Date: Wed, 6 May 2015 20:30:54 +0000 (UTC) From: Kurt Jaeger <pi@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r385561 - head/biology/seqtools Message-ID: <201505062030.t46KUsFn018260@svn.freebsd.org>
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Author: pi Date: Wed May 6 20:30:53 2015 New Revision: 385561 URL: https://svnweb.freebsd.org/changeset/ports/385561 Log: biology/seqtools: 4.33 -> 4.34.1 Blixem - Added functionality to shift-select a range of coordinates, and copy the reference/match sequence for that range. - DNA search now highlights the resultant range of coordinates. - Added a splitter bar to allow the variations track to be resized. - Dotter Fix a crash pressing Esc on an undocked alignment or greyramp tool. - All Code reorganisation: the codebase is now in C++ rather than C, and a new module 'gbtools' has been created for generic utility functions. Modified: head/biology/seqtools/Makefile head/biology/seqtools/distinfo head/biology/seqtools/pkg-plist Modified: head/biology/seqtools/Makefile ============================================================================== --- head/biology/seqtools/Makefile Wed May 6 20:23:50 2015 (r385560) +++ head/biology/seqtools/Makefile Wed May 6 20:30:53 2015 (r385561) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= seqtools -PORTVERSION= 4.33 +PORTVERSION= 4.34.1 CATEGORIES= biology MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/ Modified: head/biology/seqtools/distinfo ============================================================================== --- head/biology/seqtools/distinfo Wed May 6 20:23:50 2015 (r385560) +++ head/biology/seqtools/distinfo Wed May 6 20:30:53 2015 (r385561) @@ -1,2 +1,2 @@ -SHA256 (seqtools-4.33.tar.gz) = db60af1dfc8893564b1166fde52154da249c6d50aba2b76412193a75e79618ca -SIZE (seqtools-4.33.tar.gz) = 5403131 +SHA256 (seqtools-4.34.1.tar.gz) = 77c383d151fd19faa2d24aa3444d4d19527464d0823b58d5a40857fd494a595a +SIZE (seqtools-4.34.1.tar.gz) = 3267808 Modified: head/biology/seqtools/pkg-plist ============================================================================== --- head/biology/seqtools/pkg-plist Wed May 6 20:23:50 2015 (r385560) +++ head/biology/seqtools/pkg-plist Wed May 6 20:30:53 2015 (r385561) @@ -2,6 +2,10 @@ bin/belvu bin/blixem bin/blixemh bin/dotter +include/gbtools/gbtools.hpp +include/gbtools/gbtoolsGUI.hpp +include/gbtools/gbtoolsUtils.hpp +lib/libgbtools.a %%PORTDOCS%%%%DOCSDIR%%/Belvu_manual.pdf %%PORTDOCS%%%%DOCSDIR%%/Blixem_manual.pdf %%PORTDOCS%%%%DOCSDIR%%/Dotter_manual.pdf
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