From owner-freebsd-office@freebsd.org Sat Nov 11 13:43:59 2017 Return-Path: Delivered-To: freebsd-office@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id ABA23E6B4A8 for ; Sat, 11 Nov 2017 13:43:59 +0000 (UTC) (envelope-from bacon4000@gmail.com) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 86F651BED for ; Sat, 11 Nov 2017 13:43:59 +0000 (UTC) (envelope-from bacon4000@gmail.com) Received: by mailman.ysv.freebsd.org (Postfix) id 82D84E6B4A7; Sat, 11 Nov 2017 13:43:59 +0000 (UTC) Delivered-To: office@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 825C2E6B4A6 for ; Sat, 11 Nov 2017 13:43:59 +0000 (UTC) (envelope-from bacon4000@gmail.com) Received: from mail-it0-x236.google.com (mail-it0-x236.google.com [IPv6:2607:f8b0:4001:c0b::236]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (Client CN "smtp.gmail.com", Issuer "Google Internet Authority G2" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 48E9D1BEC for ; Sat, 11 Nov 2017 13:43:59 +0000 (UTC) (envelope-from bacon4000@gmail.com) Received: by mail-it0-x236.google.com with SMTP id m191so4676136itg.2 for ; Sat, 11 Nov 2017 05:43:59 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=to:from:subject:message-id:date:user-agent:mime-version :content-transfer-encoding:content-language; bh=sApZuB4FpLJ3lor47E2YJKRR4+Szik4bDI11M+DeOGg=; b=Y1gAQu6GV4Yidlk3obKIjQs8B+HlmQn6PY8uS5dsVnMAaj1FpesDJfhKWO2qrcDcLj x4wCwmPY5HARzOWpQRjDwGqe0/Hi8jfuBcDNAXloiTxK3cvteL/ELpPA2m4kiYCH0PA9 FvgRBAqdKnGSKiY+X4v/uHFGd9kwd5mQ/6V6NcfPomY0i07I5AG6sBTx0113F+AVC3kY qz/7oAN699D1rkJDwGuvtZZwDVjdjeBatniqmpTxab1K6uVtJucr/f7uD7cvQksitgxN r887IYIMb/KxqnAqJzmHdBT7xnoUzYPykblpZUZorVwJNStlkzFtGAakAEyxTvj/xYar SsVQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:to:from:subject:message-id:date:user-agent :mime-version:content-transfer-encoding:content-language; bh=sApZuB4FpLJ3lor47E2YJKRR4+Szik4bDI11M+DeOGg=; b=dnqqdtz5JLM1SszrzKR/oyXQUaNEbkr+TI5pQUo0JXV9qjXVq/0gPTsOeX9dDBUA3j TN4p3jx9wqMWzqdBw8A71iyvBFUKnsAguzHbg4i1HsLU0zxMH1wCy/vwWTdb0Kb9sa36 bolVoVGkGFGKUsatftyQV+DZ7DZD9wnO7cddJxX3j9tF56p9FnrEeYIC7k8TS6vHxult VX3v49sG7W67leYTvTmUVkRoth3s7tjD1TMxGl/3MPkBOsK+TKcGk2RSxYjhRDK5U/ii QyBAI3uIezRA4lX7SImp4RUaC8cXdwYOX3I9y57v/pNl10vcs1L56jn84iXMEfQDyyL0 /TYw== X-Gm-Message-State: AJaThX5PQ1msV65INISF1BPW+0dqoBLb0Q2ZiMn5mPG851iSZslX7oVW Lwl8qBn/Do4z/dCY7GuVsJBiaIH7 X-Google-Smtp-Source: AGs4zMYYaeJ5kJ9IXDSQI8pMkhusFX5IOCvvO2SCidf8n24F2PaLGqkcjrjzmPM2Gnzr+HTrY9pHrw== X-Received: by 10.36.54.210 with SMTP id l201mr4327734itl.0.1510407838258; Sat, 11 Nov 2017 05:43:58 -0800 (PST) Received: from imacbsd.acadix.biz ([2605:a000:bc42:5d00:216:cbff:feb9:145]) by smtp.gmail.com with ESMTPSA id 31sm5745217ioq.10.2017.11.11.05.43.57 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Sat, 11 Nov 2017 05:43:57 -0800 (PST) To: office@FreeBSD.org From: Jason Bacon Subject: Link issue Message-ID: <06535286-a5c8-3809-8679-920b4a837dfd@gmail.com> Date: Sat, 11 Nov 2017 07:43:56 -0600 User-Agent: Mozilla/5.0 (X11; FreeBSD amd64; rv:52.0) Gecko/20100101 Thunderbird/52.4.0 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 8bit Content-Language: en-US X-BeenThere: freebsd-office@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Office applications on FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 11 Nov 2017 13:43:59 -0000 I've ported a genomics app called bolt-lmm and I'm hitting a link error due to the fact that it's built with GCC and boost is built with clang. From what I've read, this is probably due to differences between libstdc++ and libc++, but I've been unable to find a sustainable solution so far. The app uses C++, openmp, libgfortran, and boost. I can work around it by building boost-libs with USE_GCC, so I know it's an issue of mixing clang and gcc binaries. Any suggestions? I'll keep digging in the meantime... Thanks,     Jason g++6 -O2 -pipe -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc6 -O2 -msse -msse2 -DUSE_SSE -DMEASURE_DGEMM -DVERBOSE -Wall -fPIC -fopenmp -I/usr/local/include -o Timer.o -c Timer.cpp g++6  -fstack-protector -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -fopenmp -o bolt BoltMain.o Bolt.o BoltParams.o BoltParEstCV.o BoltReml.o CovariateBasis.o DataMatrix.o FileUtils.o Jackknife.o LDscoreCalibration.o MapInterpolater.o MatrixUtils.o MemoryUtils.o NonlinearOptMulti.o NumericUtils.o PhenoBuilder.o RestrictSnpSet.o SnpData.o SnpInfo.o SpectrumTools.o StatsUtils.o StringUtils.o Timer.