/HydrophobicityAlgorithm.class Xartemis-4.0/diana/plot/HydrophilicityAlgorithm.class Xartemis-4.0/diana/plot/CoilFeatureAlgorithm.class Xartemis-4.0/diana/EntrySourceVector.java Xartemis-4.0/diana/EntryVector.java Xartemis-4.0/diana/ExternalApplication.java Xartemis-4.0/diana/ExternalProgram.java Xartemis-4.0/diana/ExternalProgramException.java Xartemis-4.0/diana/ExternalProgramVector.java Xartemis-4.0/diana/ExternalSearchProgram.java Xartemis-4.0/diana/Feature.java Xartemis-4.0/diana/FeatureChangeEvent.java Xartemis-4.0/diana/FeatureChangeListener.java Xartemis-4.0/diana/FeatureEnumeration.java Xartemis-4.0/diana/FeatureFromVectorPredicate.java Xartemis-4.0/diana/FeatureKeyPredicate.java Xartemis-4.0/diana/FeatureKeyQualifierPredicate.java Xartemis-4.0/diana/FeatureSegment.java Xartemis-4.0/diana/FeaturePredicate.java Xartemis-4.0/diana/FeatureSegmentVector.java Xartemis-4.0/diana/FeatureVector.java Xartemis-4.0/diana/FilteredEntryGroup.java Xartemis-4.0/diana/GotoEvent.java Xartemis-4.0/diana/GotoEventSource.java Xartemis-4.0/diana/GotoListener.java Xartemis-4.0/diana/LastSegmentException.java Xartemis-4.0/diana/Logger.java Xartemis-4.0/diana/MSPcrunchComparisonData.java Xartemis-4.0/diana/MUMmerComparisonData.java Xartemis-4.0/diana/Options.java Xartemis-4.0/diana/Selectable.java Xartemis-4.0/diana/Selection.java Xartemis-4.0/diana/SelectionChangeEvent.java Xartemis-4.0/diana/SelectionChangeListener.java Xartemis-4.0/diana/helix.gif Xartemis-4.0/diana/SimpleComparisonData.java Xartemis-4.0/diana/SimpleEntryGroup.java Xartemis-4.0/diana/SimpleGotoEventSource.java Xartemis-4.0/diana/sanger-centre.gif Xartemis-4.0/diana/components/CVS/Root Xartemis-4.0/diana/components/CVS/Repository Xartemis-4.0/diana/components/CVS/Entries Xartemis-4.0/diana/components/ActMain.java Xartemis-4.0/diana/components/AddMenu.java Xartemis-4.0/diana/components/AlignmentViewer.java Xartemis-4.0/diana/components/ArtemisMain.java Xartemis-4.0/diana/components/BasePlot.java Xartemis-4.0/diana/components/BasePlotGroup.java Xartemis-4.0/diana/components/CanvasPanel.java Xartemis-4.0/diana/components/Comparator.java Xartemis-4.0/diana/components/ComparatorDialog.java Xartemis-4.0/diana/components/CorbaEntrySource.java Xartemis-4.0/diana/components/DisplayAdjustmentEvent.java Xartemis-4.0/diana/components/DisplayAdjustmentListener.java Xartemis-4.0/diana/components/DisplayComponent.java Xartemis-4.0/diana/components/EMBLCorbaEntrySource.java Xartemis-4.0/diana/components/EditMenu.java Xartemis-4.0/diana/components/EnsemblEntrySource.java Xartemis-4.0/diana/components/EntryActionListener.java Xartemis-4.0/diana/components/EntryEdit.java Xartemis-4.0/diana/components/EntryEditVector.java Xartemis-4.0/diana/components/EntryFileDialog.java Xartemis-4.0/diana/components/EntryGroupDisplay.java Xartemis-4.0/diana/components/EntryGroupInfoDisplay.java Xartemis-4.0/diana/components/EntryGroupMenu.java Xartemis-4.0/diana/components/EntryGroupPanel.java Xartemis-4.0/diana/components/EntryHeaderEdit.java Xartemis-4.0/diana/components/ExternalProgramOptions.java Xartemis-4.0/diana/components/FeatureAminoAcidViewer.java Xartemis-4.0/diana/components/FeatureBaseViewer.java Xartemis-4.0/diana/components/FeatureDisplay.java Xartemis-4.0/diana/components/FeatureDisplayOwner.java Xartemis-4.0/diana/components/FeatureEdit.java Xartemis-4.0/diana/components/FeatureInfo.java Xartemis-4.0/diana/components/FeatureList.java Xartemis-4.0/diana/components/FeatureListFrame.java Xartemis-4.0/diana/components/FeaturePlot.java Xartemis-4.0/diana/components/FeaturePlotGroup.java Xartemis-4.0/diana/components/FeaturePopup.java Xartemis-4.0/diana/components/FeatureViewer.java Xartemis-4.0/diana/components/FileDialogEntrySource.java Xartemis-4.0/diana/components/FileViewer.java Xartemis-4.0/diana/components/GotoMenu.java Xartemis-4.0/diana/components/KeyChoice.java Xartemis-4.0/diana/components/KeyChooser.java Xartemis-4.0/diana/components/ListDialog.java Xartemis-4.0/diana/components/LogViewer.java Xartemis-4.0/diana/components/MarkerRangeRequester.java Xartemis-4.0/diana/components/MarkerRangeRequesterEvent.java Xartemis-4.0/diana/components/MarkerRangeRequesterListener.java Xartemis-4.0/diana/components/MessageDialog.java Xartemis-4.0/diana/components/MessageFrame.java Xartemis-4.0/diana/components/Navigator.java Xartemis-4.0/diana/components/Plot.java Xartemis-4.0/diana/components/PlotMouseListener.java Xartemis-4.0/diana/components/ProcessWatcher.java Xartemis-4.0/diana/components/ProcessWatcherEvent.java Xartemis-4.0/diana/components/ProcessWatcherListener.java Xartemis-4.0/diana/components/QualifierChoice.java Xartemis-4.0/diana/components/RawFeatureEdit.java Xartemis-4.0/diana/components/RunMenu.java Xartemis-4.0/diana/components/ScoreChangeEvent.java Xartemis-4.0/diana/components/ScoreChangeListener.java Xartemis-4.0/diana/components/ScoreChanger.java Xartemis-4.0/diana/components/ScoreScrollbar.java Xartemis-4.0/diana/components/SearchResultViewer.java Xartemis-4.0/diana/components/SelectMenu.java Xartemis-4.0/diana/components/SelectionInfoDisplay.java Xartemis-4.0/diana/components/SelectionMenu.java Xartemis-4.0/diana/components/SelectionViewer.java Xartemis-4.0/diana/components/Selector.java Xartemis-4.0/diana/components/SequenceViewer.java Xartemis-4.0/diana/components/Splash.java Xartemis-4.0/diana/components/TextDialog.java Xartemis-4.0/diana/components/TextRequester.java Xartemis-4.0/diana/components/TextRequesterEvent.java Xartemis-4.0/diana/components/TextRequesterListener.java Xartemis-4.0/diana/components/ViewMenu.java Xartemis-4.0/diana/components/WritableEMBLCorbaEntrySource.java Xartemis-4.0/diana/components/WriteMenu.java Xartemis-4.0/diana/components/Plot.class Xartemis-4.0/diana/components/YesNoDialog.java Xartemis-4.0/diana/components/ArtemisMain.class Xartemis-4.0/diana/components/ArtemisMain$1.class Xartemis-4.0/diana/components/ArtemisMain$2.class Xartemis-4.0/diana/components/ArtemisMain$3.class Xartemis-4.0/diana/components/ArtemisMain$4.class Xartemis-4.0/diana/components/ArtemisMain$5.class Xartemis-4.0/diana/components/ArtemisMain$6.class Xartemis-4.0/diana/components/Splash.class Xartemis-4.0/diana/components/Splash$1.class Xartemis-4.0/diana/components/Splash$2.class Xartemis-4.0/diana/components/Splash$3.class Xartemis-4.0/diana/components/EntryEditVector.class Xartemis-4.0/diana/components/LogViewer.class Xartemis-4.0/diana/components/LogViewer$1.class Xartemis-4.0/diana/components/EntryEdit.class Xartemis-4.0/diana/components/EntryEdit$1.class Xartemis-4.0/diana/components/EntryEdit$2.class Xartemis-4.0/diana/components/EntryEdit$3.class Xartemis-4.0/diana/components/EntryEdit$4.class Xartemis-4.0/diana/components/EntryEdit$5.class Xartemis-4.0/diana/components/EntryEdit$6.class Xartemis-4.0/diana/components/EntryEdit$7.class