Date: Thu, 16 Jun 2022 15:14:11 GMT From: Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 328ae4074233 - main - */*: Replace science/szip with science/libaec Message-ID: <202206161514.25GFEBA2011221@gitrepo.freebsd.org>
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The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=328ae4074233a5b85e0e38efece1af5dcc218160 commit 328ae4074233a5b85e0e38efece1af5dcc218160 Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org> AuthorDate: 2022-06-16 15:06:54 +0000 Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org> CommitDate: 2022-06-16 15:13:01 +0000 */*: Replace science/szip with science/libaec - Bump PORTREVISION of dependent ports for dependency change szip does not allow redistribution in binary form without proper commercial license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building this port, therefore building dependent ports are also blocked. Switch all dependent ports to science/libaec to avoid conflicts and license issue. PR: 228743, 246097, 250165 --- astro/oskar/Makefile | 3 ++- audio/csound/Makefile | 4 ++-- biology/kallisto/Makefile | 3 ++- cad/appcsxcad/Makefile | 3 ++- cad/csxcad/Makefile | 4 ++-- cad/gmsh/Makefile | 3 ++- graphics/alembic/Makefile | 3 ++- graphics/qgis-ltr/Makefile | 3 ++- graphics/qgis/Makefile | 3 ++- graphics/vigra/Makefile | 4 ++-- graphics/vv/Makefile | 4 ++-- math/ambit/Makefile | 3 ++- math/armadillo/Makefile | 3 ++- math/flann/Makefile | 3 ++- math/freefem++/Makefile | 3 ++- math/labplot/Makefile | 4 ++-- math/mathgl/Makefile | 4 ++-- math/mdal/Makefile | 3 ++- math/openturns/Makefile | 4 ++-- math/pdal/Makefile | 4 ++-- math/saga/Makefile | 3 ++- misc/adios2/Makefile | 3 ++- science/ALPSCore/Makefile | 4 ++-- science/InsightToolkit/Makefile | 4 ++-- science/abinit/Makefile | 4 ++-- science/ascent/Makefile | 3 ++- science/avogadrolibs/Makefile | 3 ++- science/axom/Makefile | 3 ++- science/cdo/Makefile | 3 ++- science/cgnslib/Makefile | 4 +++- science/cgribex/Makefile | 4 ++-- science/chemps2/Makefile | 3 ++- science/chrono/Makefile | 4 ++-- science/conduit/Makefile | 3 ++- science/dakota/Makefile | 4 ++-- science/dynare/Makefile | 3 ++- science/erkale/Makefile | 3 ++- science/gnudatalanguage/Makefile | 4 ++-- science/hdf/Makefile | 3 ++- science/hdf5-18/Makefile | 4 ++-- science/hdf5/Makefile | 3 ++- science/helfem/Makefile | 4 ++-- science/lammps/Makefile | 3 ++- science/netcdf/Makefile | 3 ++- science/openems/Makefile | 4 ++-- science/openmc/Makefile | 3 ++- science/openmolcas/Makefile | 3 ++- science/py-PyNE/Makefile | 4 ++-- science/qmcpack/Makefile | 4 ++-- science/rmf/Makefile | 4 ++-- science/votca/Makefile | 4 ++-- sysutils/slurm-wlm/Makefile | 3 ++- 52 files changed, 105 insertions(+), 74 deletions(-) diff --git a/astro/oskar/Makefile b/astro/oskar/Makefile index a3b2bd69c1b8..f34faf9bc5a2 100644 --- a/astro/oskar/Makefile +++ b/astro/oskar/Makefile @@ -1,5 +1,6 @@ PORTNAME= OSKAR DISTVERSION= 2.8.3 +PORTREVISION= 1 CATEGORIES= astro MAINTAINER= yuri@FreeBSD.org @@ -14,7 +15,7 @@ BROKEN_FreeBSD_12_powerpc64= fails to compile: oskar_convert_cirs_relative_direc LIB_DEPENDS= libcfitsio.so:astro/cfitsio \ libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake compiler:c++11-lang localbase:ldflags python qt:5 \ shebangfix diff --git a/audio/csound/Makefile b/audio/csound/Makefile index d4770a67ff9d..4943b200d680 100644 --- a/audio/csound/Makefile +++ b/audio/csound/Makefile @@ -2,7 +2,7 @@ PORTNAME= csound DISTVERSION= 6.15.