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib -lnlopt -lboost_program_options -lboost_iostreams -lz -llapack -lopenblas -lgfortran -lpthread -lm Bolt.o: In function `long double boost::math::detail::full_igamma_prefix, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >(long double, long double, boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> const&)': Bolt.cpp:(.text._ZN5boost4math6detail18full_igamma_prefixIeNS0_8policies6policyINS3_13promote_floatILb0EEENS3_14promote_doubleILb0EEENS3_14default_policyES9_S9_S9_S9_S9_S9_S9_S9_S9_S9_EEEET_SB_SB_RKT0_[_ZN5boost4math6detail18full_igamma_prefixIeNS0_8policies6policyINS3_13promote_floatILb0EEENS3_14promote_doubleILb0EEENS3_14default_policyES9_S9_S9_S9_S9_S9_S9_S9_S9_S9_EEEET_SB_SB_RKT0_]+0x68): warning: powl has lower than advertised precision BoltParams.o: In function `LMM::BoltParams::processCommandLineArgs(int, char**)': BoltParams.cpp:(.text+0x1a01): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)' BoltParams.cpp:(.text+0x2ca0): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)' BoltParams.cpp:(.text+0x355e): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)' BoltParams.cpp:(.text+0x3cd5): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)' BoltParams.cpp:(.text+0x3d41): undefined reference to `boost::program_options::options_description::options_description(std::__cxx11::basic_string, std::allocator > const&, unsigned int, unsigned int)' BoltParams.cpp:(.text+0x4263): undefined reference to `boost::program_options::operator<<(std::ostream&, boost::program_options::options_description const&)' BoltParams.cpp:(.text+0x42fe): undefined reference to `boost::program_options::operator<<(std::ostream&, boost::program_options::options_description const&)' BoltParams.cpp:(.text+0x43db): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.cpp:(.text+0x4574): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.cpp:(.text+0x5139): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.cpp:(.text+0x5643): undefined reference to `boost::program_options::operator<<(std::ostream&, boost::program_options::options_description const&)' BoltParams.o: In function `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, int)': BoltParams.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x3a): undefined reference to `boost::program_options::validation_error::get_template[abi:cxx11](boost::program_options::validation_error::kind_t)' BoltParams.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x50): undefined reference to `boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, int)' BoltParams.o: In function `boost::program_options::typed_value, std::allocator >, char>::xparse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&) const': BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x17): undefined reference to `boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, std::__cxx11::basic_string, std::allocator >*, int)' BoltParams.o: In function `boost::program_options::basic_command_line_parser::basic_command_line_parser(int, char const* const*)': BoltParams.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x11b): undefined reference to `boost::program_options::to_internal(std::__cxx11::basic_string, std::allocator > const&)' BoltParams.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x161): undefined reference to `boost::program_options::detail::cmdline::cmdline(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)' BoltParams.o: In function `boost::program_options::typed_value, std::allocator >, std::allocator, std::allocator > > >, char>::name[abi:cxx11]() const': BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcE4nameB5cxx11Ev]+0x39): undefined reference to `boost::program_options::arg[abi:cxx11]' BoltParams.o: In function `boost::program_options::typed_value >, char>::name[abi:cxx11]() const': BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueISt6vectorIdSaIdEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueISt6vectorIdSaIdEEcE4nameB5cxx11Ev]+0x39): undefined reference to `boost::program_options::arg[abi:cxx11]' BoltParams.o: In function `boost::program_options::typed_value::name[abi:cxx11]() const': BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueIdcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIdcE4nameB5cxx11Ev]+0x39): undefined