Xartemis-4.0/diana/components/EntryEdit$8.class Xartemis-4.0/diana/components/EntryEdit$9.class Xartemis-4.0/diana/components/EntryEdit$10.class Xartemis-4.0/diana/components/EntryEdit$11.class Xartemis-4.0/diana/components/EntryEdit$12.class Xartemis-4.0/diana/components/EntryEdit$13.class Xartemis-4.0/diana/components/EntryEdit$14.class Xartemis-4.0/diana/components/EntryEdit$15.class Xartemis-4.0/diana/components/ReadFeaturesActionListener.class Xartemis-4.0/diana/components/SaveEntryActionListener.class Xartemis-4.0/diana/components/SaveEntryAsActionListener.class Xartemis-4.0/diana/components/SaveEntryAsEMBLActionListener.class Xartemis-4.0/diana/components/SaveEntryAsGenbankActionListener.class Xartemis-4.0/diana/components/SaveEntryAsGFFActionListener.class Xartemis-4.0/diana/components/SaveEntryAsSubmissionActionListener.class Xartemis-4.0/diana/components/MessageDialog.class Xartemis-4.0/diana/components/FeatureDisplayOwner.class Xartemis-4.0/diana/components/EntryFileDialog.class Xartemis-4.0/diana/components/MessageDialog$1.class Xartemis-4.0/diana/components/MessageDialog$2.class Xartemis-4.0/diana/components/MessageDialog$3.class Xartemis-4.0/diana/components/FileDialogEntrySource.class Xartemis-4.0/diana/components/EMBLCorbaEntrySource.class Xartemis-4.0/diana/components/CorbaEntrySource.class Xartemis-4.0/diana/components/WritableEMBLCorbaEntrySource.class Xartemis-4.0/diana/components/FileViewer.class Xartemis-4.0/diana/components/FileViewer$1.class Xartemis-4.0/diana/components/FileViewer$2.class Xartemis-4.0/diana/components/FileViewer$3.class Xartemis-4.0/diana/components/MessageFrame.class Xartemis-4.0/diana/components/MessageFrame$1.class Xartemis-4.0/diana/components/MessageFrame$2.class Xartemis-4.0/diana/components/MessageFrame$3.class Xartemis-4.0/diana/components/ViewMenu.class Xartemis-4.0/diana/components/ViewMenu$1.class Xartemis-4.0/diana/components/ViewMenu$2.class Xartemis-4.0/diana/components/ViewMenu$3.class Xartemis-4.0/diana/components/ViewMenu$4.class Xartemis-4.0/diana/components/ViewMenu$5.class Xartemis-4.0/diana/components/ViewMenu$6.class Xartemis-4.0/diana/components/ViewMenu$7.class Xartemis-4.0/diana/components/ViewMenu$8.class Xartemis-4.0/diana/components/ViewMenu$9.class Xartemis-4.0/diana/components/ViewMenu$10.class Xartemis-4.0/diana/components/ViewMenu$11.class Xartemis-4.0/diana/components/ViewMenu$12.class Xartemis-4.0/diana/components/ViewMenu$13.class Xartemis-4.0/diana/components/ViewMenu$14.class Xartemis-4.0/diana/components/ViewMenu$15.class Xartemis-4.0/diana/components/ViewMenu$16.class Xartemis-4.0/diana/components/ViewMenu$17.class Xartemis-4.0/diana/components/ViewMenu$18.class Xartemis-4.0/diana/components/ViewMenu$19.class Xartemis-4.0/diana/components/ViewMenu$20.class Xartemis-4.0/diana/components/ViewMenu$21.class Xartemis-4.0/diana/components/ViewMenu$22.class Xartemis-4.0/diana/components/ViewMenu$23.class Xartemis-4.0/diana/components/ViewMenu$24.class Xartemis-4.0/diana/components/ViewMenu$25.class Xartemis-4.0/diana/components/ViewMenu$26.class Xartemis-4.0/diana/components/ViewMenu$27.class Xartemis-4.0/diana/components/ViewMenu$28.class Xartemis-4.0/diana/components/ViewMenu$29.class Xartemis-4.0/diana/components/SelectionMenu.class Xartemis-4.0/diana/components/AddMenu.class Xartemis-4.0/diana/components/AddMenu$1.class Xartemis-4.0/diana/components/AddMenu$2.class Xartemis-4.0/diana/components/AddMenu$3.class Xartemis-4.0/diana/components/AddMenu$4.class Xartemis-4.0/diana/components/AddMenu$5.class Xartemis-4.0/diana/components/AddMenu$6.class Xartemis-4.0/diana/components/AddMenu$7.class Xartemis-4.0/diana/components/AddMenu$8.class Xartemis-4.0/diana/components/AddMenu$9.class Xartemis-4.0/diana/components/AddMenu$10.class Xartemis-4.0/diana/components/AddMenu$11.class Xartemis-4.0/diana/components/AddMenu$12.class Xartemis-4.0/diana/components/AddMenu$13.class Xartemis-4.0/diana/components/AddMenu$14.class Xartemis-4.0/diana/components/AddMenu$15.class Xartemis-4.0/diana/components/EntryGroupDisplay.class Xartemis-4.0/diana/components/EntryGroupDisplay$1.class Xartemis-4.0/diana/components/EntryGroupDisplay$2.class Xartemis-4.0/diana/components/FeatureDisplay.class Xartemis-4.0/diana/components/GotoMenu.class Xartemis-4.0/diana/components/FeatureDisplay$1.class Xartemis-4.0/diana/components/FeatureDisplay$2.class Xartemis-4.0/diana/components/EditMenu.class Xartemis-4.0/diana/components/FeatureDisplay$3.class Xartemis-4.0/diana/components/FeatureDisplay$4.class Xartemis-4.0/diana/components/FeatureDisplay$5.class Xartemis-4.0/diana/components/FeatureDisplay$6.class Xartemis-4.0/diana/components/EntryGroupPanel.class Xartemis-4.0/diana/components/DisplayComponent.class Xartemis-4.0/diana/components/EntryGroupPanel$1.class Xartemis-4.0/diana/components/CanvasPanel.class Xartemis-4.0/diana/components/CanvasPanel$1.class Xartemis-4.0/diana/components/BasePlotGroup.class Xartemis-4.0/diana/components/SelectionInfoDisplay.class Xartemis-4.0/diana/components/DisplayAdjustmentListener.class Xartemis-4.0/diana/components/FeatureList.class Xartemis-4.0/diana/components/FeatureList$1.class Xartemis-4.0/diana/components/FeatureList$2.class Xartemis-4.0/diana/components/FeatureList$3.class Xartemis-4.0/diana/components/YesNoDialog.class Xartemis-4.0/diana/components/YesNoDialog$1.class Xartemis-4.0/diana/components/YesNoDialog$2.class Xartemis-4.0/diana/components/YesNoDialog$3.class Xartemis-4.0/diana/components/EntryGroupMenu.class Xartemis-4.0/diana/components/EntryGroupMenu$1.class Xartemis-4.0/diana/components/EntryGroupMenu$2.class Xartemis-4.0/diana/components/EntryGroupMenu$3.class Xartemis-4.0/diana/components/EntryGroupMenu$4.class Xartemis-4.0/diana/components/EntryGroupMenu$5.class Xartemis-4.0/diana/components/EntryGroupMenu$6.class Xartemis-4.0/diana/components/SelectMenu.class Xartemis-4.0/diana/components/SelectMenu$1.class Xartemis-4.0/diana/components/SelectMenu$2.class Xartemis-4.0/diana/components/SelectMenu$3.class Xartemis-4.0/diana/components/SelectMenu$4.class Xartemis-4.0/diana/components/SelectMenu$5.class Xartemis-4.0/diana/components/SelectMenu$6.class Xartemis-4.0/diana/components/SelectMenu$7.class Xartemis-4.0/diana/components/SelectMenu$8.class Xartemis-4.0/diana/components/SelectMenu$9.class Xartemis-4.0/diana/components/SelectMenu$10.class Xartemis-4.0/diana/components/SelectMenu$11.class Xartemis-4.0/diana/components/SelectMenu$12.class Xartemis-4.0/diana/components/SelectMenu$13.class Xartemis-4.0/diana/components/SelectMenu$14.class Xartemis-4.0/diana/components/SelectMenu$15.class Xartemis-4.0/diana/components/SelectMenu$16.class Xartemis-4.0/diana/components/GotoMenu$1.class Xartemis-4.0/diana/components/GotoMenu$2.class Xartemis-4.0/diana/components/GotoMenu$3.class Xartemis-4.0/diana/components/GotoMenu$4.class Xartemis-4.0/diana/components/GotoMenu$5.class