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= audio lang MAINTAINER= yuri@FreeBSD.org @@ -91,7 +91,7 @@ FLUIDSYNTH_BROKEN= FluidSynth 2.x is broken upstream: https://github.com/csound/ HDF5_DESC= Build HDF5 read/write plugin HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec HDF5_CMAKE_BOOL= BUILD_HDF5_OPCODES JACK_DESC= Build the JACK related opcodes diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile index 3d4aecd0b9d3..d28827b7ee2a 100644 --- a/biology/kallisto/Makefile +++ b/biology/kallisto/Makefile @@ -1,6 +1,7 @@ PORTNAME= kallisto DISTVERSIONPREFIX= v DISTVERSION= 0.48.0 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= biology @@ -12,7 +13,7 @@ LICENSE_FILE= ${WRKSRC}/license.txt BUILD_DEPENDS= autoconf>=0:devel/autoconf LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libhts.so:biology/htslib USES= cmake:noninja compiler:c++11-lang gmake localbase:ldflags diff --git a/cad/appcsxcad/Makefile b/cad/appcsxcad/Makefile index bd3f82a76564..221694424c61 100644 --- a/cad/appcsxcad/Makefile +++ b/cad/appcsxcad/Makefile @@ -1,6 +1,7 @@ PORTNAME= appcsxcad DISTVERSIONPREFIX= v DISTVERSION= 0.2.2-7 +PORTREVISION= 1 DISTVERSIONSUFFIX= -gde8c271 CATEGORIES= cad @@ -18,7 +19,7 @@ LIB_DEPENDS= \ libhdf5.so:science/hdf5 \ libpng16.so:graphics/png \ libQCSXCAD.so:cad/qcsxcad \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libtiff.so:graphics/tiff \ libvtkCommonCore-8.2.so:math/vtk8 # some related packages don't support vtk9 yet, see https://github.com/thliebig/QCSXCAD/issues/6#issuecomment-901633240 diff --git a/cad/csxcad/Makefile b/cad/csxcad/Makefile index debd9eb8558d..a7ddeae89644 100644 --- a/cad/csxcad/Makefile +++ b/cad/csxcad/Makefile @@ -2,7 +2,7 @@ PORTNAME= csxcad DISTVERSIONPREFIX= v DISTVERSION= 0.6.2-103 DISTVERSIONSUFFIX= -g3c4fb66 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= cad MAINTAINER= yuri@FreeBSD.org @@ -19,7 +19,7 @@ LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhdf5.so:science/hdf5 \ libmpfr.so:math/mpfr \ libpng16.so:graphics/png \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libtiff.so:graphics/tiff \ libtinyxml.so:textproc/tinyxml \ libvtkCommonCore-8.2.so:math/vtk8 # some related packages don't support vtk9 yet, see https://github.com/thliebig/QCSXCAD/issues/6#issuecomment-901633240 diff --git a/cad/gmsh/Makefile b/cad/gmsh/Makefile index d1265eb03ca4..2370e67e0376 100644 --- a/cad/gmsh/Makefile +++ b/cad/gmsh/Makefile @@ -2,6 +2,7 @@ PORTNAME= gmsh DISTVERSION= 4.9.2 +PORTREVISION= 1 CATEGORIES= cad MASTER_SITES= http://gmsh.info/src/ DISTNAME= ${PORTNAME}-${PORTVERSION}-source @@ -18,7 +19,7 @@ LIB_DEPENDS= libfltk.so:x11-toolkits/fltk \ libgmp.so:math/gmp \ libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libfreetype.so:print/freetype2 RUN_DEPENDS= getdp:science/getdp diff --git a/graphics/alembic/Makefile b/graphics/alembic/Makefile index 95de2628970b..cd15e5bf8f69 100644 --- a/graphics/alembic/Makefile +++ b/graphics/alembic/Makefile @@ -2,6 +2,7 @@ PORTNAME= alembic PORTVERSION= 1.8.3 +PORTREVISION= 1 CATEGORIES= graphics MAINTAINER= danfe@FreeBSD.org @@ -10,7 +11,7 @@ COMMENT= Open framework for storing and sharing graphic scene data LICENSE= BSD3CLAUSE LIB_DEPENDS= libImath.so:math/Imath -LIB_DEPENDS+= libsz.so:science/szip +LIB_DEPENDS+= libsz.so:science/libaec USES= cmake compiler:c++11-lang USE_CXXSTD= c++11 diff --git a/graphics/qgis-ltr/Makefile b/graphics/qgis-ltr/Makefile index e6c10ac207c7..74e795553ccf 100644 --- a/graphics/qgis-ltr/Makefile +++ b/graphics/qgis-ltr/Makefile @@ -2,6 +2,7 @@ PORTNAME= qgis DISTVERSION= 3.22.7 +PORTREVISION= 1 CATEGORIES= graphics geography MASTER_SITES= https://qgis.org/downloads/ PKGNAMESUFFIX= -ltr @@ -52,7 +53,7 @@ LIB_DEPENDS= libexiv2.so:graphics/exiv2 \ libqwt6.so:x11-toolkits/qwt6 \ libspatialindex.so:devel/spatialindex \ libspatialite.so:databases/spatialite \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libxerces-c.so:textproc/xerces-c3 \ libzip.so:archivers/libzip \ libzstd.so:archivers/zstd diff --git a/graphics/qgis/Makefile b/graphics/qgis/Makefile index f7ba01ac3f65..a84b4d0407ad 100644 --- a/graphics/qgis/Makefile +++ b/graphics/qgis/Makefile @@ -2,6 +2,7 @@ PORTNAME= qgis DISTVERSION= 3.24.3 +PORTREVISION= 1 CATEGORIES= graphics geography MASTER_SITES= https://qgis.org/downloads/ @@ -51,7 +52,7 @@ LIB_DEPENDS= libexiv2.so:graphics/exiv2 \ libqwt6.so:x11-toolkits/qwt6 \ libspatialindex.so:devel/spatialindex \ libspatialite.so:databases/spatialite \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libxerces-c.so:textproc/xerces-c3 \ libzip.so:archivers/libzip \ libzstd.so:archivers/zstd diff --git a/graphics/vigra/Makefile b/graphics/vigra/Makefile index 8199e7f767ed..b0c6be34fec8 100644 --- a/graphics/vigra/Makefile +++ b/graphics/vigra/Makefile @@ -3,7 +3,7 @@ PORTNAME= vigra DISTVERSIONPREFIX=v DISTVERSION= 1.11.1 -PORTREVISION= 20 +PORTREVISION= 21 CATEGORIES= graphics MAINTAINER= ports@FreeBSD.org @@ -13,7 +13,7 @@ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt LIB_DEPENDS= libImath.so:math/Imath \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake compiler:c++14-lang python:run shebangfix USE_GITHUB= yes diff --git a/graphics/vv/Makefile b/graphics/vv/Makefile index ff8f75db3ed0..498d345b932c 100644 --- a/graphics/vv/Makefile +++ b/graphics/vv/Makefile @@ -2,7 +2,7 @@ PORTNAME= vv DISTVERSIONPREFIX= v DISTVERSION= 1.4.0-383 DISTVERSIONSUFFIX= -g7a783a8b -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= graphics MAINTAINER= yuri@FreeBSD.org @@ -18,7 +18,7 @@ LIB_DEPENDS= libexpat.so:textproc/expat2 \ libhdf5_cpp.so:science/hdf5 \ libITKLabelMap-5.0.so:science/InsightToolkit \ libpng.so:graphics/png \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libtiff.so:graphics/tiff \ libvtkIOSQL-8.2.so:math/vtk8 diff --git a/math/ambit/Makefile b/math/ambit/Makefile index 8a5940ccc07a..f596c0e5f59d 100644 --- a/math/ambit/Makefile +++ b/math/ambit/Makefile @@ -1,6 +1,7 @@ PORTNAME= ambit DISTVERSIONPREFIX= v DISTVERSION= 0.6 +PORTREVISION= 1 CATEGORIES= math PKGNAMESUFFIX= -tensor # avoid clash with shells/ambit @@ -12,7 +13,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ libopenblas.so:math/openblas \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake:testing compiler:c++11-lang python:build USE_LDCONFIG= yes diff --git a/math/armadillo/Makefile b/math/armadillo/Makefile index d44c4169d02b..3678da6576f0 100644 --- a/math/armadillo/Makefile +++ b/math/armadillo/Makefile @@ -1,5 +1,6 @@ PORTNAME= armadillo PORTVERSION= 11.2.0 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= SF/arma @@ -14,7 +15,7 @@ LIB_DEPENDS= libarpack.so:math/arpack-ng \ libhdf5.so:science/hdf5 \ liblapack.so:math/lapack \ libsuperlu.so:math/superlu \ - libsz.so:science/szip + libsz.so:science/libaec USES= blaslapack:openblas cmake compiler:c++11-lang pkgconfig tar:xz diff --git a/math/flann/Makefile b/math/flann/Makefile index 8de1262028ac..30114a68bcb3 100644 --- a/math/flann/Makefile +++ b/math/flann/Makefile @@ -1,5 +1,6 @@ PORTNAME= flann DISTVERSION= 1.9.2 +PORTREVISION= 1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org @@ -10,7 +11,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libhdf5.so:science/hdf5 \ liblz4.so:archivers/liblz4 \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake compiler:c++11-lang localbase:ldflags pkgconfig USE_LDCONFIG= yes diff --git a/math/freefem++/Makefile b/math/freefem++/Makefile index 1327f4483769..87c8007a9ac2 100644 --- a/math/freefem++/Makefile +++ b/math/freefem++/Makefile @@ -3,6 +3,7 @@ PORTNAME= freefem++ DISTVERSIONPREFIX= v DISTVERSION= 4.11 +PORTREVISION= 1 CATEGORIES= math science MAINTAINER= yuri@FreeBSD.org @@ -28,7 +29,7 @@ LIB_DEPENDS= libhdf5.so:science/hdf5 \ libcmumps.so:math/mumps \ libnlopt.so:math/nlopt \ libsuperlu.so:math/superlu \ - libsz.so:science/szip + libsz.so:science/libaec RUN_DEPENDS= bash:shells/bash \ pipe:misc/pipe diff --git a/math/labplot/Makefile b/math/labplot/Makefile index a37a37fdaf09..67eea7aa4932 100644 --- a/math/labplot/Makefile +++ b/math/labplot/Makefile @@ -2,7 +2,7 @@ PORTNAME= labplot DISTVERSION= 2.8.2 -PORTREVISION= 16 +PORTREVISION= 17 CATEGORIES= math kde MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION} @@ -19,7 +19,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgsl.so:math/gsl \ liblz4.so:archivers/liblz4 \ libspectre.so:print/libspectre \ - libsz.so:science/szip + libsz.so:science/libaec USES= bison cmake compiler:c++11-lang desktop-file-utils kde:5 qt:5 \ shared-mime-info tar:xz diff --git a/math/mathgl/Makefile b/math/mathgl/Makefile index 79d0992bae49..c58a726f7c2c 100644 --- a/math/mathgl/Makefile +++ b/math/mathgl/Makefile @@ -1,6 +1,6 @@ PORTNAME= mathgl DISTVERSION= 2.5 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math graphics MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/ @@ -16,7 +16,7 @@ LIB_DEPENDS= libgif.so:graphics/giflib \ libhpdf.so:print/libharu \ libltdl.so:devel/libltdl \ libpng.so:graphics/png \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake compiler:c++11-lang gettext-runtime gl jpeg xorg USE_GL= gl glu glut diff --git a/math/mdal/Makefile b/math/mdal/Makefile index 9b46205fb112..c6580aa2614a 100644 --- a/math/mdal/Makefile +++ b/math/mdal/Makefile @@ -2,6 +2,7 @@ PORTNAME= mdal DISTVERSION= 0.9.4 +PORTREVISION= 1 CATEGORIES= math geography MAINTAINER= wen@FreeBSD.org @@ -16,7 +17,7 @@ LIB_DEPENDS= libpdal_base.so:math/pdal \ libsqlite3.so:databases/sqlite3 \ libgdal.so:graphics/gdal \ libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake gnome localbase USE_GNOME= libxml2 diff --git a/math/openturns/Makefile b/math/openturns/Makefile index e4615c26d033..b2c071adb738 100644 --- a/math/openturns/Makefile +++ b/math/openturns/Makefile @@ -1,7 +1,7 @@ PORTNAME= openturns DISTVERSIONPREFIX= v DISTVERSION= 1.19 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org @@ -48,7 +48,7 @@ LIB_DEPENDS= libamd.so:math/suitesparse-amd \ libprimesieve.so:math/primesieve \ libspqr.so:math/suitesparse-spqr \ libsuitesparseconfig.so:math/suitesparse-config \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libtbb.so:devel/onetbb \ libunwind.so:devel/libunwind diff --git a/math/pdal/Makefile b/math/pdal/Makefile index d9760708c942..d37f817a5ac4 100644 --- a/math/pdal/Makefile +++ b/math/pdal/Makefile @@ -2,7 +2,7 @@ PORTNAME= pdal DISTVERSION= 2.3.0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math databases graphics MASTER_SITES= https://github.com/PDAL/PDAL/releases/download/${DISTVERSION}/ DISTNAME= ${PORTNAME}-${DISTVERSION}-src @@ -59,7 +59,7 @@ BASH_RUN_DEPENDS= bash:shells/bash ICEBRIDGE_CMAKE_BOOL= BUILD_PLUGIN_ICEBRIDGE ICEBRIDGE_LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec LAZPERF_CMAKE_BOOL= WITH_LAZPERF LAZPERF_LIB_DEPENDS= liblazperf.so:archivers/lazperf diff --git a/math/saga/Makefile b/math/saga/Makefile index 0b1ddf09b913..c124604fbc06 100644 --- a/math/saga/Makefile +++ b/math/saga/Makefile @@ -2,6 +2,7 @@ PORTNAME= saga PORTVERSION= 8.2.2 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= SF/saga-gis/SAGA%20-%20${PORTVERSION:C/\.