Date: Mon, 1 Sep 2014 21:50:15 +0000 (UTC) From: Thierry Thomas <thierry@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r366964 - in head: benchmarks/hpl benchmarks/imb benchmarks/mdtest cad/scotch math/blacs math/blocksolve95 math/mumps math/parmetis math/scalapack math/sdpara math/spooles net/mpich2 ne... Message-ID: <201409012150.s81LoFfK086508@svn.freebsd.org>
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Author: thierry Date: Mon Sep 1 21:50:14 2014 New Revision: 366964 URL: http://svnweb.freebsd.org/changeset/ports/366964 QAT: https://qat.redports.org/buildarchive/r366964/ Log: - Upgrade to 1.5; - Bump PORTREVISION for consumers. Deleted: head/net/mpich2/files/patch-src_packaging_pkgconfig_Makefile.in Modified: head/benchmarks/hpl/Makefile head/benchmarks/imb/Makefile head/benchmarks/mdtest/Makefile head/cad/scotch/Makefile head/math/blacs/Makefile head/math/blocksolve95/Makefile head/math/mumps/Makefile head/math/parmetis/Makefile head/math/scalapack/Makefile head/math/sdpara/Makefile head/math/spooles/Makefile head/net/mpich2/Makefile head/net/mpich2/distinfo head/net/mpich2/files/patch-Makefile.in head/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in head/net/mpich2/files/patch-src_openpa_Makefile.in head/net/mpich2/pkg-plist head/science/fvm/Makefile head/science/gromacs/Makefile head/science/ncs/Makefile head/science/pnetcdf/Makefile Modified: head/benchmarks/hpl/Makefile ============================================================================== --- head/benchmarks/hpl/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/benchmarks/hpl/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= hpl PORTVERSION= 2.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= benchmarks MASTER_SITES= ${MASTER_SITE_NETLIB} MASTER_SITE_SUBDIR= benchmark/hpl Modified: head/benchmarks/imb/Makefile ============================================================================== --- head/benchmarks/imb/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/benchmarks/imb/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= imb PORTVERSION= 3.0 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= benchmarks parallel MASTER_SITES= ${MASTER_SITE_LOCAL} \ http://cache-www.intel.com/cd/00/00/32/71/ Modified: head/benchmarks/mdtest/Makefile ============================================================================== --- head/benchmarks/mdtest/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/benchmarks/mdtest/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= mdtest PORTVERSION= 1.9.3 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= benchmarks MASTER_SITES= SF/${PORTNAME}/${PORTNAME}%20latest/${PORTNAME}-${PORTVERSION} EXTRACT_SUFX= .tgz Modified: head/cad/scotch/Makefile ============================================================================== --- head/cad/scotch/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/cad/scotch/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= scotch DISTVERSION= 5.1.12b_esmumps -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= cad science MASTER_SITES= https://gforge.inria.fr/frs/download.php/28978/ DISTNAME= ${PORTNAME}_${DISTVERSION} Modified: head/math/blacs/Makefile ============================================================================== --- head/math/blacs/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/blacs/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= blacs