Date: Wed, 12 Jun 2019 23:53:33 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r504047 - head/biology/ncbi-blast+ Message-ID: <201906122353.x5CNrXJj068566@repo.freebsd.org>
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Author: jwb Date: Wed Jun 12 23:53:32 2019 New Revision: 504047 URL: https://svnweb.freebsd.org/changeset/ports/504047 Log: biology/ncbi-blast+: Upgrade to 2.9.0 Fixes build issue with gcc9 PR: 238471 Reported by: gerald Modified: head/biology/ncbi-blast+/Makefile head/biology/ncbi-blast+/distinfo head/biology/ncbi-blast+/pkg-plist Modified: head/biology/ncbi-blast+/Makefile ============================================================================== --- head/biology/ncbi-blast+/Makefile Wed Jun 12 22:26:27 2019 (r504046) +++ head/biology/ncbi-blast+/Makefile Wed Jun 12 23:53:32 2019 (r504047) @@ -1,8 +1,7 @@ # $FreeBSD$ PORTNAME= ncbi-blast+ -DISTVERSION= 2.8.1 -PORTREVISION= 2 +DISTVERSION= 2.9.0 CATEGORIES= biology perl5 python MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ Modified: head/biology/ncbi-blast+/distinfo ============================================================================== --- head/biology/ncbi-blast+/distinfo Wed Jun 12 22:26:27 2019 (r504046) +++ head/biology/ncbi-blast+/distinfo Wed Jun 12 23:53:32 2019 (r504047) @@ -1,3 +1,3 @@ -TIMESTAMP = 1545573763 -SHA256 (ncbi-blast-2.8.1+-src.tar.gz) = e03dd1a30e37cb8a859d3788a452c5d70ee1f9102d1ee0f93b2fbd145925118f -SIZE (ncbi-blast-2.8.1+-src.tar.gz) = 24973554 +TIMESTAMP = 1560352108 +SHA256 (ncbi-blast-2.9.0+-src.tar.gz) = a390cc2d7a09422759fc178db84de9def822cbe485916bbb2ec0d215dacdc257 +SIZE (ncbi-blast-2.9.0+-src.tar.gz) = 25411110 Modified: head/biology/ncbi-blast+/pkg-plist ============================================================================== --- head/biology/ncbi-blast+/pkg-plist Wed Jun 12 22:26:27 2019 (r504046) +++ head/biology/ncbi-blast+/pkg-plist Wed Jun 12 23:53:32 2019 (r504047) @@ -1,6 +1,8 @@ bin/blast_formatter +bin/blast_report bin/blastdb_aliastool bin/blastdb_convert +bin/blastdb_path bin/blastdbcheck bin/blastdbcmd bin/blastdbcp @@ -534,6 +536,76 @@ include/ncbi-tools++/html/pager.hpp include/ncbi-tools++/html/selection.hpp include/ncbi-tools++/html/writer_htmlenc.hpp include/ncbi-tools++/misc/error_codes.hpp +include/ncbi-tools++/misc/jsonwrapp/jsonwrapp.hpp +include/ncbi-tools++/misc/jsonwrapp/jsonwrapp10.hpp +include/ncbi-tools++/misc/jsonwrapp/jsonwrapp11.hpp +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/__NCBI_read_me.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/allocators.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/document.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodedstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodings.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/en.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/error.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filereadstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filewritestream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/biginteger.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/diyfp.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/dtoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/ieee754.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/itoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/meta.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/pow10.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/stack.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strfunc.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strtod.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/license.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorybuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorystream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/inttypes.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/stdint.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/pointer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/prettywriter.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/rapidjson.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/reader.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/stringbuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson10/writer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/__NCBI_read_me.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/allocators.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/document.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/encodedstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/encodings.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/error/en.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/error/error.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/filereadstream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/filewritestream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/fwd.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/biginteger.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/diyfp.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/dtoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/ieee754.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/itoa.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/meta.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/pow10.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/regex.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/stack.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strfunc.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strtod.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/swap.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamwrapper.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/license.txt +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorybuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorystream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/msinttypes/inttypes.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/msinttypes/stdint.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/ostreamwrapper.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/pointer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/prettywriter.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/rapidjson.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/reader.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/schema.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/stream.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/stringbuffer.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/writer.h include/ncbi-tools++/ncbi_pch.hpp include/ncbi-tools++/ncbi_random_macro.h include/ncbi-tools++/ncbi_source_ver.h @@ -3463,7 +3535,8 @@ include/ncbi-tools++/objtools/cleanup/autogenerated_cl include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp include/ncbi-tools++/objtools/cleanup/cleanup.hpp include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp -include/ncbi-tools++/objtools/cleanup/newcleanup.hpp +include/ncbi-tools++/objtools/cleanup/cleanup_pub.hpp +include/ncbi-tools++/objtools/cleanup/fix_feature_id.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp
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