Date: Tue, 21 Jun 2022 18:08:33 GMT From: Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 36f5f5636bfc - main - devel/py-pyina: Remove accidentally-added files Message-ID: <202206211808.25LI8Xu4084001@gitrepo.freebsd.org>
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The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=36f5f5636bfc357c48e1d278fb8f76de3cc5c89c commit 36f5f5636bfc357c48e1d278fb8f76de3cc5c89c Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org> AuthorDate: 2022-06-21 18:08:24 +0000 Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org> CommitDate: 2022-06-21 18:08:24 +0000 devel/py-pyina: Remove accidentally-added files --- devel/py-pyina/1l | 35 ----- devel/py-pyina/1q | 5 - devel/py-pyina/1s | 397 ------------------------------------------------------ devel/py-pyina/1t | 4 - 4 files changed, 441 deletions(-) diff --git a/devel/py-pyina/1l b/devel/py-pyina/1l deleted file mode 100644 index 5a80dd78c125..000000000000 --- a/devel/py-pyina/1l +++ /dev/null @@ -1,35 +0,0 @@ -Copyright (c) 2004-2016 California Institute of Technology. -Copyright (c) 2016-2021 The Uncertainty Quantification Foundation. -All rights reserved. - -This software is available subject to the conditions and terms laid -out below. By downloading and using this software you are agreeing -to the following conditions. - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions -are met:: - - - Redistribution of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - - Redistribution in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentations and/or other materials provided with the distribution. - - - Neither the names of the copyright holders nor the names of any of - the contributors may be used to endorse or promote products derived - from this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS -"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED -TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR -PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR -CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, -EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; -OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, -WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR -OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - diff --git a/devel/py-pyina/1q b/devel/py-pyina/1q deleted file mode 100644 index 9eefd6db79ea..000000000000 --- a/devel/py-pyina/1q +++ /dev/null @@ -1,5 +0,0 @@ -numpy<1.20.0,>=1.0 -mpi4py!=3.0.2,>=1.3 -dill>=0.3.4 -pox>=0.3.0 -pathos>=0.2.8 diff --git a/devel/py-pyina/1s b/devel/py-pyina/1s deleted file mode 100644 index e21226f4643d..000000000000 --- a/devel/py-pyina/1s +++ /dev/null @@ -1,397 +0,0 @@ -#!/usr/bin/env python -# -# Author: Mike McKerns (mmckerns @caltech and @uqfoundation) -# Copyright (c) 1997-2016 California Institute of Technology. -# Copyright (c) 2016-2021 The Uncertainty Quantification Foundation. -# License: 3-clause BSD. The full license text is available at: -# - https://github.com/uqfoundation/pyina/blob/master/LICENSE - -import os -import sys -# drop support for older python -unsupported = None -if sys.version_info < (2, 7): - unsupported = 'Versions of Python before 2.7 are not supported' -elif (3, 0) <= sys.version_info < (3, 6): - unsupported = 'Versions of Python before 3.6 are not supported' -if unsupported: - raise ValueError(unsupported) - -# set version numbers -stable_version = '0.2.5' -target_version = '0.2.5' -is_release = stable_version == target_version - -# check if easy_install is available -try: -# import __force_distutils__ #XXX: uncomment to force use of distutills - from setuptools import setup, dist - has_setuptools = True -except ImportError: - from distutils.core import setup - has_setuptools = False - -# generate version number -if os.path.exists('pyina/info.py'): - # is a source distribution, so use existing version - os.chdir('pyina') - with open('info.py','r') as f: - f.readline() # header - this_version = f.readline().split()[-1].strip("'") - os.chdir('..') -elif stable_version == target_version: - # we are building a stable release - this_version = target_version -else: - # we are building a distribution - this_version = target_version + '.dev0' - if is_release: - from datetime import date - today = "".join(date.isoformat(date.today()).split('-')) - this_version += "-" + today - -# get the license info -with open('LICENSE') as file: - license_text = file.read() - -# generate the readme text -long_description = \ -"""---------------------------------------------- -pyina: MPI parallel map and cluster scheduling ----------------------------------------------- - -About Pyina -=========== - -The ``pyina`` package provides several basic tools to make MPI-based -parallel computing more accessable to the end user. The goal -of ``pyina`` is to allow the user to extend their own code to MPI-based -parallel computing with minimal refactoring. - -The central element of ``pyina`` is the parallel map algorithm. -``pyina`` currently provides two strategies for executing the parallel-map, -where a strategy is the algorithm for distributing the work list of -jobs across the availble nodes. These strategies can be used *"in-the-raw"* -(i.e. directly) to provide the map algorithm to a user's own mpi-aware code. -Further, in ``pyina.mpi`` ``pyina`` provides pipe and map implementations -(known as *"easy map"*) that hide the MPI internals from the user. With the -*"easy map"*, the user can launch their code in parallel batch mode -- using -standard python and without ever having to write a line of MPI code. - -There are several ways that a user would typically launch their code in -parallel -- directly with ``mpirun`` or ``mpiexec``, or through the use of a -scheduler such as *torque* or *slurm*. ``pyina`` encapsulates several of these -*"launchers"*, and provides a common interface to the different methods of -launching a MPI job. - -``pyina`` is part of ``pathos``, a python framework for heterogeneous computing. -``pyina`` is in active development, so any user feedback, bug reports, comments, -or suggestions are highly appreciated. A list of issues is located at https://github.com/uqfoundation/pyina/issues, with a legacy list maintained at https://uqfoundation.github.io/project/pathos/query. - - -Major Features -============== - -``pyina`` provides a highly configurable parallel map interface -to running MPI jobs, with: - - - a map interface that extends the python ``map`` standard - - the ability to submit batch jobs to a selection of schedulers - - the ability to customize node and process launch configurations - - the ability to launch parallel MPI jobs with standard python - - ease in selecting different strategies for processing a work list - - -Current Release -=============== - -This documentation is for version ``pyina-%(thisver)s``. - -The latest released version of ``pyina`` is available at: - - https://pypi.org/project/pyina - -``pyina`` is distributed under a 3-clause BSD license. - - >>> import pyina - >>> pyina.license() - - -Development Version -=================== - -You can get the latest development version with all the shiny new features at: - - https://github.com/uqfoundation - -If you have a new contribution, please submit a pull request. - - -Installation -============ - -``pyina`` is packaged to install from source, so you must -download the tarball, unzip, and run the installer:: - - [download] - $ tar -xvzf pyina-%(relver)s.tar.gz - $ cd pyina-%(relver)s - $ python setup py build - $ python setup py install - -You will be warned of any missing dependencies and/or settings after -you run the "build" step above. ``pyina`` depends on ``dill``, ``pox``, ``pathos``, and -``mpi4py``, so you should install them first. A version of MPI must also be -installed. Launchers in ``pyina`` that submit to a scheduler will throw errors -if the underlying scheduler is not available, however a scheduler is not -required for ``pyina`` to execute. - -Alternately, ``pyina`` can be installed with ``pip`` or ``easy_install``:: - - $ pip install pyina - - -Requirements -============ - -``pyina`` requires: - - - ``python``, **version == 2.7** or **version >= 3.6**, or ``pypy`` - - ``numpy``, **version >= 1.0** - - ``mpi4py``, **version >= 1.3** - - ``dill``, **version >= 0.3.4** - - ``pox``, **version >= 0.3.0** - - ``pathos``, **version >= 0.2.8** - -Optional requirements: - - - ``setuptools``, **version >= 0.6** - - ``mystic``, **version >= 0.3.7** - - -More Information -================ - -Probably the best way to get started is to look at the documentation at -http://pyina.rtfd.io. Also see ``pyina.examples`` and ``pyina.tests`` -for a set of scripts that demonstrate the configuration and launching of -mpi-based parallel jobs using the *"easy map"* interface. Also see -``pyina.examples_other`` for a set of scripts that test the more raw -internals of ``pyina``. You can run the tests with ``python -m pyina.tests``. -A script is included for querying, setting up, and tearing down an MPI -environment, see ``python -m pyina`` for more information. The source code -is generally well documented, so further questions may be resolved by -inspecting the code itself. Please feel free to submit a ticket on github, -or ask a question on stackoverflow (**@Mike McKerns**). -If you would like to share how you use ``pyina`` in your work, please send -an email (to **mmckerns at uqfoundation dot org**). - -Important classes and functions are found here: - - - ``pyina.mpi`` [the map API definition] - - ``pyina.schedulers`` [all available schedulers] - - ``pyina.launchers`` [all available launchers] - -Mapping strategies are found here: - - - ``pyina.mpi_scatter`` [the scatter-gather strategy] - - ``pyina.mpi_pool`` [the worker pool strategy] - -``pyina`` also provides a convience script that helps navigate the -MPI environment. This script can be run from anywhere with:: - - $ mpi_world - -If may also be convienent to set a shell alias for the launch of 'raw' -mpi-python jobs. Set something like the following (for bash):: - - $ alias mpython1='mpiexec -np 1 `which python`' - $ alias mpython2='mpiexec -np 2 `which python`' - $ ... - - -Citation -======== - -If you use ``pyina`` to do research that leads to publication, we ask that you -acknowledge use of ``pyina`` by citing the following in your publication:: - - M.M. McKerns, L. Strand, T. Sullivan, A. Fang, M.A.G. Aivazis, - "Building a framework for predictive science", Proceedings of - the 10th Python in Science Conference, 2011; - http://arxiv.org/pdf/1202.1056 - - Michael McKerns and Michael Aivazis, - "pathos: a framework for heterogeneous computing", 2010- ; - https://uqfoundation.github.io/project/pathos - -Please see https://uqfoundation.github.io/project/pathos or -http://arxiv.org/pdf/1202.1056 for further information. - -""" % {'relver' : stable_version, 'thisver' : this_version} - -# write readme file -with open('README', 'w') as file: - file.write(long_description) - -# generate 'info' file contents -def write_info_py(filename='pyina/info.py'): - contents = """# THIS FILE GENERATED FROM SETUP.PY -this_version = '%(this_version)s' -stable_version = '%(stable_version)s' -readme = '''%(long_description)s''' -license = '''%(license_text)s''' -""" - with open(filename, 'w') as file: - file.write(contents % {'this_version' : this_version, - 'stable_version' : stable_version, - 'long_description' : long_description, - 'license_text' : license_text }) - return - -# write info file -write_info_py() - -# platform-specific instructions -sdkroot_set = False -from sys import platform -if platform[:3] == 'win': - pass -else: #platform = linux or mac - if platform[:6] == 'darwin': - # mpi4py has difficulty building on a Mac - # see special installation instructions here: - # http://mpi4py.scipy.org/docs/usrman/install.html - import os - try: - sdkroot = os.environ['SDKROOT'] - except KeyError: - sdkroot = '/' - os.environ['SDKROOT'] = sdkroot - sdkroot_set = True - pass - pass - -# build the 'setup' call -setup_code = """ -setup(name="pyina", - version='%s', - description="MPI parallel map and cluster scheduling", - long_description = '''%s''', - author = 'Mike McKerns', - maintainer = 'Mike McKerns', - license = '3-clause BSD', - platforms = ['Linux', 'Mac'], - url = 'https://github.com/uqfoundation/pyina', - download_url = 'https://github.com/uqfoundation/pyina/archive/master.zip', - classifiers = ['Development Status :: 5 - Production/Stable', - 'Intended Audience :: Developers', - 'Intended Audience :: Science/Research', - 'License :: OSI Approved :: BSD License', - 'Programming Language :: Python :: 2', - 'Programming Language :: Python :: 2.7', - 'Programming Language :: Python :: 3', - 'Programming Language :: Python :: 3.6', - 'Programming Language :: Python :: 3.7', - 'Programming Language :: Python :: 3.8', - 'Programming Language :: Python :: 3.9', - 'Topic :: Scientific/Engineering', - 'Topic :: Software Development'], - - packages=['pyina','pyina.tests'], - package_dir={'pyina':'pyina','pyina.tests':'tests'}, -""" % (target_version, long_description) - -# add dependencies -from sys import version_info -sysversion = version_info[:2] -try: - import ctypes # if using `pypy`, pythonapi is not found - IS_PYPY = not hasattr(ctypes, 'pythonapi') - IS_PYPY2 = IS_PYPY and sysversion < (3,0) -except: - IS_PYPY = False - IS_PYPY2 = False -if sysversion < (2,6) or sysversion == (3,0) or sysversion == (3,1): - numpy_version = '>=1.0, <1.8.0' -elif sysversion == (2,6) or sysversion == (3,2) or sysversion == (3,3): - numpy_version = '>=1.0, <1.12.0' -elif IS_PYPY2: - numpy_version = '>=1.0, <1.16.0' -elif sysversion == (2,7) or sysversion == (3,4): - numpy_version = '>=1.0, <1.17.0' -elif sysversion == (3,5): - numpy_version = '>=1.0, <1.19.0' -elif sysversion == (3,6):# or IS_PYPY - numpy_version = '>=1.0, <1.20.0' -else: - numpy_version = '>=1.0' -dill_version = '>=0.3.4' -pox_version = '>=0.3.0' -pathos_version = '>=0.2.8' -mpi4py_version = '>=1.3, !=3.0.2' # segfault 11 on MPI import -pypar_version = '>=2.1.4' -mystic_version = '>=0.3.7' -# rtd fails for mpi4py, mock it instead -on_rtd = os.environ.get('READTHEDOCS', None) == 'True' -if has_setuptools: - if on_rtd: - setup_code += """ - zip_safe = False, - install_requires = ('numpy%s', 'dill%s', 'pox%s', 'pathos%s'), -""" % (numpy_version, dill_version, pox_version, pathos_version) - else: - setup_code += """ - zip_safe = False, - install_requires = ('numpy%s', 'mpi4py%s', 'dill%s', 'pox%s', 'pathos%s'), -""" % (numpy_version, mpi4py_version, dill_version, pox_version, pathos_version) - -# add the scripts, and close 'setup' call -setup_code += """ - scripts=['scripts/ezpool','scripts/ezscatter','scripts/mpi_world']) -""" - -# exec the 'setup' code -exec(setup_code) - -# if dependencies are missing, print a warning -try: - import numpy - import dill - import pox - import pathos - import mpi4py #XXX: throws an error even though ok? - #import pypar -except ImportError: - print("\n***********************************************************") - print("WARNING: One of the following dependencies may be unresolved:") - print((" numpy %s" % numpy_version)) - print((" dill %s" % dill_version)) - print((" pox %s" % pox_version)) - print((" pathos %s" % pathos_version)) - print((" mpi4py %s" % mpi4py_version)) -# print(" pypar %s (optional)" % pypar_version) - print("***********************************************************\n") - -if sdkroot_set: - print("\n***********************************************************") - print("WARNING: One of following variables was set to a default:") - print((" SDKROOT %s" % sdkroot)) - print("***********************************************************\n") -else: - pass - -try: - import mpi4py -except ImportError: - print(""" -You may need to set the environment variable "SDKROOT", -as shown in the instructions for installing ``mpi4py``: - http://mpi4py.scipy.org/docs/usrman/install.html -""") - - -if __name__=='__main__': - pass - -# End of file diff --git a/devel/py-pyina/1t b/devel/py-pyina/1t deleted file mode 100644 index 8bfd5a12f85b..000000000000 --- a/devel/py-pyina/1t +++ /dev/null @@ -1,4 +0,0 @@ -[egg_info] -tag_build = -tag_date = 0 -
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