PORTVERSION= 1.7 -PORTREVISION= 20 +PORTREVISION= 21 CATEGORIES= math MASTER_SITES= ${MASTER_SITE_NETLIB} MASTER_SITE_SUBDIR=blacs Modified: head/math/blocksolve95/Makefile ============================================================================== --- head/math/blocksolve95/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/blocksolve95/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= blocksolve95 PORTVERSION= 3.0 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= math parallel MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/BlockSolve95/ \ http://ftp.mcs.anl.gov/pub/BlockSolve95/ Modified: head/math/mumps/Makefile ============================================================================== --- head/math/mumps/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/mumps/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= mumps PORTVERSION= 4.10.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= http://mumps.enseeiht.fr/ \ http://graal.ens-lyon.fr/MUMPS/ \ Modified: head/math/parmetis/Makefile ============================================================================== --- head/math/parmetis/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/parmetis/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= ParMetis PORTVERSION= 4.0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= math parallel MASTER_SITES= http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/%SUBDIR%/ MASTER_SITE_SUBDIR= . OLD Modified: head/math/scalapack/Makefile ============================================================================== --- head/math/scalapack/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/scalapack/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= scalapack PORTVERSION= 2.0.2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= ${MASTER_SITE_NETLIB} MASTER_SITE_SUBDIR=${PORTNAME} Modified: head/math/sdpara/Makefile ============================================================================== --- head/math/sdpara/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/sdpara/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= sdpara PORTVERSION= 7.2.1 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= math parallel MASTER_SITES= http://sdpa.indsys.chuo-u.ac.jp/sdpa/files/ DISTFILES= ${SRCFILE}#${MANUALFILE} Modified: head/math/spooles/Makefile ============================================================================== --- head/math/spooles/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/math/spooles/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= spooles PORTVERSION= 2.2 -PORTREVISION= 11 +PORTREVISION= 12 CATEGORIES= math MASTER_SITES= http://www.netlib.org/linalg/spooles/ .ifdef WITH_MPI Modified: head/net/mpich2/Makefile ============================================================================== --- head/net/mpich2/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/net/mpich2/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= mpich2 -DISTVERSION= 1.4.1p1 +DISTVERSION= 1.5 PORTEPOCH= 5 CATEGORIES= net java parallel MASTER_SITES= http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/${DISTVERSION}/ @@ -55,8 +55,8 @@ NOCCACHE= yes CONFLICTS= lam-7.* mpd-[0-9]* mpiexec-0.