Xartemis-4.0/diana/components/GotoMenu$6.class Xartemis-4.0/diana/components/GotoMenu$7.class Xartemis-4.0/diana/components/GotoMenu$8.class Xartemis-4.0/diana/components/GotoMenu$9.class Xartemis-4.0/diana/components/GotoMenu$10.class Xartemis-4.0/diana/components/EditMenu$1.class Xartemis-4.0/diana/components/EditMenu$2.class Xartemis-4.0/diana/components/EditMenu$3.class Xartemis-4.0/diana/components/EditMenu$4.class Xartemis-4.0/diana/components/EditMenu$5.class Xartemis-4.0/diana/components/EditMenu$6.class Xartemis-4.0/diana/components/EditMenu$7.class Xartemis-4.0/diana/components/EditMenu$8.class Xartemis-4.0/diana/components/EditMenu$9.class Xartemis-4.0/diana/components/EditMenu$10.class Xartemis-4.0/diana/components/EditMenu$11.class Xartemis-4.0/diana/components/EditMenu$12.class Xartemis-4.0/diana/components/EditMenu$13.class Xartemis-4.0/diana/components/EditMenu$14.class Xartemis-4.0/diana/components/EditMenu$15.class Xartemis-4.0/diana/components/EditMenu$16.class Xartemis-4.0/diana/components/EditMenu$17.class Xartemis-4.0/diana/components/EditMenu$18.class Xartemis-4.0/diana/components/EditMenu$19.class Xartemis-4.0/diana/components/EditMenu$20.class Xartemis-4.0/diana/components/EditMenu$21.class Xartemis-4.0/diana/components/EditMenu$22.class Xartemis-4.0/diana/components/WriteMenu.class Xartemis-4.0/diana/components/WriteMenu$1.class Xartemis-4.0/diana/components/WriteMenu$2.class Xartemis-4.0/diana/components/WriteMenu$3.class Xartemis-4.0/diana/components/WriteMenu$4.class Xartemis-4.0/diana/components/WriteMenu$5.class Xartemis-4.0/diana/components/WriteMenu$6.class Xartemis-4.0/diana/components/WriteMenu$7.class Xartemis-4.0/diana/components/WriteMenu$8.class Xartemis-4.0/diana/components/WriteMenu$9.class Xartemis-4.0/diana/components/WriteMenu$10.class Xartemis-4.0/diana/components/WriteMenu$11.class Xartemis-4.0/diana/components/WriteMenu$12.class Xartemis-4.0/diana/components/WriteMenu$13.class Xartemis-4.0/diana/components/WriteMenu$14.class Xartemis-4.0/diana/components/WriteMenu$15.class Xartemis-4.0/diana/components/WriteMenu$16.class Xartemis-4.0/diana/components/WriteMenu$17.class Xartemis-4.0/diana/components/WriteMenu$18.class Xartemis-4.0/diana/components/WriteMenu$19.class Xartemis-4.0/diana/components/WriteMenu$20.class Xartemis-4.0/diana/components/WriteMenu$21.class Xartemis-4.0/diana/components/RunMenu.class Xartemis-4.0/diana/components/RunMenu$1.class Xartemis-4.0/diana/components/RunMenu$2.class Xartemis-4.0/diana/components/EntryActionListener.class Xartemis-4.0/diana/components/BasePlot.class Xartemis-4.0/diana/components/BasePlot$1.class Xartemis-4.0/diana/components/Plot$1.class Xartemis-4.0/diana/components/Plot$2.class Xartemis-4.0/diana/components/Plot$3.class Xartemis-4.0/diana/components/Plot$4.class Xartemis-4.0/diana/components/Plot$5.class Xartemis-4.0/diana/components/Plot$6.class Xartemis-4.0/diana/components/Plot$7.class Xartemis-4.0/diana/components/TextDialog.class Xartemis-4.0/diana/components/TextDialog$1.class Xartemis-4.0/diana/components/TextDialog$2.class Xartemis-4.0/diana/components/TextDialog$3.class Xartemis-4.0/diana/components/ListDialog.class Xartemis-4.0/diana/components/ListDialog$1.class Xartemis-4.0/diana/components/ListDialog$2.class Xartemis-4.0/diana/components/SelectionViewer.class Xartemis-4.0/diana/components/SelectionViewer$1.class Xartemis-4.0/diana/components/EntryGroupInfoDisplay.class Xartemis-4.0/diana/components/EntryGroupInfoDisplay$1.class Xartemis-4.0/diana/components/EntryGroupInfoDisplay$2.class Xartemis-4.0/diana/components/EntryGroupInfoDisplay$3.class Xartemis-4.0/diana/components/FeatureListFrame.class Xartemis-4.0/diana/components/FeatureListFrame$1.class Xartemis-4.0/diana/components/FeatureListFrame$2.class Xartemis-4.0/diana/components/FeatureListFrame$3.class Xartemis-4.0/diana/components/KeyChooser.class Xartemis-4.0/diana/components/KeyChooser$1.class Xartemis-4.0/diana/components/KeyChooser$2.class Xartemis-4.0/diana/components/KeyChooser$3.class Xartemis-4.0/diana/components/KeyChooser$4.class Xartemis-4.0/diana/components/KeyChoice.class Xartemis-4.0/diana/components/KeyChoice$1.class Xartemis-4.0/diana/components/FeatureViewer.class Xartemis-4.0/diana/components/FeatureViewer$1.class Xartemis-4.0/diana/components/FeaturePlotGroup.class Xartemis-4.0/diana/components/FeaturePlotGroup$1.class Xartemis-4.0/diana/components/FeaturePlotGroup$2.class Xartemis-4.0/diana/components/FeaturePlotGroup$3.class Xartemis-4.0/diana/components/FeaturePlotGroup$4.class Xartemis-4.0/diana/components/FeaturePlotGroup$5.class Xartemis-4.0/diana/components/SearchResultViewer.class Xartemis-4.0/diana/components/SearchResultViewer$1.class Xartemis-4.0/diana/components/FeatureInfo.class Xartemis-4.0/diana/components/FeatureInfo$1.class Xartemis-4.0/diana/components/FeatureInfo$2.class Xartemis-4.0/diana/components/FeatureBaseViewer.class Xartemis-4.0/diana/components/FeatureBaseViewer$1.class Xartemis-4.0/diana/components/FeatureAminoAcidViewer.class Xartemis-4.0/diana/components/FeatureAminoAcidViewer$1.class Xartemis-4.0/diana/components/FeatureEdit.class Xartemis-4.0/diana/components/FeatureEdit$1.class Xartemis-4.0/diana/components/FeatureEdit$2.class Xartemis-4.0/diana/components/FeatureEdit$3.class Xartemis-4.0/diana/components/FeatureEdit$4.class Xartemis-4.0/diana/components/FeatureEdit$5.class Xartemis-4.0/diana/components/FeatureEdit$6.class Xartemis-4.0/diana/components/FeatureEdit$7.class Xartemis-4.0/diana/components/FeatureEdit$8.class Xartemis-4.0/diana/components/FeatureEdit$9.class Xartemis-4.0/diana/components/FeatureEdit$10.class Xartemis-4.0/diana/components/TextRequester.class Xartemis-4.0/diana/components/TextRequester$1.class Xartemis-4.0/diana/components/TextRequester$2.class Xartemis-4.0/diana/components/TextRequester$3.class Xartemis-4.0/diana/components/TextRequesterListener.class Xartemis-4.0/diana/components/TextRequesterEvent.class Xartemis-4.0/diana/components/FeaturePopup.class Xartemis-4.0/diana/components/FeaturePopup$1.class Xartemis-4.0/diana/components/FeaturePopup$2.class Xartemis-4.0/diana/components/Selector.class Xartemis-4.0/diana/components/FeaturePopup$3.class Xartemis-4.0/diana/components/FeaturePopup$4.class Xartemis-4.0/diana/components/FeaturePopup$5.class Xartemis-4.0/diana/components/FeaturePopup$6.class Xartemis-4.0/diana/components/FeaturePopup$7.class Xartemis-4.0/diana/components/FeaturePopup$8.class Xartemis-4.0/diana/components/FeaturePopup$9.class Xartemis-4.0/diana/components/FeaturePopup$10.class Xartemis-4.0/diana/components/FeaturePopup$11.class Xartemis-4.0/diana/components/FeaturePopup$12.class Xartemis-4.0/diana/components/FeaturePopup$13.class Xartemis-4.0/diana/components/FeaturePopup$14.class Xartemis-4.0/diana/components/FeaturePopup$15.class