Date: Wed, 13 Feb 2019 03:58:01 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][devel/R-cran-ModelMetrics] Failed for R-cran-ModelMetrics-1.2.2_1 in stage Message-ID: <201902130358.x1D3w1tG050814@beefy8.nyi.freebsd.org>
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Maintainer: tota@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/devel/R-cran-ModelMetrics/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p492744_s344025/logs/R-cran-ModelMetrics-1.2.2_1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p492744_s344025 Log: =>> Building devel/R-cran-ModelMetrics build started at Wed Feb 13 03:55:35 UTC 2019 port directory: /usr/ports/devel/R-cran-ModelMetrics package name: R-cran-ModelMetrics-1.2.2_1 building for: FreeBSD head-armv6-default-job-11 13.0-CURRENT FreeBSD 13.0-CURRENT 1300010 arm maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: head/devel/R-cran-ModelMetrics/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8 Host OSVERSION: 1300009 Jail OSVERSION: 1300010 Job Id: 11 !!! Jail is newer than host. (Jail: 1300010, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300010 UNAME_v=FreeBSD 13.0-CURRENT 1300010 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-stri ct-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/ModelMetrics OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ModelMetrics" EXAMPLESDIR="share/examples/ModelMetrics" DATADIR="share/ModelMetrics" WWWDIR="www/ModelMetrics" ETCDIR="etc/ModelMetrics" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ModelMetrics DOCSDIR=/usr/local/share/doc/ModelMetrics EXAMPLESDIR=/usr/local/share/examples/ModelMetrics WWWDIR=/usr/local/www/ModelMetrics ETCDIR=/usr/local/etc/ModelMetrics --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300010 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-ModelMetrics-1.2.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-armv6-default-job-11] Installing pkg-1.10.5_5... [head-armv6-default-job-11] Extracting pkg-1.10.5_5: .......... done ===> R-cran-ModelMetrics-1.2.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-ModelMetrics-1.2.2_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2+ accepted by the user <snip> [head-armv6-default-job-11] | | `-- Extracting libXt-1.1.5_2,1: .......... done [head-armv6-default-job-11] | `-- Extracting libXmu-1.1.2_5,1: .......... done [head-armv6-default-job-11] | `-- Installing pango-1.42.4_1... [head-armv6-default-job-11] | | `-- Installing encodings-1.0.4_4,1... [head-armv6-default-job-11] | | `-- Installing font-util-1.3.1... [head-armv6-default-job-11] | | `-- Extracting font-util-1.3.1: .......... done [head-armv6-default-job-11] | | `-- Extracting encodings-1.0.4_4,1: .......... done [head-armv6-default-job-11] | | `-- Installing fribidi-0.19.7... [head-armv6-default-job-11] | | `-- Extracting fribidi-0.19.7: .......... done [head-armv6-default-job-11] | | `-- Installing harfbuzz-2.3.1... [head-armv6-default-job-11] | | `-- Installing graphite2-1.3.13... [head-armv6-default-job-11] | | `-- Extracting graphite2-1.3.13: .......... done [head-armv6-default-job-11] | | `-- Extracting harfbuzz-2.3.1: .......... done [head-armv6-default-job-11] | | `-- Installing libXft-2.3.2_3... [head-armv6-default-job-11] | | `-- Extracting libXft-2.3.2_3: .......... done [head-armv6-default-job-11] | | `-- Installing xorg-fonts-truetype-7.7_1... [head-armv6-default-job-11] | | `-- Installing dejavu-2.37... [head-armv6-default-job-11] | | | `-- Installing mkfontdir-1.0.7... [head-armv6-default-job-11] | | | `-- Installing mkfontscale-1.1.3_2... [head-armv6-default-job-11] | | | | `-- Installing libfontenc-1.1.3_3... [head-armv6-default-job-11] | | | | `-- Extracting libfontenc-1.1.3_3: ......... done [head-armv6-default-job-11] | | | `-- Extracting mkfontscale-1.1.3_2: ..... done [head-armv6-default-job-11] | | | `-- Extracting mkfontdir-1.0.7: ..... done [head-armv6-default-job-11] | | `-- Extracting dejavu-2.37: .......... done [head-armv6-default-job-11] | | `-- Installing font-bh-ttf-1.0.3_3... [head-armv6-default-job-11] | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done [head-armv6-default-job-11] | | `-- Installing font-misc-ethiopic-1.0.3_3... [head-armv6-default-job-11] | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done [head-armv6-default-job-11] | | `-- Installing font-misc-meltho-1.0.3_3... [head-armv6-default-job-11] | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done [head-armv6-default-job-11] | `-- Extracting pango-1.42.4_1: .......... done [head-armv6-default-job-11] | `-- Installing tcl86-8.6.9... [head-armv6-default-job-11] | `-- Extracting tcl86-8.6.9: .......... done [head-armv6-default-job-11] | `-- Installing tk86-8.6.9... [head-armv6-default-job-11] | `-- Extracting tk86-8.6.9: .......... done [head-armv6-default-job-11] `-- Extracting R-3.5.2: .......... done [head-armv6-default-job-11] Extracting R-cran-Rcpp-1.0.0_1: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.42.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc8-8.2.0_4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from python36-3.6.8: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.26: This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-ModelMetrics-1.2.2_1 depends on package: R-cran-Rcpp>0 - found ===> Returning to build of R-cran-ModelMetrics-1.2.2_1 ===> R-cran-ModelMetrics-1.2.2_1 depends on package: R-cran-data.table>0 - not found ===> Installing existing package /packages/All/R-cran-data.table-1.11.8_1.txz [head-armv6-default-job-11] Installing R-cran-data.table-1.11.8_1... [head-armv6-default-job-11] Extracting R-cran-data.table-1.11.8_1: .......... done ===> R-cran-ModelMetrics-1.2.2_1 depends on package: R-cran-data.table>0 - found ===> Returning to build of R-cran-ModelMetrics-1.2.2_1 ===> R-cran-ModelMetrics-1.2.2_1 depends on file: /usr/local/bin/R - found ===> R-cran-ModelMetrics-1.2.2_1 depends on executable: gfortran8 - found ===> R-cran-ModelMetrics-1.2.2_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-ModelMetrics-1.2.2_1 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-ModelMetrics-1.2.2_1 depends on package: R-cran-Rcpp>0 - found ===> R-cran-ModelMetrics-1.2.2_1 depends on package: R-cran-data.table>0 - found ===> R-cran-ModelMetrics-1.2.2_1 depends on file: /usr/local/bin/R - found ===> R-cran-ModelMetrics-1.2.2_1 depends on executable: gfortran8 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-ModelMetrics-1.2.2_1 ===> Generating temporary packing list * installing *source* package 'ModelMetrics' ... ** package 'ModelMetrics' successfully unpacked and MD5 sums checked ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/ModelMetrics/src' /nxb-bin/usr/bin/c++ -I"/usr/local/lib/R/include" -DNDEBUG -I"/usr/local/lib/R/library/Rcpp/include" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o /nxb-bin/usr/bin/c++ -I"/usr/local/lib/R/include" -DNDEBUG -I"/usr/local/lib/R/library/Rcpp/include" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c auc_.cpp -o auc_.o auc_.cpp:2:10: fatal error: 'omp.h' file not found #include <omp.h> ^~~~~~~ 1 error generated. gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:169: auc_.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/ModelMetrics/src' ERROR: compilation failed for package 'ModelMetrics' * removing '/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/stage/usr/local/lib/R/library/ModelMetrics' *** Error code 1 Stop. make: stopped in /usr/ports/devel/R-cran-ModelMetrics
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