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Tue, 19 Jan 2021 09:41:55 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 10J9ftDe067567; Tue, 19 Jan 2021 09:41:55 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 10J9fs1x067562; Tue, 19 Jan 2021 09:41:54 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202101190941.10J9fs1x067562@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Tue, 19 Jan 2021 09:41:54 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r562038 - in head/biology: . edlib X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology: . edlib X-SVN-Commit-Revision: 562038 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 19 Jan 2021 09:41:55 -0000 Author: yuri Date: Tue Jan 19 09:41:54 2021 New Revision: 562038 URL: https://svnweb.freebsd.org/changeset/ports/562038 Log: New port: biology/edlib: Fast C++ library for sequence alignment using edit distance Added: head/biology/edlib/ head/biology/edlib/Makefile (contents, props changed) head/biology/edlib/distinfo (contents, props changed) head/biology/edlib/pkg-descr (contents, props changed) head/biology/edlib/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Tue Jan 19 09:32:33 2021 (r562037) +++ head/biology/Makefile Tue Jan 19 09:41:54 2021 (r562038) @@ -29,6 +29,7 @@ SUBDIR += ddocent SUBDIR += diamond SUBDIR += dsr-pdb + SUBDIR += edlib SUBDIR += emboss SUBDIR += exonerate SUBDIR += fasta Added: head/biology/edlib/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/edlib/Makefile Tue Jan 19 09:41:54 2021 (r562038) @@ -0,0 +1,23 @@ +# $FreeBSD$ + +PORTNAME= edlib +DISTVERSION= 1.2.6.20201202 +CATEGORIES= biology + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Fast C++ library for sequence alignment using edit distance + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= cmake +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= Martinsos +GH_TAGNAME= d5774b4 + +CMAKE_ON= BUILD_SHARED_LIBS +CMAKE_OFF= EDLIB_BUILD_EXAMPLES + +.include Added: head/biology/edlib/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/edlib/distinfo Tue Jan 19 09:41:54 2021 (r562038) @@ -0,0 +1,3 @@ +TIMESTAMP = 1611049035 +SHA256 (Martinsos-edlib-1.2.6.20201202-d5774b4_GH0.tar.gz) = 7ad9f8a8a92641ec25f0b8fcc5ac83184c442e422b04211eaddc8a5c864927fd +SIZE (Martinsos-edlib-1.2.6.20201202-d5774b4_GH0.tar.gz) = 4318606 Added: head/biology/edlib/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/edlib/pkg-descr Tue Jan 19 09:41:54 2021 (r562038) @@ -0,0 +1,4 @@ +A lightweight and super fast C/C++ library for sequence alignment using edit +distance. + +WWW: https://github.com/Martinsos/edlib Added: head/biology/edlib/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/edlib/pkg-plist Tue Jan 19 09:41:54 2021 (r562038) @@ -0,0 +1,9 @@ +include/edlib.h +lib/cmake/edlib/edlib-config-version.cmake +lib/cmake/edlib/edlib-config.cmake +lib/cmake/edlib/edlib-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/edlib/edlib-targets.cmake +lib/libedlib.so +lib/libedlib.so.1 +lib/libedlib.so.1.2.6 +libdata/pkgconfig/edlib-1.pc