Xartemis-4.0/diana/components/FeaturePopup$16.class Xartemis-4.0/diana/components/FeaturePopup$17.class Xartemis-4.0/diana/components/FeaturePopup$18.class Xartemis-4.0/diana/components/FeaturePopup$19.class Xartemis-4.0/diana/components/FeaturePopup$20.class Xartemis-4.0/diana/components/FeaturePopup$21.class Xartemis-4.0/diana/components/DisplayAdjustmentEvent.class Xartemis-4.0/diana/components/EntryHeaderEdit.class Xartemis-4.0/diana/components/EntryHeaderEdit$1.class Xartemis-4.0/diana/components/Selector$1.class Xartemis-4.0/diana/components/Selector$2.class Xartemis-4.0/diana/components/Selector$3.class Xartemis-4.0/diana/components/Selector$4.class Xartemis-4.0/diana/components/Selector$5.class Xartemis-4.0/diana/components/Selector$6.class Xartemis-4.0/diana/components/Selector$7.class Xartemis-4.0/diana/components/Selector$8.class Xartemis-4.0/diana/components/Selector$9.class Xartemis-4.0/diana/components/Selector$10.class Xartemis-4.0/diana/components/Selector$11.class Xartemis-4.0/diana/components/Selector$12.class Xartemis-4.0/diana/components/MarkerRangeRequester.class Xartemis-4.0/diana/components/MarkerRangeRequesterListener.class Xartemis-4.0/diana/components/MarkerRangeRequesterEvent.class Xartemis-4.0/diana/components/Navigator.class Xartemis-4.0/diana/components/Navigator$1.class Xartemis-4.0/diana/components/Navigator$2.class Xartemis-4.0/diana/components/Navigator$3.class Xartemis-4.0/diana/components/Navigator$4.class Xartemis-4.0/diana/components/Navigator$5.class Xartemis-4.0/diana/components/Navigator$6.class Xartemis-4.0/diana/components/Navigator$7.class Xartemis-4.0/diana/components/Navigator$8.class Xartemis-4.0/diana/components/Navigator$9.class Xartemis-4.0/diana/components/ProcessWatcher.class Xartemis-4.0/diana/components/ExternalProgramOptions.class Xartemis-4.0/diana/components/ExternalProgramOptions$1.class Xartemis-4.0/diana/components/PlotMouseListener.class Xartemis-4.0/diana/components/FeaturePlot.class Xartemis-4.0/diana/components/SequenceViewer.class Xartemis-4.0/diana/components/QualifierChoice.class Xartemis-4.0/diana/components/ProcessWatcherListener.class Xartemis-4.0/diana/components/ProcessWatcherEvent.class Xartemis-4.0/diana/components/ScoreChangeListener.class Xartemis-4.0/diana/components/ScoreChangeEvent.class Xartemis-4.0/diana/components/ScoreChanger.class Xartemis-4.0/diana/components/ScoreChanger$1.class Xartemis-4.0/diana/components/ScoreChanger$2.class Xartemis-4.0/diana/components/ScoreChanger$3.class Xartemis-4.0/diana/components/ScoreChanger$4.class Xartemis-4.0/diana/components/ScoreChanger$5.class Xartemis-4.0/diana/components/ScoreScrollbar.class Xartemis-4.0/diana/sequence/CVS/Root Xartemis-4.0/diana/sequence/CVS/Repository Xartemis-4.0/diana/sequence/CVS/Entries Xartemis-4.0/diana/sequence/AminoAcidSequence.java Xartemis-4.0/diana/sequence/BasePattern.java Xartemis-4.0/diana/sequence/BasePatternFormatException.java Xartemis-4.0/diana/sequence/Bases.java Xartemis-4.0/diana/sequence/Marker.java Xartemis-4.0/diana/sequence/MarkerChangeEvent.java Xartemis-4.0/diana/sequence/MarkerChangeListener.java Xartemis-4.0/diana/sequence/MarkerRange.java Xartemis-4.0/diana/sequence/MarkerRangeVector.java Xartemis-4.0/diana/sequence/NoSequenceException.java Xartemis-4.0/diana/sequence/SequenceChangeEvent.java Xartemis-4.0/diana/sequence/SequenceChangeListener.java Xartemis-4.0/diana/sequence/Strand.java Xartemis-4.0/diana/sequence/NoSequenceException.class Xartemis-4.0/diana/sequence/SequenceChangeListener.class Xartemis-4.0/diana/sequence/Bases.class Xartemis-4.0/diana/sequence/MarkerRange.class Xartemis-4.0/diana/sequence/Marker.class Xartemis-4.0/diana/sequence/MarkerInternal.class Xartemis-4.0/diana/sequence/MarkerChangeListener.class Xartemis-4.0/diana/sequence/Strand.class Xartemis-4.0/diana/sequence/SequenceChangeEvent.class Xartemis-4.0/diana/sequence/AminoAcidSequence.class Xartemis-4.0/diana/sequence/BasePattern.class Xartemis-4.0/diana/sequence/BasePatternFormatException.class Xartemis-4.0/diana/sequence/MarkerRangeVector.class Xartemis-4.0/diana/sequence/MarkerChangeEvent.class Xartemis-4.0/diana/Logger.class Xartemis-4.0/diana/Options.class Xartemis-4.0/diana/EntryGroupChangeListener.class Xartemis-4.0/diana/EntryChangeListener.class Xartemis-4.0/diana/ChangeListener.class Xartemis-4.0/diana/Entry.class Xartemis-4.0/diana/Entry$FeatureEnumerator.class Xartemis-4.0/diana/FeatureChangeListener.class Xartemis-4.0/diana/Selectable.class Xartemis-4.0/diana/FeatureEnumeration.class Xartemis-4.0/diana/Selection.class Xartemis-4.0/diana/EntryGroup.class Xartemis-4.0/diana/SimpleEntryGroup.class Xartemis-4.0/diana/SimpleEntryGroup$FeatureEnumerator.class Xartemis-4.0/diana/EntryVector.class Xartemis-4.0/diana/EntrySourceVector.class Xartemis-4.0/diana/EntrySource.class Xartemis-4.0/diana/ExternalProgramVector.class Xartemis-4.0/diana/ExternalSearchProgram.class Xartemis-4.0/diana/ExternalProgram.class Xartemis-4.0/diana/ExternalProgramException.class Xartemis-4.0/diana/ExternalApplication.class Xartemis-4.0/diana/GotoEventSource.class Xartemis-4.0/diana/SelectionChangeListener.class Xartemis-4.0/diana/GotoListener.class Xartemis-4.0/diana/SimpleGotoEventSource.class Xartemis-4.0/diana/GotoEvent.class Xartemis-4.0/diana/EntryGroupChangeEvent.class Xartemis-4.0/diana/ChangeEvent.class Xartemis-4.0/diana/EntryChangeEvent.class Xartemis-4.0/diana/FeatureVector.class Xartemis-4.0/diana/FeaturePredicate.class Xartemis-4.0/diana/Feature.class Xartemis-4.0/diana/LastSegmentException.class Xartemis-4.0/diana/FilteredEntryGroup.class Xartemis-4.0/diana/FilteredEntryGroup$1.class Xartemis-4.0/diana/FilteredEntryGroup$2.class Xartemis-4.0/diana/FilteredEntryGroup$3.class Xartemis-4.0/diana/FilteredEntryGroup$FeatureEnumerator.class Xartemis-4.0/diana/FeatureSegment.class Xartemis-4.0/diana/FeatureKeyQualifierPredicate.class Xartemis-4.0/diana/FeatureChangeEvent.class Xartemis-4.0/diana/FeatureKeyPredicate.class Xartemis-4.0/diana/FeatureFromVectorPredicate.class Xartemis-4.0/diana/FeatureSegmentVector.class Xartemis-4.0/diana/SelectionChangeEvent.class Xartemis-4.0/docs/CVS/Root Xartemis-4.0/docs/CVS/Repository Xartemis-4.0/docs/CVS/Entries Xartemis-4.0/docs/.cvsignore Xartemis-4.0/docs/Makefile Xartemis-4.0/docs/acknowledgements.sgml Xartemis-4.0/docs/act_display_menus.sgml Xartemis-4.0/docs/act_file_menu.sgml Xartemis-4.0/docs/act_intro_chapter.sgml Xartemis-4.0/docs/act_main_window.sgml Xartemis-4.0/docs/act_main_window_1.gif Xartemis-4.0/docs/act_main_window_2.gif Xartemis-4.0/docs/act_main_window_3.gif Xartemis-4.0/docs/act_main_window_4.gif Xartemis-4.0/docs/act_main_window_5.gif Xartemis-4.0/docs/act_manual.sgml Xartemis-4.0/docs/act_start_chapter.sgml Xartemis-4.0/docs/act_user_manual_screen_shot.gif Xartemis-4.0/docs/artemis.dsl Xartemis-4.0/docs/concepts.sgml Xartemis-4.0/docs/copyright.sgml