reference to `boost::program_options::arg[abi:cxx11]' BoltParams.o: In function `boost::program_options::typed_value, std::allocator >, char>::name[abi:cxx11]() const': BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameB5cxx11Ev]+0x39): undefined reference to `boost::program_options::arg[abi:cxx11]' BoltParams.o: In function `boost::program_options::typed_value::name[abi:cxx11]() const': BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueIjcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIjcE4nameB5cxx11Ev]+0x39): undefined reference to `boost::program_options::arg[abi:cxx11]' BoltParams.o:BoltParams.cpp:(.text._ZNK5boost15program_options11typed_valueIicE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIicE4nameB5cxx11Ev]+0x39): more undefined references to `boost::program_options::arg[abi:cxx11]' follow BoltParams.o: In function `void boost::program_options::validate, std::allocator >, char>(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, std::vector, std::allocator >, std::allocator, std::allocator > > >*, int)': BoltParams.cpp:(.text._ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi[_ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi]+0xcb): undefined reference to `boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, std::__cxx11::basic_string, std::allocator >*, int)' BoltParams.cpp:(.text._ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi[_ZN5boost15program_options8validateINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEEvRNS_3anyERKSt6vectorINS3_IT0_S4_ISB_ESaISB_EEESaISE_EEPSA_IT_SaISJ_EEi]+0x2d7): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)' BoltParams.o: In function `void boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, double*, long)': BoltParams.cpp:(.text._ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x4d5): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)' BoltParams.o: In function `void boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, std::vector >*, int)': BoltParams.cpp:(.text._ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPS4_IT_SaISG_EEi[_ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPS4_IT_SaISG_EEi]+0x247): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)' BoltParams.o: In function `void boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, unsigned int*, long)': BoltParams.cpp:(.text._ZN5boost15program_options8validateIjcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIjcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x1a6): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)' BoltParams.o: In function `void boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, int*, long)': BoltParams.cpp:(.text._ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x1c3): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string, std::allocator > const&)' BoltParams.o:(.data.rel.ro._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.o:(.data.rel.ro._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.o:(.data.rel.ro._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.o:(.data.rel.ro._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): more undefined references to `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const' follow BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcEE[_ZTVN5boost15program_options11typed_valueISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options11typed_valueIdcEE[_ZTVN5boost15program_options11typed_valueIdcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options11typed_valueIicEE[_ZTVN5boost15program_options11typed_valueIicEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options11typed_valueIjcEE[_ZTVN5boost15program_options11typed_valueIjcEE]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const' BoltParams.o:(.data.rel.ro._ZTVN5boost15program_options11typed_valueISt6vectorIdSaIdEEcEE[_ZTVN5boost15program_options11typed_valueISt6vectorIdSaIdEEcEE]+0x38): more undefined references to `boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const' follow collect2: error: ld returned 1 exit status gmake[1]: *** [Makefile:120: bolt] Error 1 gmake[1]: Leaving directory '/usr/ports/wip/bolt-lmm/work/BOLT-LMM_v2.3/src' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/wip/bolt-lmm -- Earth is a beta site.