* MAKE_JOBS_UNSAFE= yes -VERSO= 3.3 -VERSOM= ${VERSO:R} +VERSO= 8.0.1 +VERSOM= ${VERSO:R:R} PLIST_SUB= VER=${VERSO} VERM=${VERSOM} SUB_FILES= pkg-message Modified: head/net/mpich2/distinfo ============================================================================== --- head/net/mpich2/distinfo Mon Sep 1 21:42:59 2014 (r366963) +++ head/net/mpich2/distinfo Mon Sep 1 21:50:14 2014 (r366964) @@ -1,2 +1,2 @@ -SHA256 (mpich/mpich2-1.4.1p1.tar.gz) = a20f798ceaad6b0161ddecac98623b65d6a4033072f39ced13b9043916e3d1ee -SIZE (mpich/mpich2-1.4.1p1.tar.gz) = 19502854 +SHA256 (mpich/mpich2-1.5.tar.gz) = 7175926fc2e4230f00201e880318c08de4f949c0dbe167fe1b2e256ac79d5f66 +SIZE (mpich/mpich2-1.5.tar.gz) = 22826035 Modified: head/net/mpich2/files/patch-Makefile.in ============================================================================== --- head/net/mpich2/files/patch-Makefile.in Mon Sep 1 21:42:59 2014 (r366963) +++ head/net/mpich2/files/patch-Makefile.in Mon Sep 1 21:50:14 2014 (r366964) @@ -1,24 +1,11 @@ ---- Makefile.in.orig 2011-09-01 20:55:44.000000000 +0200 -+++ Makefile.in 2014-08-25 19:43:34.000000000 +0200 -@@ -202,16 +202,16 @@ - if [ -s $(srcdir)/doc/installguide/install.pdf ] ; then $(INSTALL_DATA) $(srcdir)/doc/installguide/install.pdf ${DESTDIR}${docdir}/install.pdf ; fi - if [ -s $(srcdir)/doc/smpd/smpd_pmi.pdf ] ; then $(INSTALL_DATA) $(srcdir)/doc/smpd/smpd_pmi.pdf ${DESTDIR}${docdir}/smpd_pmi.pdf ; fi - if [ -s $(srcdir)/doc/logging/logging.pdf ] ; then $(INSTALL_DATA) $(srcdir)/doc/logging/logging.pdf ${DESTDIR}${docdir}/logging.pdf ; fi -- (cd src/env && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) -- (cd src/packaging/pkgconfig && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) -- (cd src/packaging/envmods && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) -+ (cd src/env && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) -+ (cd src/packaging/pkgconfig && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) -+ (cd src/packaging/envmods && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) - for dir in @bindings_dirs@ - ; do \ - if [ "$$dir" = "-" ] ; then break ; fi ;\ -- (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) ;\ -+ (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) ;\ - done - for dir in @other_install_dirs@ - ; do \ - if [ "$$dir" = "-" ] ; then break ; fi ;\ -- (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) prefix=${DESTDIR}${prefix} exec_prefix=${DESTDIR}${exec_prefix} bindir=${DESTDIR}${bindir} libdir=${DESTDIR}${libdir} includedir=${DESTDIR}${includedir} install) ;\ -+ (cd $$dir && $(MAKE) INSTALL_STRIP_FLAG=$(INSTALL_STRIP_FLAG) PACKAGE=$(PACKAGE) install) ;\ - done +--- Makefile.in.orig 2012-10-08 21:02:46.000000000 +0200 ++++ Makefile.in 2014-08-31 22:55:10.000000000 +0200 +@@ -6153,7 +6153,7 @@ + CLEAN_LOCAL_TARGETS = test-clean $(am__append_125) - install-strip: + # used by nodist_pkgconfig_DATA +-pkgconfigdir = $(libdir)/pkgconfig ++pkgconfigdir = $(libdir)data/pkgconfig + + # contains all of the "errnames.txt" files that are used by maint/extracterrmsgs + # to build src/mpi/errhan/defmsg.h Modified: head/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in ============================================================================== --- head/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in Mon Sep 1 21:42:59 2014 (r366963) +++ head/net/mpich2/files/patch-src_mpe2_src_sbin_mpeinstall.in Mon Sep 1 21:50:14 2014 (r366964) @@ -1,6 +1,6 @@ ---- src/mpe2/sbin/mpeinstall.in.orig 2009-10-16 01:50:22.000000000 +0200 -+++ src/mpe2/sbin/mpeinstall.in 2014-08-20 22:43:03.000000000 +0200 -@@ -529,7 +529,7 @@ +--- src/mpe2/sbin/mpeinstall.in.orig 2012-04-30 22:12:21.000000000 +0200 ++++ src/mpe2/sbin/mpeinstall.in 2014-08-31 12:34:38.000000000 +0200 +@@ -531,7 +531,7 @@ # so $docdir (with NULL PACKAGE) is appended to dirlist for removal. savedPACKAGE=$PACKAGE PACKAGE="" @@ -9,7 +9,7 @@ PACKAGE=$savedPACKAGE fi -@@ -577,15 +577,15 @@ +@@ -579,15 +579,15 @@ # ie INSTALL $top_srcdir/doc $docdir # INSTALL $top_srcdir/man $mandir # INSTALL $top_srcdir/html $htmldir @@ -34,15 +34,7 @@ # Remove old uninstall file if [ "$appendUninstall" = 0 -a -f $UNINSTALLFILE ] ; then -@@ -632,7 +632,6 @@ - - if [ "$appendUninstall" = 0 ] ; then - echo "$RM -f $sbindir/mpeuninstall" >> $UNINSTALLFILE -- echo "$RM -f $UNINSTALLFILE" >> $UNINSTALLFILE - fi - - # Add the directory removes to the UNINSTALL file -@@ -643,8 +642,8 @@ +@@ -649,8 +649,8 @@ if [ "$appendUninstall" = 0 ] ; then cp $UNINSTALLFILE $sbinbuild_dir/mpeuninstall # Modified: head/net/mpich2/files/patch-src_openpa_Makefile.in ============================================================================== --- head/net/mpich2/files/patch-src_openpa_Makefile.in Mon Sep 1 21:42:59 2014 (r366963) +++ head/net/mpich2/files/patch-src_openpa_Makefile.in Mon Sep 1 21:50:14 2014 (r366964) @@ -1,7 +1,7 @@ ---- ./src/openpa/Makefile.in.orig 2010-02-22 23:22:28.000000000 +0100 -+++ ./src/openpa/Makefile.in 2010-03-10 21:36:17.000000000 +0100 -@@ -229,7 +229,7 @@ - EXTRA_DIST = COPYRIGHT CHANGELOG openpa.pc.in +--- ./src/openpa/Makefile.in.orig 2012-10-08 21:02:13.000000000 +0200 ++++ ./src/openpa/Makefile.in 2014-08-31 18:17:46.000000000 +0200 +@@ -316,7 +316,7 @@ + EXTRA_DIST = COPYRIGHT CHANGELOG openpa.pc.in VERSION # pkgconfig files -pkgconfigdir = $(libdir)/pkgconfig @@ -9,30 +9,3 @@ pkgconfig_DATA = openpa.pc all: all-recursive -@@ -272,16 +272,16 @@ - cd $(top_builddir) && $(SHELL) ./config.status $@ - install-dist_docDATA: $(dist_doc_DATA) - @$(NORMAL_INSTALL) -- test -z "$(docdir)" || $(MKDIR_P) "$(DESTDIR)$(docdir)" -- @list='$(dist_doc_DATA)'; test -n "$(docdir)" || list=; \ -- for p in $$list; do \ -- if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ -- echo "$$d$$p"; \ -- done | $(am__base_list) | \ -- while read files; do \ -- echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(docdir)'"; \ -- $(INSTALL_DATA) $$files "$(DESTDIR)$(docdir)" || exit $$?; \ -- done -+%%PORTDOCS%% test -z "$(docdir)" || $(MKDIR_P) "$(DESTDIR)$(docdir)" -+%%PORTDOCS%% @list='$(dist_doc_DATA)'; test -n "$(docdir)" || list=; \ -+%%PORTDOCS%% for p in $$list; do \ -+%%PORTDOCS%% if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ -+%%PORTDOCS%% echo "$$d$$p"; \ -+%%PORTDOCS%% done | $(am__base_list) | \ -+%%PORTDOCS%% while read files; do \ -+%%PORTDOCS%% echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(docdir)'"; \ -+%%PORTDOCS%% $(INSTALL_DATA) $$files "$(DESTDIR)$(docdir)" || exit $$?; \ -+%%PORTDOCS%% done - - uninstall-dist_docDATA: - @$(NORMAL_UNINSTALL) Modified: head/net/mpich2/pkg-plist ============================================================================== --- head/net/mpich2/pkg-plist Mon Sep 1 21:42:59 2014 (r366963) +++ head/net/mpich2/pkg-plist Mon Sep 1 21:50:14 2014 (r366964) @@ -89,6 +89,7 @@ bin/mpif90 %%PM_MPD%%bin/mpirun.py %%PM_MPD%%bin/mpirun.pyc %%PM_MPD%%bin/mpirun.pyo +bin/parkill %%JAVA%%bin/rlogTOslog2 %%JAVA%%bin/rlog_check_timeorder %%JAVA%%bin/rlog_print @@ -117,7 +118,6 @@ etc/mpicc.conf etc/mpicxx.conf etc/mpif77.conf etc/mpif90.conf -etc/mpixxx_opts.conf include/clog_commset.h include/clog_const.h include/clog_inttypes.h @@ -139,7 +139,6 @@ include/mpicxx.h include/mpif.h include/mpio.h include/mpiof.h -include/mpix.h include/opa_config.h include/opa_primitives.h include/opa_queue.h @@ -168,6 +167,7 @@ include/primitives/opa_unsafe.h %%JAVA%%lib/jumpshot_launcher.jar lib/libampe.a lib/libfmpich.a +lib/libfmpich.la lib/libfmpich.so lib/libfmpich.so.%%VER%% lib/libfmpich.so.%%VERM%% @@ -179,14 +179,17 @@ lib/libmpe_nompi.a lib/libmpe_nompi_null.a lib/libmpe_null.a lib/libmpich.a +lib/libmpich.la lib/libmpich.so lib/libmpich.so.%%VERM%% lib/libmpich.so.%%VER%% lib/libmpichcxx.a +lib/libmpichcxx.la lib/libmpichcxx.so lib/libmpichcxx.so.%%VERM%% lib/libmpichcxx.so.%%VER%% lib/libmpichf90.a +lib/libmpichf90.la lib/libmpichf90.so lib/libmpichf90.so.%%VERM%% lib/libmpichf90.so.%%VER%% @@ -194,7 +197,7 @@ lib/libmpl.a lib/libmpl.la lib/libmpl.so lib/libmpl.so.1 -lib/libmpl.so.1.1.0 +lib/libmpl.so.1.0.0 lib/libopa.a lib/libopa.la lib/libopa.so @@ -212,18 +215,99 @@ lib/mpe_prof.o %%JAVA%%lib/trace_rlog/libTraceInput.la %%JAVA%%lib/trace_rlog/libTraceInput.so %%JAVA%%lib/traceprint.jar -libdata/pkgconfig/mpich2-c.pc -libdata/pkgconfig/mpich2-cxx.pc -libdata/pkgconfig/mpich2-f77.pc -libdata/pkgconfig/mpich2-f90.pc +libdata/pkgconfig/mpich2.pc libdata/pkgconfig/openpa.pc -%%PORTDOCS%%man/man1/MPI.1.gz %%PORTDOCS%%man/man1/mpicc.1.gz %%PORTDOCS%%man/man1/mpicxx.1.gz %%PORTDOCS%%man/man1/mpiexec.1.gz %%PORTDOCS%%man/man1/mpif77.1.gz %%PORTDOCS%%man/man1/mpif90.1.gz -%%PORTDOCS%%man/man3/MPIX_Group_comm_create.3.gz +%%PORTDOCS%%man/man3/MPIX_Comm_create_group.3.gz +%%PORTDOCS%%man/man3/MPIX_Comm_group_failed.3.gz +%%PORTDOCS%%man/man3/MPIX_Comm_idup.3.gz +%%PORTDOCS%%man/man3/MPIX_Comm_reenable_anysource.3.gz +%%PORTDOCS%%man/man3/MPIX_Comm_remote_group_failed.3.gz +%%PORTDOCS%%man/man3/MPIX_Comm_split_type.3.gz +%%PORTDOCS%%man/man3/MPIX_Compare_and_swap.3.gz +%%PORTDOCS%%man/man3/MPIX_Fetch_and_op.3.gz +%%PORTDOCS%%man/man3/MPIX_Get_accumulate.3.gz +%%PORTDOCS%%man/man3/MPIX_Iallgather.3.gz +%%PORTDOCS%%man/man3/MPIX_Iallgatherv.3.gz +%%PORTDOCS%%man/man3/MPIX_Iallreduce.3.gz +%%PORTDOCS%%man/man3/MPIX_Ialltoall.3.gz +%%PORTDOCS%%man/man3/MPIX_Ialltoallv.3.gz +%%PORTDOCS%%man/man3/MPIX_Ialltoallw.3.gz +%%PORTDOCS%%man/man3/MPIX_Ibarrier.3.gz +%%PORTDOCS%%man/man3/MPIX_Ibcast.3.gz +%%PORTDOCS%%man/man3/MPIX_Iexscan.3.gz +%%PORTDOCS%%man/man3/MPIX_Igather.3.gz +%%PORTDOCS%%man/man3/MPIX_Igatherv.3.gz +%%PORTDOCS%%man/man3/MPIX_Improbe.3.gz +%%PORTDOCS%%man/man3/MPIX_Imrecv.3.gz +%%PORTDOCS%%man/man3/MPIX_Ineighbor_allgather.3.gz +%%PORTDOCS%%man/man3/MPIX_Ineighbor_allgatherv.3.gz +%%PORTDOCS%%man/man3/MPIX_Ineighbor_alltoall.3.gz +%%PORTDOCS%%man/man3/MPIX_Ineighbor_alltoallv.3.gz +%%PORTDOCS%%man/man3/MPIX_Ineighbor_alltoallw.3.gz +%%PORTDOCS%%man/man3/MPIX_Ireduce.3.gz +%%PORTDOCS%%man/man3/MPIX_Ireduce_scatter.3.gz +%%PORTDOCS%%man/man3/MPIX_Ireduce_scatter_block.3.gz +%%PORTDOCS%%man/man3/MPIX_Iscan.3.gz +%%PORTDOCS%%man/man3/MPIX_Iscatter.3.gz +%%PORTDOCS%%man/man3/MPIX_Iscatterv.3.gz +%%PORTDOCS%%man/man3/MPIX_Mprobe.3.gz +%%PORTDOCS%%man/man3/MPIX_Mrecv.3.gz +%%PORTDOCS%%man/man3/MPIX_Neighbor_allgather.3.gz +%%PORTDOCS%%man/man3/MPIX_Neighbor_allgatherv.3.gz +%%PORTDOCS%%man/man3/MPIX_Neighbor_alltoall.3.gz +%%PORTDOCS%%man/man3/MPIX_Neighbor_alltoallv.3.gz +%%PORTDOCS%%man/man3/MPIX_Neighbor_alltoallw.3.gz +%%PORTDOCS%%man/man3/MPIX_Raccumulate.3.gz +%%PORTDOCS%%man/man3/MPIX_Rget.3.gz +%%PORTDOCS%%man/man3/MPIX_Rget_accumulate.3.gz +%%PORTDOCS%%man/man3/MPIX_Rput.3.gz +%%PORTDOCS%%man/man3/MPIX_T_category_changed.3.gz +%%PORTDOCS%%man/man3/MPIX_T_category_get_categories.3.gz +%%PORTDOCS%%man/man3/MPIX_T_category_get_cvars.3.gz +%%PORTDOCS%%man/man3/MPIX_T_category_get_info.3.gz +%%PORTDOCS%%man/man3/MPIX_T_category_get_num.3.gz +%%PORTDOCS%%man/man3/MPIX_T_category_get_pvars.3.gz +%%PORTDOCS%%man/man3/MPIX_T_cvar_get_info.3.gz +%%PORTDOCS%%man/man3/MPIX_T_cvar_get_num.3.gz +%%PORTDOCS%%man/man3/MPIX_T_cvar_handle_alloc.3.gz +%%PORTDOCS%%man/man3/MPIX_T_cvar_handle_free.3.gz +%%PORTDOCS%%man/man3/MPIX_T_cvar_read.3.gz +%%PORTDOCS%%man/man3/MPIX_T_cvar_write.3.gz +%%PORTDOCS%%man/man3/MPIX_T_enum_get_info.3.gz +%%PORTDOCS%%man/man3/MPIX_T_enum_get_item.3.gz +%%PORTDOCS%%man/man3/MPIX_T_finalize.3.gz +%%PORTDOCS%%man/man3/MPIX_T_init_thread.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_get_info.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_get_num.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_handle_alloc.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_handle_free.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_read.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_readreset.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_reset.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_session_create.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_session_free.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_start.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_stop.3.gz +%%PORTDOCS%%man/man3/MPIX_T_pvar_write.3.gz 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-%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_call_errhandler.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_complete.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_create.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_create_errhandler.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_create_keyval.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_delete_attr.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_fence.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_free.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_free_keyval.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_attr.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_errhandler.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_group.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_get_name.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_lock.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_post.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_set_attr.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_set_errhandler.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_set_name.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_start.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_test.