Xartemis-4.0/docs/display_common.sgml Xartemis-4.0/docs/display_menu.sgml Xartemis-4.0/docs/feature_list.sgml Xartemis-4.0/docs/file_menu.sgml Xartemis-4.0/docs/getting_java.sgml Xartemis-4.0/docs/intro_chapter.sgml Xartemis-4.0/docs/main_window_1.gif Xartemis-4.0/docs/main_window_2.gif Xartemis-4.0/docs/main_window_3.gif Xartemis-4.0/docs/main_window_4.gif Xartemis-4.0/docs/main_window_5.gif Xartemis-4.0/docs/main_window_6.gif Xartemis-4.0/docs/main_window_chapter.sgml Xartemis-4.0/docs/manual.sgml Xartemis-4.0/docs/menus.sgml Xartemis-4.0/docs/mousebuttons.sgml Xartemis-4.0/docs/options.sgml Xartemis-4.0/docs/requirements.sgml Xartemis-4.0/docs/run_menu.sgml Xartemis-4.0/docs/start_chapter.sgml Xartemis-4.0/docs/unix_args.sgml Xartemis-4.0/docs/user_manual_screen_shot.gif Xartemis-4.0/docs/views_popup.sgml Xartemis-4.0/docs/views_scale.sgml Xartemis-4.0/docs/views_scrolling.sgml Xartemis-4.0/docs/views_selection.sgml Xartemis-4.0/embl/CVS/Root Xartemis-4.0/embl/CVS/Repository Xartemis-4.0/embl/CVS/Entries Xartemis-4.0/embl/.cvsignore Xartemis-4.0/etc/CVS/Root Xartemis-4.0/etc/CVS/Repository Xartemis-4.0/etc/CVS/Entries Xartemis-4.0/etc/c1215.embl Xartemis-4.0/etc/changes.shtml Xartemis-4.0/etc/feature_keys Xartemis-4.0/etc/options Xartemis-4.0/etc/pombe.usage Xartemis-4.0/etc/qualifier_types Xartemis-4.0/lib/CVS/Root Xartemis-4.0/lib/CVS/Repository Xartemis-4.0/lib/CVS/Entries Xartemis-4.0/lib/JacORB.jar Xartemis-4.0/uk/CVS/Root Xartemis-4.0/uk/CVS/Repository Xartemis-4.0/uk/CVS/Entries Xartemis-4.0/uk/ac/CVS/Root Xartemis-4.0/uk/ac/CVS/Repository Xartemis-4.0/uk/ac/CVS/Entries Xartemis-4.0/uk/ac/sanger/CVS/Root Xartemis-4.0/uk/ac/sanger/CVS/Repository Xartemis-4.0/uk/ac/sanger/CVS/Entries Xartemis-4.0/uk/ac/sanger/pathogens/CVS/Root Xartemis-4.0/uk/ac/sanger/pathogens/CVS/Repository Xartemis-4.0/uk/ac/sanger/pathogens/CVS/Entries Xartemis-4.0/uk/ac/sanger/pathogens/Document.java Xartemis-4.0/uk/ac/sanger/pathogens/FastVector.java Xartemis-4.0/uk/ac/sanger/pathogens/FileDocument.java Xartemis-4.0/uk/ac/sanger/pathogens/FileProgressDocument.java Xartemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java Xartemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java Xartemis-4.0/uk/ac/sanger/pathogens/OutOfRangeException.java Xartemis-4.0/uk/ac/sanger/pathogens/ProgressInputStream.java Xartemis-4.0/uk/ac/sanger/pathogens/ReadOnlyException.java Xartemis-4.0/uk/ac/sanger/pathogens/StringVector.java Xartemis-4.0/uk/ac/sanger/pathogens/URLDocument.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/CVS/Root Xartemis-4.0/uk/ac/sanger/pathogens/embl/CVS/Repository Xartemis-4.0/uk/ac/sanger/pathogens/embl/CVS/Entries Xartemis-4.0/uk/ac/sanger/pathogens/embl/BetweenRange.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EMBLObject.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Entry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblMisc.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformation.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Feature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Key.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTable.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTree.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFMisc.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/KeyVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LineGroup.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Location.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationLexer.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Qualifier.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/LowerInteger.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/PushBackException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Range.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/RangeVector.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/Sequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeature.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequence.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/UpperInteger.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java Xartemis-4.0/uk/ac/sanger/pathogens/embl/embl.example Xartemis-4.0/uk/ac/sanger/pathogens/embl/Key.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/KeyVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformation.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfo.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EntryInformationException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/Entry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/ReadFormatException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/Qualifier.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/ComparableFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LineGroup.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/Feature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EMBLObject.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierParseException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/Range.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry$1.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/RangeVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/Location.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationLexer.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationLexer$TokenEnumeration.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/QualifierVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/Sequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamQualifier.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/OutOfDateException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/PushBackException.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/DateStampFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FuzzyRange.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureHeader.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/EmblMisc.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankMisc.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFMisc.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNode.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LineGroupVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTable.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LowerInteger.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/UpperInteger.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/BetweenRange.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/CorbaEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry$1.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/NucFeatureHasher.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTree.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureTree$FeatureEnumerator.