From owner-cvs-ports@FreeBSD.ORG Sat Aug 22 20:39:52 2009 Return-Path: Delivered-To: cvs-ports@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id D95341065690; Sat, 22 Aug 2009 20:39:51 +0000 (UTC) (envelope-from miwi@FreeBSD.org) Received: from repoman.freebsd.org (repoman.freebsd.org [IPv6:2001:4f8:fff6::29]) by mx1.freebsd.org (Postfix) with ESMTP id C93148FC17; Sat, 22 Aug 2009 20:39:51 +0000 (UTC) Received: from repoman.freebsd.org (localhost [127.0.0.1]) by repoman.freebsd.org (8.14.3/8.14.3) with ESMTP id n7MKdp17033227; Sat, 22 Aug 2009 20:39:51 GMT (envelope-from miwi@repoman.freebsd.org) Received: (from miwi@localhost) by repoman.freebsd.org (8.14.3/8.14.3/Submit) id n7MKdpn2033226; Sat, 22 Aug 2009 20:39:51 GMT (envelope-from miwi) Message-Id: <200908222039.n7MKdpn2033226@repoman.freebsd.org> From: Martin Wilke Date: Sat, 22 Aug 2009 20:39:51 +0000 (UTC) To: ports-committers@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org X-FreeBSD-CVS-Branch: HEAD Cc: Subject: cvs commit: ports/biology Makefile ports/biology/p5-Bio-NEXUS Makefile distinfo pkg-descr pkg-plist X-BeenThere: cvs-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: CVS commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 22 Aug 2009 20:39:52 -0000 miwi 2009-08-22 20:39:51 UTC FreeBSD ports repository Modified files: biology Makefile Added files: biology/p5-Bio-NEXUS Makefile distinfo pkg-descr pkg-plist Log: Bio::NEXUS package provides an object-oriented, Perl-based applications programming interface (API) to the NEXUS file format of Maddison, et al., 1997 (Syst. Biol. 46:590-621). NEXUS is a powerful and extensible format designed for use in evolutionary analysis, including the analysis of molecular sequence data as well as classical morphological and life-history data. NEXUS is the input or output format for software such as PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and so on. This package also contains the demonstration applications nexplot.pl (plot character data with a tree) and nextool.pl (allowing programmatic editing, e.g., selecting particular clades or subsets of data). WWW: http://search.cpan.org/dist/Bio-NEXUS/ PR: ports/137983 Submitted by: Wen Heping Revision Changes Path 1.112 +1 -0 ports/biology/Makefile 1.1 +38 -0 ports/biology/p5-Bio-NEXUS/Makefile (new) 1.1 +3 -0 ports/biology/p5-Bio-NEXUS/distinfo (new) 1.1 +14 -0 ports/biology/p5-Bio-NEXUS/pkg-descr (new) 1.1 +35 -0 ports/biology/p5-Bio-NEXUS/pkg-plist (new)