Date: Tue, 31 Jan 2017 23:37:58 +0000 (UTC) From: Nikolai Lifanov <lifanov@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r432959 - in head/science: . libgeodecomp libgeodecomp/files Message-ID: <201701312337.v0VNbwN6040792@repo.freebsd.org>
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Author: lifanov Date: Tue Jan 31 23:37:58 2017 New Revision: 432959 URL: https://svnweb.freebsd.org/changeset/ports/432959 Log: add science/libgeodecomp - auto-parallelizing library for computer simulations LibGeoDecomp (Library for Geometric Decomposition codes) is an auto-parallelizing library for computer simulations. It is specifically targeted computational science applications in the context of supercomputers and heterogeneous systems. The library eases development of such tightly coupled codes by essentially taking over the parallel programming: it handles both, the parallelization itself and parameter tuning. This enables scientists to focus on their simulation code, rather than the technical details of the parallel computer. PR: 213688 Submitted by: Kurt Kanzenbach <kurt@kmk-computers.de> Reviewed by: matthew Approved by: matthew (mentor) Differential Revision: https://reviews.freebsd.org/D9390 Added: head/science/libgeodecomp/ head/science/libgeodecomp/Makefile (contents, props changed) head/science/libgeodecomp/distinfo (contents, props changed) head/science/libgeodecomp/files/ head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp (contents, props changed) head/science/libgeodecomp/files/patch-src_CMakeLists.txt (contents, props changed) head/science/libgeodecomp/pkg-descr (contents, props changed) head/science/libgeodecomp/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Tue Jan 31 21:25:30 2017 (r432958) +++ head/science/Makefile Tue Jan 31 23:37:58 2017 (r432959) @@ -70,6 +70,7 @@ SUBDIR += lamprop SUBDIR += libaec SUBDIR += libctl + SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libint SUBDIR += libkml Added: head/science/libgeodecomp/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/libgeodecomp/Makefile Tue Jan 31 23:37:58 2017 (r432959) @@ -0,0 +1,43 @@ +# Created by: Kurt Kanzenbach <kurt@kmk-computers.de> +# $FreeBSD$ + +PORTNAME= libgeodecomp +PORTVERSION= 0.4.0 +CATEGORIES= science devel +MASTER_SITES= http://www.libgeodecomp.org/archive/ + +MAINTAINER= kurt@kmk-computers.de +COMMENT= LibGeoDecomp is an auto-parallelizing library for computer simulations + +LICENSE= BSL +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libboost_system.so:devel/boost-libs libboost_date_time.so:devel/boost-libs \ + libboost_filesystem.so:devel/boost-libs + +USES= cmake:outsource compiler:c++11-lib +USE_GCC= yes +USE_LDCONFIG= yes + +CMAKE_ARGS= -DWITH_CUDA:BOOL=FALSE -DWITH_VISIT:BOOL=FALSE \ + -DWITH_HPX:BOOL=FALSE -DWITH_OPENCL:BOOL=FALSE \ + -DWITH_OPENCV:BOOL=FALSE -DWITH_TYPEMAPS=FALSE + +OPTIONS_DEFINE= MPI QT4 SILO SCOTCH +OPTIONS_DEFAULT= MPI QT4 SILO SCOTCH + +MPI_LIB_DEPENDS= libmpich.so:net/mpich2 +MPI_CMAKE_BOOL= WITH_MPI + +QT4_USE= QT4=corelib,gui,opengl,qmake_build,moc_build,rcc_build,uic_build +QT4_CMAKE_BOOL= WITH_QT + +SILO_DESC= Enable Silo dependend output +SILO_LIB_DEPENDS= libsiloh5.so:science/silo +SILO_CMAKE_BOOL= WITH_SILO + +SCOTCH_DESC= Enable graph partitioning based on Scotch/Scotch-PT +SCOTCH_BUILD_DEPENDS= ${LOCALBASE}/lib/libscotch.a:cad/scotch +SCOTCH_CMAKE_BOOL= WITH_SCOTCH + +.include <bsd.port.mk> Added: head/science/libgeodecomp/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/libgeodecomp/distinfo Tue Jan 31 23:37:58 2017 (r432959) @@ -0,0 +1,3 @@ +TIMESTAMP = 1476973737 +SHA256 (libgeodecomp-0.4.0.tar.gz) = f1a4fbc0c04952a148cbe186f36fc9e2307f7b0ecaf6960b56f2135ca3b8fa4e +SIZE (libgeodecomp-0.4.0.tar.gz) = 1022767 Added: head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp Tue Jan 31 23:37:58 2017 (r432959) @@ -0,0 +1,16 @@ +--- lib/libflatarray/src/aligned_allocator.hpp.orig 2014-10-28 09:12:48 UTC ++++ lib/libflatarray/src/aligned_allocator.hpp +@@ -8,13 +8,7 @@ + #ifndef FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP + #define FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP + +-#ifdef __APPLE__ + #include <cstddef> +-#include <stdlib.h> +-#else +-#include <malloc.h> +-#endif +- + #include <memory> + + namespace LibFlatArray { Added: head/science/libgeodecomp/files/patch-src_CMakeLists.txt ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/libgeodecomp/files/patch-src_CMakeLists.txt Tue Jan 31 23:37:58 2017 (r432959) @@ -0,0 +1,11 @@ +--- src/CMakeLists.txt.orig 2016-10-17 18:06:32 UTC ++++ src/CMakeLists.txt +@@ -575,7 +575,7 @@ Version: ${PACKAGE_VERSION} + Libs: ${INSTALLER_LINK_FLAGS} + Cflags: -I${CMAKE_INSTALL_PREFIX}/include ${PKG_CONFIG_INCLUDE_FLAGS} + ") +-install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "${LIB_DIR}/pkgconfig") ++install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "libdata/pkgconfig") + + set(ConfigPackageLocation lib/cmake/${PACKAGE_NAME}) + Added: head/science/libgeodecomp/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/libgeodecomp/pkg-descr Tue Jan 31 23:37:58 2017 (r432959) @@ -0,0 +1,10 @@ +LibGeoDecomp (Library for Geometric Decomposition codes) is an +auto-parallelizing library for computer simulations. It is specifically targeted +computational science applications in the context of supercomputers and +heterogeneous systems. The library eases development of such tightly coupled +codes by essentially taking over the parallel programming: it handles both, the +parallelization itself and parameter tuning. This enables scientists to focus on +their simulation code, rather than the technical details of the parallel +computer. + +WWW: http://www.libgeodecomp.org/ Added: head/science/libgeodecomp/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/libgeodecomp/pkg-plist Tue Jan 31 23:37:58 2017 (r432959) @@ -0,0 +1,195 @@ +include/libflatarray/aggregated_member_size.hpp +include/libflatarray/aligned_allocator.hpp +include/libflatarray/api_traits.hpp +include/libflatarray/coord.hpp +include/libflatarray/cuda_allocator.hpp +include/libflatarray/detail/dual_callback_helper.hpp +include/libflatarray/detail/get_set_instance_functor.hpp +include/libflatarray/detail/load_save_functor.hpp +include/libflatarray/detail/macros.hpp +include/libflatarray/detail/offset.hpp +include/libflatarray/detail/set_byte_size_functor.hpp +include/libflatarray/detail/short_vec_avx_float_8.hpp +include/libflatarray/detail/short_vec_qpx_double_4.hpp +include/libflatarray/detail/short_vec_sse_double_8.hpp +include/libflatarray/detail/short_vec_sse_float_16.hpp +include/libflatarray/detail/short_vec_sse_float_8.hpp +include/libflatarray/detail/sqrt_reference.hpp +include/libflatarray/flat_array.hpp +include/libflatarray/macros.hpp +include/libflatarray/member_ptr_to_offset.hpp +include/libflatarray/number_of_members.hpp +include/libflatarray/short_vec.hpp +include/libflatarray/soa_accessor.hpp +include/libflatarray/soa_array.hpp +include/libflatarray/soa_grid.hpp +include/libflatarray/testbed/benchmark.hpp +include/libflatarray/testbed/cpu_benchmark.hpp +include/libflatarray/testbed/evaluate.hpp +include/libflatarray/testbed/gpu_benchmark.hpp +include/libgeodecomp.h +include/libgeodecomp/communication/mpilayer.h +include/libgeodecomp/communication/patchlink.h +include/libgeodecomp/communication/serialization.h +include/libgeodecomp/communication/typemaps.h +include/libgeodecomp/config.h +include/libgeodecomp/geometry/coord.h +include/libgeodecomp/geometry/coordbox.h +include/libgeodecomp/geometry/cudaregion.h +include/libgeodecomp/geometry/fixedcoord.h +include/libgeodecomp/geometry/floatcoord.h +include/libgeodecomp/geometry/partitionmanager.h +include/libgeodecomp/geometry/partitions/checkerboardingpartition.h +include/libgeodecomp/geometry/partitions/hilbertpartition.h +include/libgeodecomp/geometry/partitions/hindexingpartition.h +include/libgeodecomp/geometry/partitions/partition.h +include/libgeodecomp/geometry/partitions/ptscotchpartition.h +include/libgeodecomp/geometry/partitions/recursivebisectionpartition.h +include/libgeodecomp/geometry/partitions/scotchpartition.h +include/libgeodecomp/geometry/partitions/spacefillingcurve.h +include/libgeodecomp/geometry/partitions/stripingpartition.h +include/libgeodecomp/geometry/partitions/zcurvepartition.h +include/libgeodecomp/geometry/region.h +include/libgeodecomp/geometry/regionstreakiterator.h +include/libgeodecomp/geometry/stencils.h +include/libgeodecomp/geometry/streak.h +include/libgeodecomp/geometry/topologies.h +include/libgeodecomp/geometry/voronoimesher.h +include/libgeodecomp/io/asciiwriter.h +include/libgeodecomp/io/bovwriter.h +include/libgeodecomp/io/collectingwriter.h +include/libgeodecomp/io/hpxwritercollector.h +include/libgeodecomp/io/hpxwritersink.h +include/libgeodecomp/io/hpxwritersinkserver.h +include/libgeodecomp/io/imagepainter.h +include/libgeodecomp/io/initializer.h +include/libgeodecomp/io/ioexception.h +include/libgeodecomp/io/logger.h +include/libgeodecomp/io/memorywriter.h +include/libgeodecomp/io/mockinitializer.h +include/libgeodecomp/io/mocksteerer.h +include/libgeodecomp/io/mockwriter.h +include/libgeodecomp/io/mpiio.h +include/libgeodecomp/io/mpiioinitializer.h +include/libgeodecomp/io/mpiiowriter.h +include/libgeodecomp/io/parallelmemorywriter.h +include/libgeodecomp/io/parallelmpiiowriter.h +include/libgeodecomp/io/paralleltestwriter.h +include/libgeodecomp/io/parallelwriter.h +include/libgeodecomp/io/plotter.h +include/libgeodecomp/io/ppmwriter.h +include/libgeodecomp/io/qtwidgetwriter.h +include/libgeodecomp/io/remotesteerer.h +include/libgeodecomp/io/serialbovwriter.h +include/libgeodecomp/io/silowriter.h +include/libgeodecomp/io/simplecellplotter.h +include/libgeodecomp/io/simpleinitializer.h +include/libgeodecomp/io/steerer.h +include/libgeodecomp/io/testinitializer.h +include/libgeodecomp/io/teststeerer.h +include/libgeodecomp/io/testwriter.h +include/libgeodecomp/io/tracingwriter.h +include/libgeodecomp/io/visitwriter.h +include/libgeodecomp/io/writer.h +include/libgeodecomp/loadbalancer/biasbalancer.h +include/libgeodecomp/loadbalancer/loadbalancer.h +include/libgeodecomp/loadbalancer/mockbalancer.h +include/libgeodecomp/loadbalancer/noopbalancer.h +include/libgeodecomp/loadbalancer/oozebalancer.h +include/libgeodecomp/loadbalancer/randombalancer.h +include/libgeodecomp/loadbalancer/tracingbalancer.h +include/libgeodecomp/misc/apitraits.h +include/libgeodecomp/misc/chronometer.h +include/libgeodecomp/misc/clonable.h +include/libgeodecomp/misc/color.h +include/libgeodecomp/misc/cudautil.h +include/libgeodecomp/misc/fpscounter.h +include/libgeodecomp/misc/math.h +include/libgeodecomp/misc/mpitest.h +include/libgeodecomp/misc/nonpodtestcell.h +include/libgeodecomp/misc/optimizer.h +include/libgeodecomp/misc/palette.h +include/libgeodecomp/misc/patternoptimizer.h +include/libgeodecomp/misc/quickpalette.h +include/libgeodecomp/misc/random.h +include/libgeodecomp/misc/scopedtimer.h +include/libgeodecomp/misc/simplexoptimizer.h +include/libgeodecomp/misc/simulationfactory.h +include/libgeodecomp/misc/simulationparameters.h +include/libgeodecomp/misc/stdcontaineroverloads.h +include/libgeodecomp/misc/stringops.h +include/libgeodecomp/misc/stringvec.h +include/libgeodecomp/misc/tempfile.h +include/libgeodecomp/misc/testcell.h +include/libgeodecomp/misc/testhelper.h +include/libgeodecomp/parallelization/cacheblockingsimulator.h +include/libgeodecomp/parallelization/cudasimulator.h +include/libgeodecomp/parallelization/distributedsimulator.h +include/libgeodecomp/parallelization/hiparsimulator.h +include/libgeodecomp/parallelization/hiparsimulator/commonstepper.h +include/libgeodecomp/parallelization/hiparsimulator/cudastepper.h +include/libgeodecomp/parallelization/hiparsimulator/multicorestepper.h +include/libgeodecomp/parallelization/hiparsimulator/offsethelper.h +include/libgeodecomp/parallelization/hiparsimulator/openclstepper.h +include/libgeodecomp/parallelization/hiparsimulator/parallelwriteradapter.h +include/libgeodecomp/parallelization/hiparsimulator/steereradapter.h +include/libgeodecomp/parallelization/hiparsimulator/stepper.h +include/libgeodecomp/parallelization/hiparsimulator/updategroup.h +include/libgeodecomp/parallelization/hiparsimulator/vanillastepper.h +include/libgeodecomp/parallelization/hpxsimulator.h +include/libgeodecomp/parallelization/hpxsimulator/createupdategroups.h +include/libgeodecomp/parallelization/hpxsimulator/hpxstepper.h +include/libgeodecomp/parallelization/hpxsimulator/patchlink.h +include/libgeodecomp/parallelization/hpxsimulator/updategroup.h +include/libgeodecomp/parallelization/hpxsimulator/updategroupserver.h +include/libgeodecomp/parallelization/mocksimulator.h +include/libgeodecomp/parallelization/monolithicsimulator.h +include/libgeodecomp/parallelization/serialsimulator.h +include/libgeodecomp/parallelization/simulator.h +include/libgeodecomp/parallelization/stripingsimulator.h +include/libgeodecomp/storage/boxcell.h +include/libgeodecomp/storage/collectioninterface.h +include/libgeodecomp/storage/containercell.h +include/libgeodecomp/storage/coordmap.h +include/libgeodecomp/storage/cudaarray.h +include/libgeodecomp/storage/cudagrid.h +include/libgeodecomp/storage/dataaccessor.h +include/libgeodecomp/storage/defaultfilter.h +include/libgeodecomp/storage/displacedgrid.h +include/libgeodecomp/storage/filter.h +include/libgeodecomp/storage/filterbase.h +include/libgeodecomp/storage/fixedarray.h +include/libgeodecomp/storage/fixedneighborhood.h +include/libgeodecomp/storage/grid.h +include/libgeodecomp/storage/gridbase.h +include/libgeodecomp/storage/gridtypeselector.h +include/libgeodecomp/storage/gridvecconv.h +include/libgeodecomp/storage/image.h +include/libgeodecomp/storage/linepointerassembly.h +include/libgeodecomp/storage/linepointerneighborhood.h +include/libgeodecomp/storage/linepointerupdatefunctor.h +include/libgeodecomp/storage/meshlessadapter.h +include/libgeodecomp/storage/mockpatchaccepter.h +include/libgeodecomp/storage/multicontainercell.h +include/libgeodecomp/storage/neighborhoodadapter.h +include/libgeodecomp/storage/neighborhooditerator.h +include/libgeodecomp/storage/patchaccepter.h +include/libgeodecomp/storage/patchbuffer.h +include/libgeodecomp/storage/patchbufferfixed.h +include/libgeodecomp/storage/patchprovider.h +include/libgeodecomp/storage/pointerneighborhood.h +include/libgeodecomp/storage/selector.h +include/libgeodecomp/storage/sellcsigmasparsematrixcontainer.h +include/libgeodecomp/storage/serializationbuffer.h +include/libgeodecomp/storage/simplefilter.h +include/libgeodecomp/storage/soagrid.h +include/libgeodecomp/storage/unstructuredgrid.h +include/libgeodecomp/storage/updatefunctor.h +include/libgeodecomp/storage/updatefunctortestbase.h +include/libgeodecomp/storage/vanillaupdatefunctor.h +lib/cmake/libgeodecomp/libgeodecomp-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/libgeodecomp/libgeodecomp-targets.cmake +lib/cmake/libgeodecomp/libgeodecompConfig.cmake +lib/cmake/libgeodecomp/libgeodecompConfigVersion.cmake +lib/libgeodecomp.so +libdata/pkgconfig/libgeodecomp.pc
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