[[:digit:]]\.[[:digit:]]*$//}/SAGA%20-%20${PORTVERSION} @@ -25,7 +26,7 @@ LIB_DEPENDS= libcurl.so:ftp/curl \ libproj.so:graphics/proj \ libqhull_r.so:math/qhull \ libsvm.so:science/libsvm \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libtiff.so:graphics/tiff RUN_DEPENDS:= swig:devel/swig diff --git a/misc/adios2/Makefile b/misc/adios2/Makefile index 9887fabbd772..f4826ef0583a 100644 --- a/misc/adios2/Makefile +++ b/misc/adios2/Makefile @@ -1,6 +1,7 @@ PORTNAME= adios2 DISTVERSIONPREFIX= v DISTVERSION= 2.8.1 +PORTREVISION= 1 CATEGORIES= misc science MAINTAINER= yuri@FreeBSD.org @@ -26,7 +27,7 @@ LIB_DEPENDS= libblosc.so:archivers/c-blosc \ libmpi.so:net/mpich \ libpng.so:graphics/png \ libsodium.so:security/libsodium \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libzmq.so:net/libzmq4 \ libzfp.so:devel/zfp RUN_DEPENDS= bash:shells/bash \ diff --git a/science/ALPSCore/Makefile b/science/ALPSCore/Makefile index d4460f92ffd2..d6992a62de5d 100644 --- a/science/ALPSCore/Makefile +++ b/science/ALPSCore/Makefile @@ -1,7 +1,7 @@ PORTNAME= ALPSCore DISTVERSIONPREFIX= v DISTVERSION= 2.2.0 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= science MAINTAINER= ports@FreeBSD.org @@ -14,7 +14,7 @@ BROKEN_i386= fails to build: no matching member function for call to 'read' LIB_DEPENDS= libboost_system.so:devel/boost-libs \ libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake compiler:c++11-lang eigen:3 USE_GITHUB= yes diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile index 189e1931d920..419af12711c5 100644 --- a/science/InsightToolkit/Makefile +++ b/science/InsightToolkit/Makefile @@ -3,7 +3,7 @@ PORTNAME= InsightToolkit PORTVERSION= 5.0.1 DISTVERSIONPREFIX=v -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= science biology MASTER_SITES= https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.0.1/:data DISTFILES= InsightData-5.0.1.tar.gz:data @@ -19,7 +19,7 @@ LIB_DEPENDS= libgdcmCommon.so:devel/gdcm \ libfftw.so:math/fftw \ libhdf5.so:science/hdf5 \ libpng.so:graphics/png \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libtiff.so:graphics/tiff USES= cmake compiler:c++11-lang eigen:3 jpeg pkgconfig diff --git a/science/abinit/Makefile b/science/abinit/Makefile index 96b74303b2c3..49a68b01c2e0 100644 --- a/science/abinit/Makefile +++ b/science/abinit/Makefile @@ -2,7 +2,7 @@ PORTNAME= abinit DISTVERSION= 9.4.2 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -19,7 +19,7 @@ BUILD_DEPENDS= gm4:devel/m4 \ ${PYTHON_PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}graphviz>0:graphics/py-graphviz@${PY_FLAVOR} LIB_DEPENDS= libelpa.so:math/elpa \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libelpa.so:math/elpa \ libxc.so:science/libxc \ libfftw3.so:math/fftw3 \ diff --git a/science/ascent/Makefile b/science/ascent/Makefile index 65aeca47aeb2..77b6b2a0042f 100644 --- a/science/ascent/Makefile +++ b/science/ascent/Makefile @@ -1,6 +1,7 @@ PORTNAME= ascent DISTVERSIONPREFIX= v DISTVERSION= 0.8.0 +PORTREVISION= 1 CATEGORIES= science PKGNAMESUFFIX= -visualizer @@ -14,7 +15,7 @@ LIB_DEPENDS= libconduit.so:science/conduit \ libhdf5.so:science/hdf5 \ libsiloh5.so:science/silo \ libsysinfo.so:devel/libsysinfo \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake:testing compiler:c++11-lang fortran localbase:ldflags diff --git a/science/avogadrolibs/Makefile b/science/avogadrolibs/Makefile index 