Date: Mon, 11 Jan 2021 17:27:30 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r561234 - head/biology/stacks Message-ID: <202101111727.10BHRUi0050855@repo.freebsd.org>
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Author: jwb Date: Mon Jan 11 17:27:30 2021 New Revision: 561234 URL: https://svnweb.freebsd.org/changeset/ports/561234 Log: biology/stacks: Drop dependency on gcc Replace compiler:openmp with compiler:c++11-lang and localbase Set USE_GCC for i386 to work around limitations in clang atomic (PR 230888) PR: port/247753, ports/252379 Modified: head/biology/stacks/Makefile Modified: head/biology/stacks/Makefile ============================================================================== --- head/biology/stacks/Makefile Mon Jan 11 17:17:35 2021 (r561233) +++ head/biology/stacks/Makefile Mon Jan 11 17:27:30 2021 (r561234) @@ -2,7 +2,7 @@ PORTNAME= stacks DISTVERSION= 2.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology perl5 python MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/ @@ -12,7 +12,7 @@ COMMENT= Software pipeline for building loci from shor LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE -USES= compiler:openmp gmake python shebangfix +USES= compiler:c++11-lang gmake python shebangfix SHEBANG_FILES= scripts/*.pl scripts/*.py \ scripts/stacks-integrate-alignments scripts/stacks-gdb @@ -22,8 +22,8 @@ LDFLAGS+= -lpthread .include <bsd.port.pre.mk> -# Force newer GCC on platforms using GCC 4.2 as base -.if ${CHOSEN_COMPILER_TYPE} == gcc +# Temp workaround, see PR 230888 +.if ${ARCH} == i386 USE_GCC= yes .endif
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