From nobody Wed Apr 17 03:48:52 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4VK6Mm4V3Nz5HkS0; Wed, 17 Apr 2024 03:48:52 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4VK6Mm2KV7z4Xxs; Wed, 17 Apr 2024 03:48:52 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713325732; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=S89xR1sQRxaMZUnq5KIGjShxzWvIqTXfeW5WQt80LLs=; b=cIQYM+qMTFtR/c/ENZ8bQ+/tIgQ64y0xgAFC0dUR3UBQu/MEfu0WyqvFbzo0Q7/hAoqACJ e5HT3d7D8SNKk/C4HMuOINJ5Wb7XxyippgBIdQPggglR0aa08SRUQrsh0Q4DPq4rIy1G8n GyvX0rgXio/VZH2/E/moSk01S0iLWEsQXKeVm97mrhxklLQ6zW8X2/WZ4HUsShm2rt4ecR x+lT+cZQ/xjQV9QQVlYhak7Et/LfbP4FZd6J7PaCYqiCKDtuLP/BQbHzXL8YvkshNAigTE XgSams8onwY2JvBVjUdn4MY8s3QQVLiel5JSn6hS0itiFajUgW+2W93h02OXYg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1713325732; a=rsa-sha256; cv=none; b=lE1V7D8nFjw6qLEJTbS3rTaIoMaWihJqD05tRh/GtuJaDEahTXWfiKCAN+oDIwscnX0khh uWgJADe2mjOyVl7GJYNVSeKdKk0ajaPX7+j3hTyCZtdtXlR+L20sn57LQB0TkqitVh/YDo OYmIf5QsDFEWuzO5TGaLaEw2Kc3jXHB9JrG08KCOATqEce+F7g8x0ZSilREiOpcr88uU6s W7GLsmfcxb7HrAoUTDn+wFck6uD3GkzeeFnrODPBI0tHsd/UvHxC2h+5DPef/ZEBOBnRdj mq3viyadlyNrl4Qv27/Hnr+Z7r7N6FK6SLdXaT0vdsNzLtsjl8vBIBfSsiGe4g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1713325732; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=S89xR1sQRxaMZUnq5KIGjShxzWvIqTXfeW5WQt80LLs=; b=TWB/sRQ/Z36gVVK/SyFPsyjpd4wMlybZIa6F8a/7WYk8WUzNnOMLaYlT7X/t53fYNVXpeu EU8b3/ggqOSGDKoiRQKjwhAt7DLbi2PihVzYl3jgeO7VYl7gE6LVm/13FtR1dHyPEfqYlY ifaw14PpYo8w2OR4qZMJ6utJCvCcfxvI2mNWvltxsgS6UPcI/wgxtkLcV16zH4kvOCfFLX Fv44H3XzBe8E2HyuZhilP/UkT6oPOQO7T4l8+m61zxJjWMiGaXvH6+h/nFsLVKvmrxyg9P jhKSZmagZ3JucbW6dmMi60j+IVgXTr7NqHIO2d0IJIESaeqUswdoMbJg/lboQw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4VK6Mm1q63z19jt; Wed, 17 Apr 2024 03:48:52 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 43H3mqLZ004508; Wed, 17 Apr 2024 03:48:52 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 43H3mq8h004505; Wed, 17 Apr 2024 03:48:52 GMT (envelope-from git) Date: Wed, 17 Apr 2024 03:48:52 GMT Message-Id: <202404170348.43H3mq8h004505@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: dba461c9e39f - main - science/abinit: update 9.10.5 =?utf-8?Q?=E2=86=92?= 10.0.3 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: dba461c9e39f220042da78ea3872b3e0f0dc6e5b Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=dba461c9e39f220042da78ea3872b3e0f0dc6e5b commit dba461c9e39f220042da78ea3872b3e0f0dc6e5b Author: Yuri Victorovich AuthorDate: 2024-04-17 03:48:29 +0000 Commit: Yuri Victorovich CommitDate: 2024-04-17 03:48:48 +0000 science/abinit: update 9.10.5 → 10.0.3 Reported by: portscout --- science/abinit/Makefile | 9 ++++++--- science/abinit/distinfo | 6 +++--- science/abinit/files/patch-config_scripts_makemake | 4 ++-- .../abinit/files/patch-shared__common__src__02_clib__md5.c | 11 ----------- .../patch-shared_common_src_33__xc__lowlevel_libxc__tools.c | 6 +++--- science/abinit/files/patch-shared_libpaw_src_libpaw__libxc.c | 6 +++--- 6 files changed, 17 insertions(+), 25 deletions(-) diff --git a/science/abinit/Makefile b/science/abinit/Makefile index f9395f78fd61..0dbf5ddee359 100644 --- a/science/abinit/Makefile +++ b/science/abinit/Makefile @@ -1,5 +1,5 @@ PORTNAME= abinit -DISTVERSION= 9.10.5 +DISTVERSION= 10.0.3 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org @@ -27,7 +27,8 @@ LIB_DEPENDS= libelpa.so:math/elpa \ libwannier.so:science/wannier90 \ libnetcdff.so:science/netcdf-fortran RUN_DEPENDS= atompaw:science/atompaw -TEST_DEPENDS= ${PYNUMPY} \ +TEST_DEPENDS= bash:shells/bash \ + ${PYNUMPY} \ libyaml>0:textproc/libyaml USES= autoreconf:build blaslapack:netlib fortran gmake gnome localbase:ldflags \ @@ -35,7 +36,7 @@ USES= autoreconf:build blaslapack:netlib fortran gmake gnome localbase:ldflags USE_GITHUB= yes USE_GNOME= libxml2 SHEBANG_FILES= config/scripts/* doc/tutorial/paral_bandpw_assets/abinit.sub.* -SHEBANG_GLOB= *.py +SHEBANG_GLOB= *.py *.sh GNU_CONFIGURE= yes CONFIGURE_ENV= H5CC="${LOCALBASE}/bin/h5cc" \ HDF5_CFLAGS="-I${LOCALBASE}/include" \ @@ -52,6 +53,8 @@ TEST_TARGET= tests_abirules tests_buildsys # Many tests print RuntimeError, http TEST_WRKSRC= ${WRKSRC}/abichecks PORTDOCS= * +BINARY_ALIAS= git=false + OPTIONS_DEFINE= DOCS OPENMP OPENMPI OPTIONS_DEFAULT= OPENMP OPENMPI diff --git a/science/abinit/distinfo b/science/abinit/distinfo index 89d7bb17581b..d2b8c03f6c68 100644 --- a/science/abinit/distinfo +++ b/science/abinit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1708573562 -SHA256 (abinit-abinit-9.10.5_GH0.tar.gz) = 2e37dd2400cfd1b01d0bd925650d50e8c59e587a8d799a74188deded4d53493b -SIZE (abinit-abinit-9.10.5_GH0.tar.gz) = 130746379 +TIMESTAMP = 1713294583 +SHA256 (abinit-abinit-10.0.3_GH0.tar.gz) = bd3d319dd6146890d2428a80da5eba1280e07f6e72489612dbad73bbf3043c9d +SIZE (abinit-abinit-10.0.3_GH0.tar.gz) = 132478613 diff --git a/science/abinit/files/patch-config_scripts_makemake b/science/abinit/files/patch-config_scripts_makemake index ee97e9a3e4df..7f57ca5af7c6 100644 --- a/science/abinit/files/patch-config_scripts_makemake +++ b/science/abinit/files/patch-config_scripts_makemake @@ -1,6 +1,6 @@ ---- config/scripts/makemake.orig 2020-12-26 16:36:41 UTC +--- config/scripts/makemake.orig 2024-04-16 19:11:37 UTC +++ config/scripts/makemake -@@ -408,7 +408,7 @@ if ( opts.run_clean ): +@@ -414,7 +414,7 @@ if ( opts.run_clean ): sys.exit(0) # Get Autotools versions diff --git a/science/abinit/files/patch-shared__common__src__02_clib__md5.c b/science/abinit/files/patch-shared__common__src__02_clib__md5.c