37dad2dca8c0..fa146caa1036 100644 --- a/science/avogadrolibs/Makefile +++ b/science/avogadrolibs/Makefile @@ -1,5 +1,6 @@ PORTNAME= avogadrolibs DISTVERSION= 1.95.1 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -27,7 +28,7 @@ OPTIONS_SUB= yes HDF5_CMAKE_BOOL= USE_HDF5 HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec LIBARCHIVE_DESC= Enable optional Libarchive features LIBARCHIVE_CMAKE_BOOL= USE_LIBARCHIVE diff --git a/science/axom/Makefile b/science/axom/Makefile index 250a27ae4001..8792a4fa1a93 100644 --- a/science/axom/Makefile +++ b/science/axom/Makefile @@ -1,6 +1,7 @@ PORTNAME= axom DISTVERSIONPREFIX= v DISTVERSION= 0.6.1 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -15,7 +16,7 @@ BROKEN_powerpc= https://github.com/LLNL/axom/issues/743 LIB_DEPENDS= libconduit.so:science/conduit \ libhdf5.so:science/hdf5 \ libsiloh5.so:science/silo \ - libsz.so:science/szip + libsz.so:science/libaec RUN_DEPENDS= sparsehash>0:devel/sparsehash USES= cmake compiler:c++11-lang diff --git a/science/cdo/Makefile b/science/cdo/Makefile index 15444dd2dfa7..da2a1f823586 100644 --- a/science/cdo/Makefile +++ b/science/cdo/Makefile @@ -2,6 +2,7 @@ PORTNAME= cdo PORTVERSION= 2.0.5 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/26823/ \ LOCAL/sunpoet @@ -54,7 +55,7 @@ NETCDF_LIB_DEPENDS= libnetcdf.so:science/netcdf PROJ_CONFIGURE_WITH= proj PROJ_LIB_DEPENDS= libproj.so:graphics/proj SZIP_CONFIGURE_WITH= szlib -SZIP_LIB_DEPENDS= libsz.so:science/szip +SZIP_LIB_DEPENDS= libsz.so:science/libaec UDUNITS_CONFIGURE_WITH= udunits2 UDUNITS_LIB_DEPENDS= libudunits2.so:science/udunits UUID_CONFIGURE_OFF= ac_cv_func_uuid_create=no ac_cv_have_decl_uuid_create=no ac_cv_have_decl_uuid_generate=no ac_cv_lib_uuid_uuid_generate=no diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile index 0611a1aff8d5..0b1d574c80d8 100644 --- a/science/cgnslib/Makefile +++ b/science/cgnslib/Makefile @@ -3,6 +3,7 @@ PORTNAME= cgnslib PORTVERSION= 4.3.0 DISTVERSIONPREFIX= v +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= science @@ -37,7 +38,8 @@ TOOLS_DESC= Build the CGNSTools package FORTRAN_USES= fortran FORTRAN_CMAKE_BOOL= CGNS_ENABLE_FORTRAN -HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 libsz.so:science/szip +HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libsz.so:science/libaec HDF5_CMAKE_BOOL= CGNS_ENABLE_HDF5 HDF5_CMAKE_ON= -DHDF5_INCLUDE_PATH:PATH="${LOCALBASE}/include" diff --git a/science/cgribex/Makefile b/science/cgribex/Makefile index 3cd45742337a..dedba8523f3e 100644 --- a/science/cgribex/Makefile +++ b/science/cgribex/Makefile @@ -2,7 +2,7 @@ PORTNAME= cgribex PORTVERSION= 1.9.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= https://code.mpimet.mpg.de/attachments/download/21178/ \ LOCAL/sunpoet @@ -28,7 +28,7 @@ GRIB_API_LIB_DEPENDS= libgrib_api.so:science/grib_api JASPER_CONFIGURE_WITH= jasper=${LOCALBASE} JASPER_LIB_DEPENDS= libjasper.so:graphics/jasper SZIP_CONFIGURE_WITH= szlib=${LOCALBASE} -SZIP_LIB_DEPENDS= libsz.so:science/szip +SZIP_LIB_DEPENDS= libsz.so:science/libaec post-configure: @${REINPLACE_CMD} -e 's|-Ino/include||g; s|-Lno/lib||g' ${WRKSRC}/Makefile ${WRKSRC}/*/Makefile diff --git a/science/chemps2/Makefile b/science/chemps2/Makefile index cbd79e8e0565..4fea31cc72cb 100644 --- a/science/chemps2/Makefile +++ b/science/chemps2/Makefile @@ -1,6 +1,7 @@ PORTNAME= CheMPS2 DISTVERSIONPREFIX= v DISTVERSION= 1.8.12 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -10,7 +11,7 @@ LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec USES= blaslapack:openblas cmake fortran USE_LDCONFIG= yes diff --git a/science/chrono/Makefile b/science/chrono/Makefile index 42b206a2f53c..6c46d90fc27a 100644 --- a/science/chrono/Makefile +++ b/science/chrono/Makefile @@ -1,6 +1,6 @@ PORTNAME= chrono DISTVERSION= 7.0.