Date: Sun, 23 Aug 2020 04:33:14 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][biology/lagan] Failed for lagan-2.0_1 in build Message-ID: <202008230433.07N4XEn3034105@beefy18.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: pawel@FreeBSD.org Ident: $FreeBSD: head/biology/lagan/Makefile 405652 2016-01-09 18:26:40Z pawel $ Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p545731_s364466/logs/lagan-2.0_1.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p545731_s364466 Log: =>> Building biology/lagan build started at Sun Aug 23 04:33:09 UTC 2020 port directory: /usr/ports/biology/lagan package name: lagan-2.0_1 building for: FreeBSD head-amd64-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300110 amd64 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/lagan/Makefile 405652 2016-01-09 18:26:40Z pawel $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300110 Job Id: 13 !!! Jail is newer than host. (Jail: 1300110, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300110 UNAME_v=FreeBSD 13.0-CURRENT 1300110 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lagan/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lagan/work HOME=/wrkdirs/usr/ports/biology/lagan/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/lagan/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lagan/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lagan/work HOME=/wrkdirs/usr/ports/biology/lagan/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/lagan/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.0 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/lagan" EXAMPLESDIR="share/examples/lagan" DATADIR="share/lagan" WWWDIR="www/lagan" ETCDIR="etc/lagan" --End PLIST_SUB-- --SUB_LIST-- LAGAN_DIR="/usr/local/lagan" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lagan DOCSDIR=/usr/local/share/doc/lagan EXAMPLESDIR=/usr/local/share/examples/lagan WWWDIR=/usr/local/www/lagan ETCDIR=/usr/local/etc/lagan --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300110 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The lagan port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> lagan-2.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.7.txz [head-amd64-default-job-13] Installing pkg-1.14.7... [head-amd64-default-job-13] Extracting pkg-1.14.7: .......... done ===> lagan-2.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of lagan-2.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The lagan port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lagan-2.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: The lagan port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lagan-2.0_1 for building => SHA256 Checksum OK for lagan20.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> NOTICE: The lagan port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by lagan-2.0_1 for building ===> Extracting for lagan-2.0_1 => SHA256 Checksum OK for lagan20.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for lagan-2.0_1 ===> Applying FreeBSD patches for lagan-2.0_1 from /usr/ports/biology/lagan/files =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for lagan-2.0_1 =========================================================================== =======================<phase: build >============================ ===> Building for lagan-2.0_1 (cd src; /usr/bin/make) cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o ../anchors anchors.c skiplist.c skiplist.c:12:37: warning: format specifies type 'unsigned int' but the argument has type 'void *' [-Wformat] printf(" %d %x\n", tbp->index, tbp->myelem); ~~ ^~~~~~~~~~~ 1 warning generated. cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG fchaos.c:357:59: warning: data argument not used by format string [-Wformat-extra-args] fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ 1 warning generated. In file included from thrtrie.c:13: ./mempage.c:48:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. skiplist.c:12:37: warning: format specifies type 'unsigned int' but the argument has type 'void *' [-Wformat] printf(" %d %x\n", tbp->index, tbp->myelem); ~~ ^~~~~~~~~~~ 1 warning generated. global.c:172:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. filebuffer.c:123:34: warning: implicitly declaring library function 'toupper' with type 'int (int)' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^ filebuffer.c:123:34: note: include the header <ctype.h> or explicitly provide a declaration for 'toupper' 1 warning generated. ld: error: duplicate symbol: indeces >>> defined at fchaos.c >>> /tmp/fchaos-f050c0.o:(indeces) >>> defined at thrtrie.c >>> /tmp/thrtrie-2b9d05.o:(.bss+0x20) cc: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/lagan/work/lagan20/src *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/lagan/work/lagan20 *** Error code 1 Stop. make: stopped in /usr/ports/biology/lagan
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