deleted file mode 100644 index 16408c671ee0..000000000000 --- a/science/abinit/files/patch-shared__common__src__02_clib__md5.c +++ /dev/null @@ -1,11 +0,0 @@ ---- shared/common/src/02_clib/md5.c.orig 2017-02-28 12:02:53 UTC -+++ shared/common/src/02_clib/md5.c -@@ -47,7 +47,7 @@ - #ifdef HAVE_MALLOC_MALLOC_H - # include - #else --# include -+# include - #endif - - #include "md5.h" diff --git a/science/abinit/files/patch-shared_common_src_33__xc__lowlevel_libxc__tools.c b/science/abinit/files/patch-shared_common_src_33__xc__lowlevel_libxc__tools.c index cc74d5aac0e3..ac962841185f 100644 --- a/science/abinit/files/patch-shared_common_src_33__xc__lowlevel_libxc__tools.c +++ b/science/abinit/files/patch-shared_common_src_33__xc__lowlevel_libxc__tools.c @@ -1,6 +1,6 @@ ---- shared/common/src/33_xc_lowlevel/libxc_tools.c.orig 2023-04-24 13:01:07 UTC +--- shared/common/src/33_xc_lowlevel/libxc_tools.c.orig 2024-04-12 04:50:51 UTC +++ shared/common/src/33_xc_lowlevel/libxc_tools.c -@@ -73,7 +73,7 @@ void xc_get_family_constants(int *xc_cst_family_unknow +@@ -74,7 +74,7 @@ void xc_get_family_constants(int *xc_cst_family_unknow *xc_cst_family_oep = XC_FAMILY_OEP; *xc_cst_family_hyb_gga = XC_FAMILY_HYB_GGA; *xc_cst_family_hyb_mgga = XC_FAMILY_HYB_MGGA; @@ -9,7 +9,7 @@ /* ==== libXC v6.0 and later ==== */ *xc_cst_family_hyb_lda = XC_FAMILY_HYB_LDA; #else -@@ -364,7 +364,7 @@ void xc_func_set_grad_sig_threshold(XC(func_type) *xc_ +@@ -405,7 +405,7 @@ int xc_func_is_hybrid_from_id(int func_id) int xc_func_is_hybrid_from_id(int func_id) /* ==== Before libXC v6.0 ==== */ {int family; family=xc_family_from_id(func_id, NULL, NULL); diff --git a/science/abinit/files/patch-shared_libpaw_src_libpaw__libxc.c b/science/abinit/files/patch-shared_libpaw_src_libpaw__libxc.c index a68cb06767cd..ac22e42945c9 100644 --- a/science/abinit/files/patch-shared_libpaw_src_libpaw__libxc.c +++ b/science/abinit/files/patch-shared_libpaw_src_libpaw__libxc.c @@ -1,6 +1,6 @@ ---- shared/libpaw/src/libpaw_libxc.c.orig 2023-04-24 13:01:07 UTC +--- shared/libpaw/src/libpaw_libxc.c.orig 2024-04-12 04:50:51 UTC +++ shared/libpaw/src/libpaw_libxc.c -@@ -70,7 +70,7 @@ void libpaw_xc_get_family_constants(int *xc_cst_family +@@ -71,7 +71,7 @@ void libpaw_xc_get_family_constants(int *xc_cst_family *xc_cst_family_oep = XC_FAMILY_OEP; *xc_cst_family_hyb_gga = XC_FAMILY_HYB_GGA; *xc_cst_family_hyb_mgga = XC_FAMILY_HYB_MGGA; @@ -9,7 +9,7 @@ /* ==== libXC v6.0 and later ==== */ *xc_cst_family_hyb_lda = XC_FAMILY_HYB_LDA; #else -@@ -312,7 +312,7 @@ void libpaw_xc_func_set_sig_threshold(XC(func_type) *x +@@ -353,7 +353,7 @@ int libpaw_xc_func_is_hybrid_from_id(int func_id) */ int libpaw_xc_func_is_hybrid_from_id(int func_id) {int family; family=xc_family_from_id(func_id, NULL, NULL);