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science devel PKGNAMESUFFIX= -physics-simulation-engine @@ -84,7 +84,7 @@ OPENGL_USE= GL=gl,glu,glew OPENGL_BUILD_DEPENDS= ${LOCALBASE}/include/glm/glm.hpp:math/glm OPENGL_LIB_DEPENDS= libglfw.so:graphics/glfw -VEHICLE_LIB_DEPENDS= libsz.so:science/szip \ +VEHICLE_LIB_DEPENDS= libsz.so:science/libaec \ libmpi.so:net/openmpi .for module in ${ALL_MODULES} diff --git a/science/conduit/Makefile b/science/conduit/Makefile index baeadd0dc9d4..c49627744622 100644 --- a/science/conduit/Makefile +++ b/science/conduit/Makefile @@ -1,6 +1,7 @@ PORTNAME= conduit DISTVERSIONPREFIX= v DISTVERSION= 0.8.3 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -12,7 +13,7 @@ LICENSE_FILE= ${WRKSRC}/../LICENSE LIB_DEPENDS= libhdf5.so:science/hdf5 \ libmpi_cxx.so:net/openmpi \ libsiloh5.so:science/silo \ - libsz.so:science/szip + libsz.so:science/libaec USES= cmake:testing compiler:c++11-lang fortran USE_LDCONFIG= yes diff --git a/science/dakota/Makefile b/science/dakota/Makefile index 50520aba8696..824252641ab1 100644 --- a/science/dakota/Makefile +++ b/science/dakota/Makefile @@ -1,6 +1,6 @@ PORTNAME= dakota DISTVERSION= 6.15.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/ DISTNAME= ${PORTNAME}-${DISTVERSION}-public-src-cli @@ -19,7 +19,7 @@ LIB_DEPENDS= libblas.so:math/blas \ libhdf5.so:science/hdf5 \ liblapack.so:math/lapack \ libnlopt.so:math/nlopt \ - libsz.so:science/szip + libsz.so:science/libaec RUN_DEPENDS= bash:shells/bash USES= cmake compiler:c++11-lang fortran motif perl5 pkgconfig python shebangfix xorg diff --git a/science/dynare/Makefile b/science/dynare/Makefile index 59e21deada34..b004eddfb238 100644 --- a/science/dynare/Makefile +++ b/science/dynare/Makefile @@ -1,5 +1,6 @@ PORTNAME= dynare DISTVERSION= 5.1 +PORTREVISION= 1 CATEGORIES= science # economics MASTER_SITES= https://www.dynare.org/release/source/ @@ -15,7 +16,7 @@ BUILD_DEPENDS= ${LOCALBASE}/include/boost/tokenizer.hpp:devel/boost-libs LIB_DEPENDS= libhdf5.so:science/hdf5 \ libmatio.so:math/matio \ libopenblas.so:math/openblas \ - libsz.so:science/szip + libsz.so:science/libaec RUN_DEPENDS= epstool:graphics/epstool \ gnuplot:math/gnuplot \ pstoedit:graphics/pstoedit \ diff --git a/science/erkale/Makefile b/science/erkale/Makefile index 1638baadf1d4..8555996330c5 100644 --- a/science/erkale/Makefile +++ b/science/erkale/Makefile @@ -1,5 +1,6 @@ PORTNAME= erkale DISTVERSION= g20220405 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -15,7 +16,7 @@ LIB_DEPENDS= libderiv.so:science/libint \ libgsl.so:math/gsl \ libhdf5.so:science/hdf5 \ libint.so:science/libint \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libxc.so:science/libxc RUN_DEPENDS= ${LOCALBASE}/share/erkale/basis/6-21G.gbs:science/erkale-pseudopotentials diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index 38089180b737..1be2972fbe74 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -3,7 +3,7 @@ PORTNAME= gnudatalanguage PORTVERSION= 1.0.1 DISTVERSIONPREFIX= v -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science lang .if defined(BUILD_PYTHON_MODULE) PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -20,7 +20,7 @@ LIB_DEPENDS+= libgeotiff.so:graphics/libgeotiff\ libtiff.so:graphics/tiff \ libshp.so:devel/shapelib \ libpng.so:graphics/png \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libps.so:print/pslib \ libgsl.so:math/gsl diff --git