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/FeatureComparator.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/CorbaSequence.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/CorbaFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.class Xartemis-4.0/uk/ac/sanger/pathogens/OutOfRangeException.class Xartemis-4.0/uk/ac/sanger/pathogens/ReadOnlyException.class Xartemis-4.0/uk/ac/sanger/pathogens/StringVector.class Xartemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressListener.class Xartemis-4.0/uk/ac/sanger/pathogens/StringVector$1.class Xartemis-4.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.class Xartemis-4.0/uk/ac/sanger/pathogens/Document.class Xartemis-4.0/uk/ac/sanger/pathogens/FileDocument.class Xartemis-4.0/uk/ac/sanger/pathogens/FastVector.class Xartemis-4.0/uk/ac/sanger/pathogens/FileProgressDocument.class Xartemis-4.0/uk/ac/sanger/pathogens/ProgressInputStream.class Xartemis-4.0/type/stringListHolder.java Xartemis-4.0/type/stringListHelper.java Xartemis-4.0/type/longListHolder.java Xartemis-4.0/type/longListHelper.java Xartemis-4.0/type/ulongListHolder.java Xartemis-4.0/type/ulongListHelper.java Xartemis-4.0/type/NoResult.java Xartemis-4.0/type/NoResultHolder.java Xartemis-4.0/type/NoResultHelper.java Xartemis-4.0/type/NoWritePermission.java Xartemis-4.0/type/NoWritePermissionHolder.java Xartemis-4.0/type/NoWritePermissionHelper.java Xartemis-4.0/type/InvalidRelation.java Xartemis-4.0/type/InvalidRelationHolder.java Xartemis-4.0/type/InvalidRelationHelper.java Xartemis-4.0/type/IndexOutOfRange.java Xartemis-4.0/type/IndexOutOfRangeHolder.java Xartemis-4.0/type/IndexOutOfRangeHelper.java Xartemis-4.0/type/InvalidArgumentValue.java Xartemis-4.0/type/InvalidArgumentValueHolder.java Xartemis-4.0/type/InvalidArgumentValueHelper.java Xartemis-4.0/type/ParseError.java Xartemis-4.0/type/ParseErrorHolder.java Xartemis-4.0/type/ParseErrorHelper.java Xartemis-4.0/type/Date.java Xartemis-4.0/type/DateHolder.java Xartemis-4.0/type/DateHelper.java Xartemis-4.0/type/DateListHolder.java Xartemis-4.0/type/DateListHelper.java Xartemis-4.0/type/Person.java Xartemis-4.0/type/PersonHolder.java Xartemis-4.0/type/PersonHelper.java Xartemis-4.0/type/PersonListHolder.java Xartemis-4.0/type/PersonListHelper.java Xartemis-4.0/type/Revision.java Xartemis-4.0/type/RevisionHolder.java Xartemis-4.0/type/RevisionHelper.java Xartemis-4.0/type/RevisionListHolder.java Xartemis-4.0/type/RevisionListHelper.java Xartemis-4.0/type/DbXref.java Xartemis-4.0/type/DbXrefHolder.java Xartemis-4.0/type/DbXrefHelper.java Xartemis-4.0/type/DbXrefListHolder.java Xartemis-4.0/type/DbXrefListHelper.java Xartemis-4.0/type/AminoAcid.java Xartemis-4.0/type/AminoAcidHolder.java Xartemis-4.0/type/AminoAcidHelper.java Xartemis-4.0/type/AminoAcidListHolder.java Xartemis-4.0/type/AminoAcidListHelper.java Xartemis-4.0/type/CodonTranslation.java Xartemis-4.0/type/CodonTranslationHolder.java Xartemis-4.0/type/CodonTranslationHelper.java Xartemis-4.0/type/CodonTranslationListHolder.java Xartemis-4.0/type/CodonTranslationListHelper.java Xartemis-4.0/type/AntiCodon.java Xartemis-4.0/type/AntiCodonHolder.java Xartemis-4.0/type/AntiCodonHelper.java Xartemis-4.0/type/AntiCodonListHolder.java Xartemis-4.0/type/AntiCodonListHelper.java Xartemis-4.0/type/TranslationException.java Xartemis-4.0/type/TranslationExceptionHolder.java Xartemis-4.0/type/TranslationExceptionHelper.java Xartemis-4.0/type/RepeatUnit.java Xartemis-4.0/type/Exact_ftc.java Xartemis-4.0/type/TranslationExceptionListHolder.java Xartemis-4.0/type/TranslationExceptionListHelper.java Xartemis-4.0/type/SpliceConsensus.java Xartemis-4.0/type/SpliceConsensusHolder.java Xartemis-4.0/type/SpliceConsensusHelper.java Xartemis-4.0/type/SpliceConsensusListHolder.java Xartemis-4.0/type/SpliceConsensusListHelper.java Xartemis-4.0/type/RepeatUnitHolder.java Xartemis-4.0/type/RepeatUnitHelper.java Xartemis-4.0/type/RepeatUnitListHolder.java Xartemis-4.0/type/RepeatUnitListHelper.java Xartemis-4.0/type/FuzzyTypeCodeHelper.java Xartemis-4.0/type/In_ftc.java Xartemis-4.0/type/Between_ftc.java Xartemis-4.0/type/Less_ftc.java Xartemis-4.0/type/Greater_ftc.java Xartemis-4.0/type/Fuzzy.java Xartemis-4.0/type/FuzzyHolder.java Xartemis-4.0/type/FuzzyHelper.java Xartemis-4.0/type/FuzzyListHolder.java Xartemis-4.0/type/FuzzyListHelper.java Xartemis-4.0/type/NoResult.class Xartemis-4.0/type/InvalidRelation.class Xartemis-4.0/type/InvalidArgumentValue.class Xartemis-4.0/type/IndexOutOfRange.class Xartemis-4.0/type/DbXref.class Xartemis-4.0/type/Revision.class Xartemis-4.0/type/InvalidRelationHelper.class Xartemis-4.0/type/InvalidArgumentValueHelper.class Xartemis-4.0/type/IndexOutOfRangeHelper.class Xartemis-4.0/type/Date.class Xartemis-4.0/type/stringListHelper.class Xartemis-4.0/type/NoResultHelper.class Xartemis-4.0/type/TranslationException.class Xartemis-4.0/type/CodonTranslation.class Xartemis-4.0/type/AntiCodon.class Xartemis-4.0/type/SpliceConsensus.class Xartemis-4.0/type/RepeatUnit.class Xartemis-4.0/type/Fuzzy.class Xartemis-4.0/type/AminoAcid.class Xartemis-4.0/type/DbXrefListHelper.class Xartemis-4.0/type/RevisionListHelper.class Xartemis-4.0/type/DbXrefHelper.class Xartemis-4.0/type/RevisionHelper.class Xartemis-4.0/type/DateHelper.class Xartemis-4.0/type/RepeatUnitHelper.class Xartemis-4.0/type/SpliceConsensusHelper.class Xartemis-4.0/type/AntiCodonHelper.class Xartemis-4.0/type/CodonTranslationHelper.class Xartemis-4.0/type/AminoAcidHelper.class Xartemis-4.0/type/TranslationExceptionHelper.class Xartemis-4.0/type/FuzzyHelper.class Xartemis-4.0/nsdb/NucSeqListHolder.java Xartemis-4.0/nsdb/NucSeqListHelper.java Xartemis-4.0/nsdb/NucFeatureListHolder.java Xartemis-4.0/nsdb/NucFeatureListHelper.java Xartemis-4.0/nsdb/LocationListHolder.java Xartemis-4.0/nsdb/LocationListHelper.java Xartemis-4.0/nsdb/FeatureLocationListHolder.java Xartemis-4.0/nsdb/FeatureLocationListHelper.java Xartemis-4.0/nsdb/EntryInfoListHolder.java Xartemis-4.0/nsdb/EntryInfoListHelper.java Xartemis-4.0/nsdb/InexactLocation.java Xartemis-4.0/nsdb/InexactLocationHolder.java Xartemis-4.0/nsdb/InexactLocationHelper.java Xartemis-4.0/nsdb/EntryInfo.java Xartemis-4.0/nsdb/EntryInfoOperations.java Xartemis-4.0/nsdb/EntryInfoHelper.java Xartemis-4.0/nsdb/EntryInfoHolder.java Xartemis-4.0/nsdb/_EntryInfoStub.java Xartemis-4.0/nsdb/EntryInfoPOA.java Xartemis-4.0/nsdb/EntryInfoPOATie.java Xartemis-4.0/nsdb/Location.java Xartemis-4.0/nsdb/LocationOperations.java Xartemis-4.0/nsdb/LocationHelper.java Xartemis-4.0/nsdb/LocationHolder.java Xartemis-4.0/nsdb/_LocationStub.java Xartemis-4.0/nsdb/LocationPOA.java Xartemis-4.0/nsdb/LocationPOATie.java Xartemis-4.0/nsdb/LocationPackage/IdListHolder.java Xartemis-4.0/nsdb/LocationPackage/IdListHelper.java Xartemis-4.0/nsdb/LocationPackage/LocNodeTypeCodeHelper.java Xartemis-4.0/nsdb/LocationPackage/LocVirtualSegment.java