Date: Fri, 27 Apr 2007 09:33:56 -0500 (CDT) From: Jason Bacon <bacon@smithers.neuro.mcw.edu> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/112183: New port: science/nifticlib NIFTI imaging data format Message-ID: <200704271433.l3REXuHM071587@smithers.neuro.mcw.edu> Resent-Message-ID: <200704271440.l3REe5Le048707@freefall.freebsd.org>
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>Number: 112183 >Category: ports >Synopsis: New port: science/nifticlib NIFTI imaging data format >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Apr 27 14:40:05 GMT 2007 >Closed-Date: >Last-Modified: >Originator: Jason Bacon >Release: FreeBSD 5.4-RELEASE i386 >Organization: Medical College of Wisconsin >Environment: System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon@clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386 >Description: This is a new port for the Neuroimaging Informatics Technology Initiative (NIFTI) data format, which promotes interoperability among various neuroimaging tools such as AFNI, FSL, Caret, Freesurfer, etc. >How-To-Repeat: >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # science/nifticlib # science/nifticlib/pkg-descr # science/nifticlib/Makefile # science/nifticlib/pkg-plist # science/nifticlib/distinfo # science/nifticlib/files # science/nifticlib/files/patch-Makefile # science/nifticlib/files/nifticlib.1 # echo c - science/nifticlib mkdir -p science/nifticlib > /dev/null 2>&1 echo x - science/nifticlib/pkg-descr sed 's/^X//' >science/nifticlib/pkg-descr << 'END-of-science/nifticlib/pkg-descr' XNIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWG Xas a short-term measure to facilitate inter-operation of functional MRI Xdata analysis software packages. X XWWW: http://nifti.nimh.nih.gov/ END-of-science/nifticlib/pkg-descr echo x - science/nifticlib/Makefile sed 's/^X//' >science/nifticlib/Makefile << 'END-of-science/nifticlib/Makefile' X# New ports collection makefile for: nifticlib X# Date created: 2007-04-27 X# Whom: Jason W. Bacon X# X# $FreeBSD$ X# X XPORTNAME= nifticlib XPORTVERSION= 0.4 XCATEGORIES= science graphics XMASTER_SITES= ${MASTER_SITE_SOURCEFORGE} XMASTER_SITE_SUBDIR= niftilib X XMAINTAINER= bacon@smithers.neuro.mcw.edu XCOMMENT= Neuroimaging Infoirmatics Technology Initiative data format X XUSE_GMAKE= yes X XMAN1= nifticlib.1 X Xdo-install: X ${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${PREFIX}/bin X ${INSTALL_DATA} ${WRKSRC}/lib/* ${PREFIX}/lib X ${INSTALL_DATA} ${WRKSRC}/include/* ${PREFIX}/include X ${INSTALL_MAN} ${FILESDIR}/nifticlib.1 ${PREFIX}/man/man1 X X.include <bsd.port.mk> END-of-science/nifticlib/Makefile echo x - science/nifticlib/pkg-plist sed 's/^X//' >science/nifticlib/pkg-plist << 'END-of-science/nifticlib/pkg-plist' Xbin/nifti1_test Xbin/nifti_stats Xbin/nifti_tool Xinclude/config.h Xinclude/dbh.h Xinclude/fslio.h Xinclude/nifti1.h Xinclude/nifti1_io.h Xinclude/znzlib.h Xlib/libfslio.a Xlib/libniftiio.a Xlib/libznz.a END-of-science/nifticlib/pkg-plist echo x - science/nifticlib/distinfo sed 's/^X//' >science/nifticlib/distinfo << 'END-of-science/nifticlib/distinfo' XMD5 (nifticlib-0.4.tar.gz) = d343dd156dcadab07181427d8b6a4eff XSHA256 (nifticlib-0.4.tar.gz) = 0dbab306fa3b07621f54938bd5f32b80a4a9ea2e665e753adc223ba6c3340ed2 XSIZE (nifticlib-0.4.tar.gz) = 223814 END-of-science/nifticlib/distinfo echo c - science/nifticlib/files mkdir -p science/nifticlib/files > /dev/null 2>&1 echo x - science/nifticlib/files/patch-Makefile sed 's/^X//' >science/nifticlib/files/patch-Makefile << 'END-of-science/nifticlib/files/patch-Makefile' X--- Makefile.orig Wed Sep 6 13:12:43 2006 X+++ Makefile Fri Apr 27 09:04:12 2007 X@@ -15,21 +15,21 @@ X X X ## Compiler defines X-cc = gcc X-CC = gcc X-AR = ar X-RANLIB = ranlib X-DEPENDFLAGS = -MM X-GNU_ANSI_FLAGS = -Wall -ansi -pedantic X-ANSI_FLAGS = ${GNU_ANSI_FLAGS} X-CFLAGS = $(ANSI_FLAGS) X+cc ?= gcc X+CC ?= gcc X+AR ?= ar X+RANLIB ?= ranlib X+DEPENDFLAGS ?= -MM X+GNU_ANSI_FLAGS ?= -Wall -ansi -pedantic X+ANSI_FLAGS ?= ${GNU_ANSI_FLAGS} X+CFLAGS ?= $(ANSI_FLAGS) X X ## Command defines X ## gmake does not work on MacOSX or some versions of linux MAKE = gmake X-RM = rm X-MV = mv X-CP = cp X-TAR = /opt/csw/bin/gtar ##/usr/freeware/bin/tar X+RM ?= rm X+MV ?= mv X+CP ?= cp X+TAR ?= /opt/csw/bin/gtar ##/usr/freeware/bin/tar X X X ## Installation END-of-science/nifticlib/files/patch-Makefile echo x - science/nifticlib/files/nifticlib.1 sed 's/^X//' >science/nifticlib/files/nifticlib.1 << 'END-of-science/nifticlib/files/nifticlib.1' X.TH NIFTICLIB 1 X.SH NAME \" Section header X.PP X XNIFTICLIB - Neuroimaging Informatics Technology Initiative data format X X.SH "DESCRIPTION" X X.B Nifticlib Xis a set of tools and libraries for maintaining a common data format Xamong neuroimaging applications. For documentation, please visit Xhttp://nifti.nimh.nih.gov/ X X.SH "SEE ALSO" Xafni(1), fsl(1), caret(1) X X.SH AUTHOR X.nf X.na XRobert Cox, PhD, et. al. X END-of-science/nifticlib/files/nifticlib.1 exit >Release-Note: >Audit-Trail: >Unformatted:
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