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_unlock.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Win_wait.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Wtick.html -%%PORTDOCS%%%%DOCSDIR%%/www3/MPI_Wtime.html -%%PORTDOCS%%%%DOCSDIR%%/www3/index.htm %%PORTDOCS%%%%DOCSDIR%%/www4/MPE_Add_RGB_color.html %%PORTDOCS%%%%DOCSDIR%%/www4/MPE_CaptureFile.html %%PORTDOCS%%%%DOCSDIR%%/www4/MPE_Close_graphics.html @@ -1082,53 +864,52 @@ sbin/mpeuninstall %%PORTDOCS%%%%DOCSDIR%%/www4/MPE_TagsEnd.html %%PORTDOCS%%%%DOCSDIR%%/www4/MPE_Update.html %%PORTDOCS%%%%DOCSDIR%%/www4/libmpe.cit -%%DATADIR%%/examples_collchk/Makefile -%%DATADIR%%/examples_collchk/composite.c -%%DATADIR%%/examples_collchk/scatterv.c -%%DATADIR%%/examples_collchk/time_allreduce.c -%%DATADIR%%/examples_collchk/time_alltoallv.c -%%DATADIR%%/examples_collchk/time_alltoallv0.c -%%DATADIR%%/examples_collchk/time_bcast.c -%%DATADIR%%/examples_collchk/wrong_composite.c -%%DATADIR%%/examples_collchk/wrong_int_byte.c -%%DATADIR%%/examples_collchk/wrong_reals.f -%%DATADIR%%/examples_collchk/wrong_root.c -%%DATADIR%%/examples_collchk/wrong_scatterv.c -%%DATADIR%%/examples_graphics/Makefile -%%DATADIR%%/examples_graphics/cpi.c -%%DATADIR%%/examples_graphics/cxgraphics.c -%%DATADIR%%/examples_graphics/fxgraphics.f -%%DATADIR%%/examples_logging/Makefile -%%DATADIR%%/examples_logging/comm1_isr.c -%%DATADIR%%/examples_logging/comm1_isr_loop.c -%%DATADIR%%/examples_logging/comm2_connect_accept.c -%%DATADIR%%/examples_logging/comm2_spawn_child.c -%%DATADIR%%/examples_logging/comm2_spawn_parent.c -%%DATADIR%%/examples_logging/cpi.c -%%DATADIR%%/examples_logging/cpilog.c -%%DATADIR%%/examples_logging/cpilog_pack.c -%%DATADIR%%/examples_logging/fcomm1_isr.f -%%DATADIR%%/examples_logging/fpilog.f -%%DATADIR%%/examples_logging/fpilog_pack.F -%%DATADIR%%/examples_logging/iotest.c -%%DATADIR%%/examples_logging/log_cost.c -%%DATADIR%%/examples_logging/openmp_mpilog.F -%%DATADIR%%/examples_logging/openmp_sendrecv.c -%%DATADIR%%/examples_logging/pthread_allreduce.c -%%DATADIR%%/examples_logging/pthread_sendrecv.c -%%DATADIR%%/examples_logging/pthread_sendrecv_user.c -%%DATADIR%%/examples_logging/srtest.c -%%X11%%%%DATADIR%%/logfiles/barrier.rlog -%%X11%%%%DATADIR%%/logfiles/fpilog.clog -%%X11%%%%DATADIR%%/logfiles/fpilog.slog2 -%%JAVA%%@dirrm %%DATADIR%%/logfiles -@dirrm %%DATADIR%%/examples_logging -@dirrm %%DATADIR%%/examples_graphics -@dirrm %%DATADIR%%/examples_collchk +%%DATADIR%%/examples/collchk/Makefile +%%DATADIR%%/examples/collchk/composite.c +%%DATADIR%%/examples/collchk/scatterv.c +%%DATADIR%%/examples/collchk/time_allreduce.c +%%DATADIR%%/examples/collchk/time_alltoallv.c +%%DATADIR%%/examples/collchk/time_alltoallv0.c +%%DATADIR%%/examples/collchk/time_bcast.c +%%DATADIR%%/examples/collchk/wrong_composite.c +%%DATADIR%%/examples/collchk/wrong_int_byte.c +%%DATADIR%%/examples/collchk/wrong_reals.f +%%DATADIR%%/examples/collchk/wrong_root.c +%%DATADIR%%/examples/collchk/wrong_scatterv.c +%%DATADIR%%/examples/graphics/Makefile +%%DATADIR%%/examples/graphics/cpi.c +%%DATADIR%%/examples/graphics/cxgraphics.c +%%DATADIR%%/examples/graphics/fxgraphics.f +%%DATADIR%%/examples/logfiles/barrier.rlog +%%DATADIR%%/examples/logfiles/fpilog.clog +%%DATADIR%%/examples/logfiles/fpilog.slog2 +%%DATADIR%%/examples/logging/Makefile +%%DATADIR%%/examples/logging/comm1_isr.c +%%DATADIR%%/examples/logging/comm1_isr_loop.c +%%DATADIR%%/examples/logging/comm2_connect_accept.c +%%DATADIR%%/examples/logging/comm2_spawn_child.c +%%DATADIR%%/examples/logging/comm2_spawn_parent.c +%%DATADIR%%/examples/logging/cpi.c +%%DATADIR%%/examples/logging/cpilog.c +%%DATADIR%%/examples/logging/cpilog_pack.c +%%DATADIR%%/examples/logging/fcomm1_isr.f +%%DATADIR%%/examples/logging/fpilog.f +%%DATADIR%%/examples/logging/fpilog_pack.F +%%DATADIR%%/examples/logging/iotest.c +%%DATADIR%%/examples/logging/log_cost.c +%%DATADIR%%/examples/logging/openmp_mpilog.F +%%DATADIR%%/examples/logging/openmp_sendrecv.c +%%DATADIR%%/examples/logging/pthread_allreduce.c +%%DATADIR%%/examples/logging/pthread_sendrecv.c +%%DATADIR%%/examples/logging/pthread_sendrecv_user.c +%%DATADIR%%/examples/logging/srtest.c +@dirrm %%DATADIR%%/examples/logfiles +@dirrm %%DATADIR%%/examples/logging +@dirrm %%DATADIR%%/examples/graphics +@dirrm %%DATADIR%%/examples/collchk +@dirrm %%DATADIR%%/examples @dirrm %%DATADIR%% %%PORTDOCS%%@dirrm %%DOCSDIR%%/www4 -%%PORTDOCS%%@dirrm %%DOCSDIR%%/www3 -%%PORTDOCS%%@dirrm %%DOCSDIR%%/www1 %%JAVA%%%%PORTDOCS%%@dirrm %%DOCSDIR%%/jumpshot-4/html %%JAVA%%%%PORTDOCS%%@dirrm %%DOCSDIR%%/jumpshot-4 %%PORTDOCS%%@dirrm %%DOCSDIR%% Modified: head/science/fvm/Makefile ============================================================================== --- head/science/fvm/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/science/fvm/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= fvm PORTVERSION= 0.15.3 -PORTREVISION= 10 +PORTREVISION= 11 CATEGORIES= science parallel MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/ DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g} @@ -41,6 +41,8 @@ CONFIGURE_ARGS+= --with-mpi=${LOCALBASE} BUILD_DEPENDS+= ${LOCALBASE}/bin/mpicc:${PORTSDIR}/net/mpich2 RUN_DEPENDS+= ${LOCALBASE}/bin/mpirun:${PORTSDIR}/net/mpich2 CONFIGURE_ARGS+= --with-mpi=${LOCALBASE} +# Do not directly depend on Fortran, but FFLAGS needed to link with mpich2 +USES+= fortran .endif .if defined(WITH_DEBUG) Modified: head/science/gromacs/Makefile ============================================================================== --- head/science/gromacs/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/science/gromacs/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= gromacs PORTVERSION= 5.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ Modified: head/science/ncs/Makefile ============================================================================== --- head/science/ncs/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/science/ncs/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= ncs PORTVERSION= 2.0.4 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= science parallel MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/ DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g} Modified: head/science/pnetcdf/Makefile ============================================================================== --- head/science/pnetcdf/Makefile Mon Sep 1 21:42:59 2014 (r366963) +++ head/science/pnetcdf/Makefile Mon Sep 1 21:50:14 2014 (r366964) @@ -3,7 +3,7 @@ PORTNAME= pnetcdf PORTVERSION= 1.5.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science parallel MASTER_SITES= http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \ LOCAL/sunpoet
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