Xartemis-4.0/nsdb/LocationPackage/LocVirtualSegmentHolder.java Xartemis-4.0/nsdb/LocationPackage/LocVirtualSegmentHelper.java Xartemis-4.0/nsdb/LocationPackage/LocGapHolder.java Xartemis-4.0/nsdb/LocationPackage/LocGapHelper.java Xartemis-4.0/nsdb/LocationPackage/LocPhysicalSegmentHolder.java Xartemis-4.0/nsdb/LocationPackage/LocPhysicalSegmentHelper.java Xartemis-4.0/nsdb/LocationPackage/LocOperator.java Xartemis-4.0/nsdb/LocationPackage/LocOperatorHolder.java Xartemis-4.0/nsdb/LocationPackage/LocOperatorHelper.java Xartemis-4.0/nsdb/LocationPackage/LocationNode_u.java Xartemis-4.0/nsdb/LocationPackage/LocOperator.class Xartemis-4.0/nsdb/LocationPackage/LocationNode_uHolder.java Xartemis-4.0/nsdb/LocationPackage/LocationNode_uHelper.java Xartemis-4.0/nsdb/LocationPackage/LocationNodeListHolder.java Xartemis-4.0/nsdb/LocationPackage/LocationNodeListHelper.java Xartemis-4.0/nsdb/LocationPackage/LocationNode_u.class Xartemis-4.0/nsdb/LocationPackage/LocVirtualSegment.class Xartemis-4.0/nsdb/LocationPackage/LocationNodeListHelper.class Xartemis-4.0/nsdb/LocationPackage/LocationNode_uHelper.class Xartemis-4.0/nsdb/LocationPackage/LocOperatorHelper.class Xartemis-4.0/nsdb/LocationPackage/LocGapHelper.class Xartemis-4.0/nsdb/LocationPackage/LocPhysicalSegmentHelper.class Xartemis-4.0/nsdb/LocationPackage/LocVirtualSegmentHelper.class Xartemis-4.0/nsdb/LocationPackage/IdListHelper.class Xartemis-4.0/nsdb/FeatureLocation.java Xartemis-4.0/nsdb/FeatureLocationOperations.java Xartemis-4.0/nsdb/FeatureLocationPOA.java Xartemis-4.0/nsdb/FeatureLocationHelper.java Xartemis-4.0/nsdb/FeatureLocationHolder.java Xartemis-4.0/nsdb/_FeatureLocationStub.java Xartemis-4.0/nsdb/FeatureLocationPOATie.java Xartemis-4.0/nsdb/NucFeature.java Xartemis-4.0/nsdb/NucFeaturePOA.java Xartemis-4.0/nsdb/NucFeatureOperations.java Xartemis-4.0/nsdb/NucFeatureHelper.java Xartemis-4.0/nsdb/NucFeatureHolder.java Xartemis-4.0/nsdb/_NucFeatureStub.java Xartemis-4.0/nsdb/NucFeaturePOATie.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierTypeCodeHelper.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValue_u.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValue_uHolder.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValue_uHelper.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValueListHolder.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValueListHelper.java Xartemis-4.0/nsdb/NucFeaturePackage/Qualifier.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierHolder.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierHelper.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierListHolder.java Xartemis-4.0/nsdb/NucFeaturePackage/QualifierListHelper.java Xartemis-4.0/nsdb/NucFeaturePackage/Qualifier.class Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValue_u.class Xartemis-4.0/nsdb/NucFeaturePackage/QualifierListHelper.class Xartemis-4.0/nsdb/NucFeaturePackage/QualifierHelper.class Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValue_uHelper.class Xartemis-4.0/nsdb/NucFeaturePackage/QualifierValueListHelper.class Xartemis-4.0/nsdb/NucSeq.java Xartemis-4.0/nsdb/NucSeqOperations.java Xartemis-4.0/nsdb/NucSeqHelper.java Xartemis-4.0/nsdb/NucSeqHolder.java Xartemis-4.0/nsdb/_NucSeqStub.java Xartemis-4.0/nsdb/NucSeqPOA.java Xartemis-4.0/nsdb/NucSeqPOATie.java Xartemis-4.0/nsdb/Embl.java Xartemis-4.0/nsdb/EmblSeq.java Xartemis-4.0/nsdb/EmblSeqOperations.java Xartemis-4.0/nsdb/EmblSeqHelper.java Xartemis-4.0/nsdb/EmblSeqHolder.java Xartemis-4.0/nsdb/_EmblSeqStub.java Xartemis-4.0/nsdb/EmblSeqPOA.java Xartemis-4.0/nsdb/EmblSeqPOATie.java Xartemis-4.0/nsdb/EmblOperations.java Xartemis-4.0/nsdb/EmblHelper.java Xartemis-4.0/nsdb/EmblHolder.java Xartemis-4.0/nsdb/_EmblStub.java Xartemis-4.0/nsdb/EmblPOA.java Xartemis-4.0/nsdb/EmblPOATie.java Xartemis-4.0/nsdb/EmblPackage/Superceded.java Xartemis-4.0/nsdb/EmblPackage/SupercededHolder.java Xartemis-4.0/nsdb/EmblPackage/SupercededHelper.java Xartemis-4.0/nsdb/EmblPackage/Superceded.class Xartemis-4.0/nsdb/EmblPackage/SupercededHelper.class Xartemis-4.0/nsdb/OutOfDate.java Xartemis-4.0/nsdb/LocationParse.java Xartemis-4.0/nsdb/OutOfDateHolder.java Xartemis-4.0/nsdb/OutOfDateHelper.java Xartemis-4.0/nsdb/ReadOnlyException.java Xartemis-4.0/nsdb/ReadOnlyExceptionHolder.java Xartemis-4.0/nsdb/ReadOnlyExceptionHelper.java Xartemis-4.0/nsdb/LocationParseHolder.java Xartemis-4.0/nsdb/LocationParseHelper.java Xartemis-4.0/nsdb/QualifierParse.java Xartemis-4.0/nsdb/QualifierParseHolder.java Xartemis-4.0/nsdb/QualifierParseHelper.java Xartemis-4.0/nsdb/InvalidQualifier.java Xartemis-4.0/nsdb/InvalidQualifierHolder.java Xartemis-4.0/nsdb/InvalidQualifierHelper.java Xartemis-4.0/nsdb/NucFeatureWriterListHolder.java Xartemis-4.0/nsdb/NucFeatureWriterListHelper.java Xartemis-4.0/nsdb/datestamp_tHelper.java Xartemis-4.0/nsdb/Datestamp.java Xartemis-4.0/nsdb/DatestampHolder.java Xartemis-4.0/nsdb/DatestampHelper.java Xartemis-4.0/nsdb/EntryStats.java Xartemis-4.0/nsdb/EntryStatsHolder.java Xartemis-4.0/nsdb/EntryStatsHelper.java Xartemis-4.0/nsdb/ServerInfo.java Xartemis-4.0/nsdb/EmblWriter.java Xartemis-4.0/nsdb/ServerInfoHolder.java Xartemis-4.0/nsdb/ServerInfoHelper.java Xartemis-4.0/nsdb/EmblWriterOperations.java Xartemis-4.0/nsdb/EmblWriterHelper.java Xartemis-4.0/nsdb/EmblWriterHolder.java Xartemis-4.0/nsdb/_EmblWriterStub.java Xartemis-4.0/nsdb/EmblWriterPOA.java Xartemis-4.0/nsdb/EmblWriterPOATie.java Xartemis-4.0/nsdb/InvalidKey.java Xartemis-4.0/nsdb/InvalidKeyHolder.java Xartemis-4.0/nsdb/InvalidKeyHelper.java Xartemis-4.0/nsdb/CommitFailed.java Xartemis-4.0/nsdb/CommitFailedHolder.java Xartemis-4.0/nsdb/CommitFailedHelper.java Xartemis-4.0/nsdb/EmblSeqWriter.java Xartemis-4.0/nsdb/EmblSeqWriterOperations.java Xartemis-4.0/nsdb/EmblSeqWriterHelper.java Xartemis-4.0/nsdb/EmblSeqWriterHolder.java Xartemis-4.0/nsdb/_EmblSeqWriterStub.java Xartemis-4.0/nsdb/EmblSeqWriterPOA.java Xartemis-4.0/nsdb/EmblSeqWriterPOATie.java Xartemis-4.0/nsdb/NucFeatureWriter.java Xartemis-4.0/nsdb/NucFeatureWriterOperations.java Xartemis-4.0/nsdb/Embl.class Xartemis-4.0/nsdb/NucFeatureWriterHelper.java Xartemis-4.0/nsdb/NucFeatureWriterHolder.java Xartemis-4.0/nsdb/_NucFeatureWriterStub.java Xartemis-4.0/nsdb/NucFeatureWriterPOA.java Xartemis-4.0/nsdb/NucFeatureWriterPOATie.java Xartemis-4.0/nsdb/EmblSeq.class Xartemis-4.0/nsdb/EmblSeqOperations.class Xartemis-4.0/nsdb/NucSeq.class Xartemis-4.0/nsdb/EntryInfo.class Xartemis-4.0/nsdb/NucSeqOperations.class Xartemis-4.0/nsdb/EntryInfoOperations.class Xartemis-4.0/nsdb/InexactLocation.class Xartemis-4.0/nsdb/ServerInfo.class Xartemis-4.0/nsdb/EntryStats.class Xartemis-4.0/nsdb/EmblOperations.class Xartemis-4.0/nsdb/EmblWriter.class Xartemis-4.0/nsdb/EmblWriterOperations.class Xartemis-4.0/nsdb/EmblWriterHelper.class Xartemis-4.0/nsdb/NucFeature.class