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Subject: Re: ports/118548: commit references a PR
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The following reply was made to PR ports/118548; it has been noted by GNATS.

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/118548: commit references a PR
Date: Sat, 24 May 2008 07:01:59 +0000 (UTC)

 edwin       2008-05-24 07:01:56 UTC
 
   FreeBSD ports repository
 
   Modified files:
     biology              Makefile 
   Added files:
     biology/phd2fasta    Makefile distinfo pkg-descr 
     biology/phd2fasta/files patch-Makefile 
   Log:
   New port: biology/consed viewing and editing workbench for sequence
   assembly
   
           Consed is a tool for viewing, editing, and finishing sequence
           assemblies.
   
           The port is constituted of 4 parts:
           biology/phred: base caller with quality evaluation
           biology/phrap: sequence assembler for shotgun sequencing
           biology/consed: workbench
           biology/phd2fasta: small utility
   
           All these can be used separately; however, most function
           of consed depends on the others.
   
           Although these programs are licensed freely for academic
           and nonprofit purposes, users have to contact the authors
           to get the softwares.
           Phred (including phd2fasta) and phrap are emailed,
           and consed can be downloaded to a restricted IP address.
           For commercial users, the licensing fee is ca. $10,000 at
           the time of writing.
   
   PR:             ports/118548
   Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
   
   Revision  Changes    Path
   1.99      +1 -0      ports/biology/Makefile
   1.1       +48 -0     ports/biology/phd2fasta/Makefile (new)
   1.1       +3 -0      ports/biology/phd2fasta/distinfo (new)
   1.1       +10 -0     ports/biology/phd2fasta/files/patch-Makefile (new)
   1.1       +8 -0      ports/biology/phd2fasta/pkg-descr (new)
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