a/science/hdf/Makefile b/science/hdf/Makefile index a565101a1f89..6dab0d3ef722 100644 --- a/science/hdf/Makefile +++ b/science/hdf/Makefile @@ -2,6 +2,7 @@ PORTNAME= hdf PORTVERSION= 4.2.15 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= science archivers graphics MASTER_SITES= http://www.hdfgroup.org/ftp/HDF/releases/HDF${PORTVERSION}/src/ \ @@ -13,7 +14,7 @@ COMMENT= Hierarchical Data Format library (from NCSA) NOT_FOR_ARCHS= aarch64 armv6 armv7 NOT_FOR_ARCHS_REASON= fails to compile: no machine type has been defined -LIB_DEPENDS= libsz.so:science/szip +LIB_DEPENDS= libsz.so:science/libaec CONFLICTS_INSTALL= netcdf-4.[0-9]* diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile index a436e9d42621..bb5f149f01ec 100644 --- a/science/hdf5-18/Makefile +++ b/science/hdf5-18/Makefile @@ -2,7 +2,7 @@ PORTNAME= hdf5 PORTVERSION= 1.8.21 # When PORTVERSION changes, please update french/med/files/patch-configure -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science archivers graphics MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${PORTNAME}-${PORTVERSION}/src/ \ http://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/${PORTNAME}-${PORTVERSION}/src/ \ @@ -52,7 +52,7 @@ PLIST_SUB+= FORTRAN="@comment " .endif .if ${PORT_OPTIONS:MSZIP} -LIB_DEPENDS+= libsz.so:science/szip +LIB_DEPENDS+= libsz.so:science/libaec CONFIGURE_ARGS+=--with-szlib=${LOCALBASE} .endif diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile index 5b5039aed81a..8e0133176a16 100644 --- a/science/hdf5/Makefile +++ b/science/hdf5/Makefile @@ -2,6 +2,7 @@ PORTNAME= hdf5 PORTVERSION= 1.10.6 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= science archivers graphics MASTER_SITES= https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \ @@ -45,7 +46,7 @@ PARALLEL_CONFIGURE_ENABLE= parallel PARALLEL_LDFLAGS= -L${LOCALBASE}/lib -lmpi PARALLEL_LIB_DEPENDS= libmpi.so:net/mpich SZIP_CONFIGURE_ON= --with-szlib=${LOCALBASE} -SZIP_LIB_DEPENDS= libsz.so:science/szip +SZIP_LIB_DEPENDS= libsz.so:science/libaec post-patch: @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags diff --git a/science/helfem/Makefile b/science/helfem/Makefile index 1ef0c371f7c4..af210d8e0afd 100644 --- a/science/helfem/Makefile +++ b/science/helfem/Makefile @@ -1,6 +1,6 @@ PORTNAME= helfem DISTVERSION= g20210912 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science # chemistry MAINTAINER= yuri@FreeBSD.org @@ -12,7 +12,7 @@ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libarmadillo.so:math/armadillo \ libgsl.so:math/gsl \ libhdf5_cpp.so:science/hdf5 \ - libsz.so:science/szip \ + libsz.so:science/libaec \ libxc.so:science/libxc USES= cmake fortran diff --git a/science/lammps/Makefile b/science/lammps/Makefile index f0915f1d1df9..a6d9c6d3a0e0 100644 --- a/science/lammps/Makefile +++ b/science/lammps/Makefile @@ -1,5 +1,6 @@ PORTNAME= lammps PORTVERSION= ${GH_TAGNAME:C/(stable|patch)_([0-9]{1,2})([A-Z][a-z][a-z])([0-9]{4})/\4.\3.\2/S/Jan/01/S/Feb/02/S/Mar/03/S/Apr/04/S/May/05/S/Jun/06/S/Jul/07/S/Aug/08/S/Sep/09/S/Oct/10/S/Nov/11/S/Dec/12/} +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -81,7 +82,7 @@ GZIP_CMAKE_BOOL= WITH_GZIP H5MD_DESC= USER-H5MD package based on libhdf5 H5MD_CMAKE_BOOL= PKG_USER-H5MD H5MD_LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libsz.so:science/szip + libsz.so:science/libaec KIM_DESC= KIM package based on the OpenKim library/repository KIM_USES= pkgconfig diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile index 01df33791388..c749369cfa21 100644 *** 188 LINES SKIPPED ***
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