Date: 21 Dec 2006 14:59:05 -0000 From: "Aho K.F.Li" <thinker@branda.to> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/107022: py-num is broken with default installation Message-ID: <20061221145905.25306.qmail@heaven.branda.to> Resent-Message-ID: <200612211530.kBLFUHEe086364@freefall.freebsd.org>
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>Number: 107022
>Category: ports
>Synopsis: py-num is broken with default installation
>Confidential: no
>Severity: serious
>Priority: medium
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: sw-bug
>Submitter-Id: current-users
>Arrival-Date: Thu Dec 21 15:30:16 GMT 2006
>Closed-Date:
>Last-Modified:
>Originator: Aho K.F. Li
>Release: FreeBSD 7.0-CURRENT i386
>Organization:
Thinker
>Environment:
System: FreeBSD cowboy.branda.to 7.0-CURRENT FreeBSD 7.0-CURRENT #0: Sat Nov 4
>Description:
Py-numpy is not work with default installation. It causes by
inconsistent between site.cfg, generated by port, and package
auto-discovery of system_info.py. The inconsistent is happen
when alapack is installed before installing py-numpy.
>How-To-Repeat:
install alapack
install port of py-numpy
run python & import numpy
python yell a run-time error
>Fix:
Copy following file into files/ .
--- patch-numpy-distutils-system_info.py begins here ---
--- numpy/distutils/system_info.py.orig Mon Jul 31 00:08:48 2006
+++ numpy/distutils/system_info.py Sun Dec 17 23:24:50 2006
@@ -855,6 +855,8 @@
atlas_1 = None
for d in lib_dirs:
atlas = self.check_libs2(d,atlas_libs,[])
+ if atlas is not None:
+ atlas['libraries'].extend(['g2c', 'm', 'pthread'])
lapack_atlas = self.check_libs2(d,['lapack_atlas'],[])
if atlas is not None:
lib_dirs2 = [d] + self.combine_paths(d,['atlas*','ATLAS*'])
@@ -1183,8 +1185,9 @@
atlas_version = None
need_lapack = 0
need_blas = 0
+ lapack_type = self.cp.get(self.section, 'lapack_type').strip()
info = {}
- if atlas_info:
+ if lapack_type == 'atlas' and atlas_info:
version_info = atlas_info.copy()
atlas_version = get_atlas_version(**version_info)
if not atlas_info.has_key('define_macros'):
--- patch-numpy-distutils-system_info.py ends here ---
--- patch-site.cfg begins here ---
--- site.cfg.orig Wed Aug 23 03:01:25 2006
+++ site.cfg Sun Dec 17 23:25:51 2006
@@ -1,3 +1,6 @@
+[DEFAULT]
+lapack_type = blas
+
[atlas]
library_dirs = /usr/lib/atlas/3dnow/
atlas_libs = lapack, blas
--- patch-site.cfg ends here ---
--- site.cfg begins here ---
[DEFAULT]
lapack_type = atlas
[atlas]
library_dirs = /usr/local/lib
atlas_libs = alapack_r, f77blas_r, cblas_r, atlas_r
--- site.cfg ends here ---
>Release-Note:
>Audit-Trail:
>Unformatted:
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