From owner-svn-ports-head@freebsd.org Fri Nov 11 06:19:11 2016 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id E57D5C3B700; Fri, 11 Nov 2016 06:19:11 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 97EB81A97; Fri, 11 Nov 2016 06:19:11 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id uAB6JArk058839; Fri, 11 Nov 2016 06:19:10 GMT (envelope-from pi@FreeBSD.org) Received: (from pi@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id uAB6JAH3058837; Fri, 11 Nov 2016 06:19:10 GMT (envelope-from pi@FreeBSD.org) Message-Id: <201611110619.uAB6JAH3058837@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: pi set sender to pi@FreeBSD.org using -f From: Kurt Jaeger Date: Fri, 11 Nov 2016 06:19:10 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r425863 - in head/biology/seqtools: . files X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 11 Nov 2016 06:19:12 -0000 Author: pi Date: Fri Nov 11 06:19:10 2016 New Revision: 425863 URL: https://svnweb.freebsd.org/changeset/ports/425863 Log: biology/seqtools: update 4.43.0 -> 4.44.1 - Blixem: Features can now be added to multiple different groups/filters. - Belvu: Fix a problem where column highlighting can get out of sync with the text. Added: head/biology/seqtools/files/ head/biology/seqtools/files/patch-gbtools_src_blatSrc_lib_gff3.c (contents, props changed) Modified: head/biology/seqtools/Makefile head/biology/seqtools/distinfo Modified: head/biology/seqtools/Makefile ============================================================================== --- head/biology/seqtools/Makefile Fri Nov 11 06:09:12 2016 (r425862) +++ head/biology/seqtools/Makefile Fri Nov 11 06:19:10 2016 (r425863) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= seqtools -PORTVERSION= 4.43.0 +PORTVERSION= 4.44.1 CATEGORIES= biology MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/ Modified: head/biology/seqtools/distinfo ============================================================================== --- head/biology/seqtools/distinfo Fri Nov 11 06:09:12 2016 (r425862) +++ head/biology/seqtools/distinfo Fri Nov 11 06:19:10 2016 (r425863) @@ -1,3 +1,3 @@ -TIMESTAMP = 1469510431 -SHA256 (seqtools-4.43.0.tar.gz) = 01861098451eab001d49a039e60ddc6df22a61a7472924c850942ffdae396c8b -SIZE (seqtools-4.43.0.tar.gz) = 6862548 +TIMESTAMP = 1478810582 +SHA256 (seqtools-4.44.1.tar.gz) = 0e1dd7087d1180e434f0ea1aac21b8dfb5261195581ec3ba012abf0d1e39daa9 +SIZE (seqtools-4.44.1.tar.gz) = 6922888 Added: head/biology/seqtools/files/patch-gbtools_src_blatSrc_lib_gff3.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/seqtools/files/patch-gbtools_src_blatSrc_lib_gff3.c Fri Nov 11 06:19:10 2016 (r425863) @@ -0,0 +1,10 @@ +--- gbtools/src/blatSrc/lib/gff3.c.orig 2016-11-10 21:14:27 UTC ++++ gbtools/src/blatSrc/lib/gff3.c +@@ -7,6 +7,7 @@ + /* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #include "common.h" ++#include "dnaseq.h" + #include "gff3.h" + #include + #include "errAbort.h"