Date: Tue, 14 Apr 2020 12:13:55 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r531674 - in head/biology/py-macs2: . files Message-ID: <202004141213.03ECDtg9027938@repo.freebsd.org>
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Author: jwb Date: Tue Apr 14 12:13:55 2020 New Revision: 531674 URL: https://svnweb.freebsd.org/changeset/ports/531674 Log: biology/py-macs2: Upgrade to 2.2.7.1 Bug fix release Reported by: portscout Added: head/biology/py-macs2/files/ head/biology/py-macs2/files/patch-setup.py (contents, props changed) Modified: head/biology/py-macs2/Makefile head/biology/py-macs2/distinfo Modified: head/biology/py-macs2/Makefile ============================================================================== --- head/biology/py-macs2/Makefile Tue Apr 14 11:50:20 2020 (r531673) +++ head/biology/py-macs2/Makefile Tue Apr 14 12:13:55 2020 (r531674) @@ -2,8 +2,7 @@ PORTNAME= macs2 DISTVERSIONPREFIX= v -DISTVERSION= 2.2.6 -PORTREVISION= 1 +DISTVERSION= 2.2.7.1 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} Modified: head/biology/py-macs2/distinfo ============================================================================== --- head/biology/py-macs2/distinfo Tue Apr 14 11:50:20 2020 (r531673) +++ head/biology/py-macs2/distinfo Tue Apr 14 12:13:55 2020 (r531674) @@ -1,3 +1,3 @@ -TIMESTAMP = 1578626999 -SHA256 (taoliu-MACS-v2.2.6_GH0.tar.gz) = 7c51561787d15d85370b11c9121e4ab7174ce11cfde36043b9ee95de8451db3a -SIZE (taoliu-MACS-v2.2.6_GH0.tar.gz) = 133721230 +TIMESTAMP = 1586702732 +SHA256 (taoliu-MACS-v2.2.7.1_GH0.tar.gz) = 8ba25c367b84e237487b01be947239bee80e3ba123afc5e6034c374413b32913 +SIZE (taoliu-MACS-v2.2.7.1_GH0.tar.gz) = 134872405 Added: head/biology/py-macs2/files/patch-setup.py ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-macs2/files/patch-setup.py Tue Apr 14 12:13:55 2020 (r531674) @@ -0,0 +1,25 @@ +--- setup.py.orig 2020-04-12 14:46:03 UTC ++++ setup.py +@@ -26,22 +26,6 @@ def main(): + + cwd = os.path.abspath(os.path.dirname(__file__)) + +- # install required numpy +- p = subprocess.call([sys.executable, "-m", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd) +- if p != 0: +- # Could be due to a too old pip version and build isolation, check that +- try: +- # Note, pip may not be installed or not have been used +- import pip +- if LooseVersion(pip.__version__) < LooseVersion('18.0.0'): +- raise RuntimeError("Installing requirements failed. Possibly due " +- "to `pip` being too old, found version {}, " +- "needed is >= 18.0.0.".format(pip.__version__)) +- else: +- raise RuntimeError("Installing requirements failed!") +- except ImportError: +- raise RuntimeError("Installing requirement failed! `pip` has to be installed!") +- + from numpy import get_include as numpy_get_include + numpy_include_dir = [numpy_get_include()] +
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