From owner-svn-ports-head@FreeBSD.ORG Wed May 6 20:30:54 2015 Return-Path: Delivered-To: svn-ports-head@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id E1E21CB9; Wed, 6 May 2015 20:30:54 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id B60801939; Wed, 6 May 2015 20:30:54 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id t46KUs9r018263; Wed, 6 May 2015 20:30:54 GMT (envelope-from pi@FreeBSD.org) Received: (from pi@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id t46KUsFn018260; Wed, 6 May 2015 20:30:54 GMT (envelope-from pi@FreeBSD.org) Message-Id: <201505062030.t46KUsFn018260@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: pi set sender to pi@FreeBSD.org using -f From: Kurt Jaeger Date: Wed, 6 May 2015 20:30:54 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r385561 - head/biology/seqtools X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 06 May 2015 20:30:55 -0000 Author: pi Date: Wed May 6 20:30:53 2015 New Revision: 385561 URL: https://svnweb.freebsd.org/changeset/ports/385561 Log: biology/seqtools: 4.33 -> 4.34.1 Blixem - Added functionality to shift-select a range of coordinates, and copy the reference/match sequence for that range. - DNA search now highlights the resultant range of coordinates. - Added a splitter bar to allow the variations track to be resized. - Dotter Fix a crash pressing Esc on an undocked alignment or greyramp tool. - All Code reorganisation: the codebase is now in C++ rather than C, and a new module 'gbtools' has been created for generic utility functions. Modified: head/biology/seqtools/Makefile head/biology/seqtools/distinfo head/biology/seqtools/pkg-plist Modified: head/biology/seqtools/Makefile ============================================================================== --- head/biology/seqtools/Makefile Wed May 6 20:23:50 2015 (r385560) +++ head/biology/seqtools/Makefile Wed May 6 20:30:53 2015 (r385561) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= seqtools -PORTVERSION= 4.33 +PORTVERSION= 4.34.1 CATEGORIES= biology MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/ Modified: head/biology/seqtools/distinfo ============================================================================== --- head/biology/seqtools/distinfo Wed May 6 20:23:50 2015 (r385560) +++ head/biology/seqtools/distinfo Wed May 6 20:30:53 2015 (r385561) @@ -1,2 +1,2 @@ -SHA256 (seqtools-4.33.tar.gz) = db60af1dfc8893564b1166fde52154da249c6d50aba2b76412193a75e79618ca -SIZE (seqtools-4.33.tar.gz) = 5403131 +SHA256 (seqtools-4.34.1.tar.gz) = 77c383d151fd19faa2d24aa3444d4d19527464d0823b58d5a40857fd494a595a +SIZE (seqtools-4.34.1.tar.gz) = 3267808 Modified: head/biology/seqtools/pkg-plist ============================================================================== --- head/biology/seqtools/pkg-plist Wed May 6 20:23:50 2015 (r385560) +++ head/biology/seqtools/pkg-plist Wed May 6 20:30:53 2015 (r385561) @@ -2,6 +2,10 @@ bin/belvu bin/blixem bin/blixemh bin/dotter +include/gbtools/gbtools.hpp +include/gbtools/gbtoolsGUI.hpp +include/gbtools/gbtoolsUtils.hpp +lib/libgbtools.a %%PORTDOCS%%%%DOCSDIR%%/Belvu_manual.pdf %%PORTDOCS%%%%DOCSDIR%%/Blixem_manual.pdf %%PORTDOCS%%%%DOCSDIR%%/Dotter_manual.pdf