Xartemis-4.0/nsdb/NucFeatureOperations.class Xartemis-4.0/nsdb/EmblSeqWriter.class Xartemis-4.0/nsdb/EmblSeqWriterOperations.class Xartemis-4.0/nsdb/LocationParse.class Xartemis-4.0/nsdb/InvalidKey.class Xartemis-4.0/nsdb/ReadOnlyException.class Xartemis-4.0/nsdb/CommitFailed.class Xartemis-4.0/nsdb/NucFeatureWriter.class Xartemis-4.0/nsdb/NucFeatureWriterOperations.class Xartemis-4.0/nsdb/QualifierParse.class Xartemis-4.0/nsdb/InvalidQualifier.class Xartemis-4.0/nsdb/OutOfDate.class Xartemis-4.0/nsdb/EmblHelper.class Xartemis-4.0/nsdb/Location.class Xartemis-4.0/nsdb/LocationOperations.class Xartemis-4.0/nsdb/InexactLocationHelper.class Xartemis-4.0/nsdb/_EmblWriterStub.class Xartemis-4.0/nsdb/FeatureLocation.class Xartemis-4.0/nsdb/FeatureLocationOperations.class Xartemis-4.0/nsdb/Datestamp.class Xartemis-4.0/nsdb/_EmblStub.class Xartemis-4.0/nsdb/LocationParseHelper.class Xartemis-4.0/nsdb/CommitFailedHelper.class Xartemis-4.0/nsdb/EmblSeqWriterHelper.class Xartemis-4.0/nsdb/NucFeatureWriterHelper.class Xartemis-4.0/nsdb/QualifierParseHelper.class Xartemis-4.0/nsdb/ServerInfoHelper.class Xartemis-4.0/nsdb/EmblSeqHelper.class Xartemis-4.0/nsdb/_EmblSeqWriterStub.class Xartemis-4.0/nsdb/_NucFeatureWriterStub.class Xartemis-4.0/nsdb/EntryStatsHelper.class Xartemis-4.0/nsdb/_EmblSeqStub.class Xartemis-4.0/nsdb/NucFeatureListHelper.class Xartemis-4.0/nsdb/DatestampHelper.class Xartemis-4.0/nsdb/NucFeatureHelper.class Xartemis-4.0/nsdb/ReadOnlyExceptionHelper.class Xartemis-4.0/nsdb/LocationHelper.class Xartemis-4.0/nsdb/InvalidKeyHelper.class Xartemis-4.0/nsdb/InvalidQualifierHelper.class Xartemis-4.0/nsdb/OutOfDateHelper.class Xartemis-4.0/nsdb/FeatureLocationHelper.class Xartemis-4.0/nsdb/_NucFeatureStub.class Xartemis-4.0/nsdb/_LocationStub.class Xartemis-4.0/nsdb/_FeatureLocationStub.class Xartemis-4.0/seqdb/BioSeq.java Xartemis-4.0/seqdb/BioSeqOperations.java Xartemis-4.0/seqdb/BioSeqHelper.java Xartemis-4.0/seqdb/BioSeqHolder.java Xartemis-4.0/seqdb/_BioSeqStub.java Xartemis-4.0/seqdb/BioSeqPOA.java Xartemis-4.0/seqdb/BioSeqPOATie.java Xartemis-4.0/seqdb/Feature.java Xartemis-4.0/seqdb/FeatureOperations.java Xartemis-4.0/seqdb/FeatureHelper.java Xartemis-4.0/seqdb/FeatureHolder.java Xartemis-4.0/seqdb/_FeatureStub.java Xartemis-4.0/seqdb/FeaturePOA.java Xartemis-4.0/seqdb/FeaturePOATie.java Xartemis-4.0/seqdb/SeqInfo.java Xartemis-4.0/seqdb/SeqInfoOperations.java Xartemis-4.0/seqdb/SeqInfoHelper.java Xartemis-4.0/seqdb/SeqInfoPOA.java Xartemis-4.0/seqdb/SeqInfoHolder.java Xartemis-4.0/seqdb/_SeqInfoStub.java Xartemis-4.0/seqdb/SeqInfoPOATie.java Xartemis-4.0/seqdb/SeqInfo.class Xartemis-4.0/seqdb/SeqInfoOperations.class Xartemis-4.0/seqdb/BioSeqOperations.class Xartemis-4.0/seqdb/BioSeq.class Xartemis-4.0/seqdb/Feature.class Xartemis-4.0/seqdb/FeatureOperations.class Xartemis-4.0/Ensembl/artemis/RequestedSequenceTooLong.java Xartemis-4.0/Ensembl/artemis/RequestedSequenceTooLongHolder.java Xartemis-4.0/Ensembl/artemis/RequestedSequenceTooLongHelper.java Xartemis-4.0/Ensembl/artemis/NoEntry.java Xartemis-4.0/Ensembl/artemis/NoEntryHolder.java Xartemis-4.0/Ensembl/artemis/NoEntryHelper.java Xartemis-4.0/Ensembl/artemis/BioSequence.java Xartemis-4.0/Ensembl/artemis/BioSequenceOperations.java Xartemis-4.0/Ensembl/artemis/BioSequenceHelper.java Xartemis-4.0/Ensembl/artemis/BioSequenceHolder.java Xartemis-4.0/Ensembl/artemis/_BioSequenceStub.java Xartemis-4.0/Ensembl/artemis/BioSequencePOA.java Xartemis-4.0/Ensembl/artemis/BioSequencePOATie.java Xartemis-4.0/Ensembl/artemis/Qualifier.java Xartemis-4.0/Ensembl/artemis/QualifierHolder.java Xartemis-4.0/Ensembl/artemis/QualifierHelper.java Xartemis-4.0/Ensembl/artemis/QualifierListHolder.java Xartemis-4.0/Ensembl/artemis/QualifierListHelper.java Xartemis-4.0/Ensembl/artemis/Feature.java Xartemis-4.0/Ensembl/artemis/FeatureOperations.java Xartemis-4.0/Ensembl/artemis/FeatureHelper.java Xartemis-4.0/Ensembl/artemis/FeatureHolder.java Xartemis-4.0/Ensembl/artemis/_FeatureStub.java Xartemis-4.0/Ensembl/artemis/FeaturePOA.java Xartemis-4.0/Ensembl/artemis/DB.java Xartemis-4.0/Ensembl/artemis/FeaturePOATie.java Xartemis-4.0/Ensembl/artemis/FeatureListHolder.java Xartemis-4.0/Ensembl/artemis/FeatureListHelper.java Xartemis-4.0/Ensembl/artemis/Entry.java Xartemis-4.0/Ensembl/artemis/EntryOperations.java Xartemis-4.0/Ensembl/artemis/EntryHelper.java Xartemis-4.0/Ensembl/artemis/EntryHolder.java Xartemis-4.0/Ensembl/artemis/_EntryStub.java Xartemis-4.0/Ensembl/artemis/EntryPOA.java Xartemis-4.0/Ensembl/artemis/EntryPOATie.java Xartemis-4.0/Ensembl/artemis/QualifierDefinitionListHolder.java Xartemis-4.0/Ensembl/artemis/QualifierDefinitionListHelper.java Xartemis-4.0/Ensembl/artemis/FeatureDefinition.java Xartemis-4.0/Ensembl/artemis/FeatureDefinitionHolder.java Xartemis-4.0/Ensembl/artemis/FeatureDefinitionHelper.java Xartemis-4.0/Ensembl/artemis/FeatureDefinitionListHolder.java Xartemis-4.0/Ensembl/artemis/FeatureDefinitionListHelper.java Xartemis-4.0/Ensembl/artemis/EntryNameListHolder.java Xartemis-4.0/Ensembl/artemis/EntryNameListHelper.java Xartemis-4.0/Ensembl/artemis/DBOperations.java Xartemis-4.0/Ensembl/artemis/DBHelper.java Xartemis-4.0/Ensembl/artemis/DBHolder.java Xartemis-4.0/Ensembl/artemis/_DBStub.java Xartemis-4.0/Ensembl/artemis/DBPOA.java Xartemis-4.0/Ensembl/artemis/DBPOATie.java Xartemis-4.0/Diana.class Xartemis-4.0/AppGlobal.class Xbin/art X@dirrm artemis-4.0/META-INF/CVS X@dirrm artemis-4.0/META-INF X@dirrm artemis-4.0/collections/CVS X@dirrm artemis-4.0/collections X@dirrm artemis-4.0/corba/CVS X@dirrm artemis-4.0/corba X@dirrm artemis-4.0/diana/CVS X@dirrm artemis-4.0/diana/plot/CVS X@dirrm artemis-4.0/diana/plot X@dirrm artemis-4.0/diana/components/CVS X@dirrm artemis-4.0/diana/components X@dirrm artemis-4.0/diana/sequence/CVS X@dirrm artemis-4.0/diana/sequence X@dirrm artemis-4.0/diana X@dirrm artemis-4.0/docs/CVS X@dirrm artemis-4.0/docs X@dirrm artemis-4.0/embl/CVS X@dirrm artemis-4.0/embl X@dirrm artemis-4.0/etc/CVS X@dirrm artemis-4.0/etc X@dirrm artemis-4.0/lib/CVS X@dirrm artemis-4.0/lib X@dirrm artemis-4.0/uk/CVS X@dirrm artemis-4.0/uk/ac/sanger/CVS X@dirrm artemis-4.0/uk/ac/sanger/pathogens/CVS X@dirrm artemis-4.0/uk/ac/sanger/pathogens/embl/CVS X@dirrm artemis-4.0/uk/ac/sanger/pathogens/embl X@dirrm artemis-4.0/uk/ac/sanger/pathogens X@dirrm artemis-4.0/uk/ac/CVS X@dirrm artemis-4.0/uk/ac/sanger X@dirrm artemis-4.0/uk/ac X@dirrm artemis-4.0/uk X@dirrm artemis-4.0/type X@dirrm artemis-4.0/nsdb/LocationPackage X@dirrm artemis-4.0/nsdb/NucFeaturePackage X@dirrm artemis-4.0/nsdb/EmblPackage X@dirrm artemis-4.0/nsdb X@dirrm artemis-4.0/seqdb X@dirrm artemis-4.0/Ensembl/artemis X@dirrm artemis-4.0/Ensembl X@dirrm artemis-4.0/CVS X@dirrm artemis-4.0 END-of-artemis/pkg-plist exit >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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