From owner-freebsd-ports-bugs@FreeBSD.ORG Fri Aug 28 07:43:34 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 7197E10656E7 for ; Fri, 28 Aug 2009 07:43:34 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 4EFC18FEEA for ; Fri, 28 Aug 2009 07:43:19 +0000 (UTC) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n7S7gsEl056343 for ; Fri, 28 Aug 2009 07:42:59 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n7S7gs9k056342; Fri, 28 Aug 2009 07:42:54 GMT (envelope-from gnats) Resent-Date: Fri, 28 Aug 2009 07:42:54 GMT Resent-Message-Id: <200908280742.n7S7gs9k056342@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen Heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 3913D10656C2 for ; Fri, 28 Aug 2009 07:34:35 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id D66DD9009C for ; Fri, 28 Aug 2009 07:27:52 +0000 (UTC) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id n7S7RCLB075936 for ; Fri, 28 Aug 2009 07:27:22 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id n7S7R7TE075915; Fri, 28 Aug 2009 07:27:07 GMT (envelope-from nobody) Message-Id: <200908280727.n7S7R7TE075915@www.freebsd.org> Date: Fri, 28 Aug 2009 07:27:07 GMT From: Wen Heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/138263: [NEW PORT]biology/p5-Bio-SCF:Read and Update SCF Chromatographic Sequence Files X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 28 Aug 2009 07:43:34 -0000 >Number: 138263 >Category: ports >Synopsis: [NEW PORT]biology/p5-Bio-SCF:Read and Update SCF Chromatographic Sequence Files >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri Aug 28 07:42:39 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-Current >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: Bio::SCF module allows you to read and update (in a restricted way) SCF chromatographic sequence files. It is an interface to Roger Staden's io-lib. See the installation directions for further instructions. WWW: http://search.cpan.org/dist/Bio-SCF/ (It require biology/iolib) >How-To-Repeat: >Fix: Patch attached with submission follows: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # p5-Bio-SCF # p5-Bio-SCF/distinfo # p5-Bio-SCF/pkg-plist # p5-Bio-SCF/pkg-descr # p5-Bio-SCF/Makefile # echo c - p5-Bio-SCF mkdir -p p5-Bio-SCF > /dev/null 2>&1 echo x - p5-Bio-SCF/distinfo sed 's/^X//' >p5-Bio-SCF/distinfo << 'dc922c414c384823a5380cedc2afa468' XMD5 (Bio-SCF-1.01.tar.gz) = bafc849e820c1c7deb7f076f9a72d274 XSHA256 (Bio-SCF-1.01.tar.gz) = e4c5c85a329ab6beae4f1be706a8ff965dc7d31480a0734024ba69d8ef1018e0 XSIZE (Bio-SCF-1.01.tar.gz) = 96377 dc922c414c384823a5380cedc2afa468 echo x - p5-Bio-SCF/pkg-plist sed 's/^X//' >p5-Bio-SCF/pkg-plist << '22222757cdd362426c6fe51e9ea722af' X%%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF/Arrays.pm X%%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF.pm X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/SCF.so X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/SCF.bs X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/.packlist X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Bio 22222757cdd362426c6fe51e9ea722af echo x - p5-Bio-SCF/pkg-descr sed 's/^X//' >p5-Bio-SCF/pkg-descr << 'c4447f403b3616af206aa88393fc6e56' XBio::SCF module allows you to read and update (in a restricted Xway) SCF chromatographic sequence files. It is an interface to XRoger Staden's io-lib. See the installation directions for further Xinstructions. X XWWW: http://search.cpan.org/dist/Bio-SCF/ c4447f403b3616af206aa88393fc6e56 echo x - p5-Bio-SCF/Makefile sed 's/^X//' >p5-Bio-SCF/Makefile << '510061dd94dc8c4d7985ddef38832b37' X# New ports collection makefile for: p5-Bio-SCF X# Date created: 28 Aug, 2009 X# Whom: Wen Heping X# X# $FreeBSD$ X# X XPORTNAME= Bio-SCF XPORTVERSION= 1.01 XCATEGORIES= biology perl5 XMASTER_SITES= CPAN XPKGNAMEPREFIX= p5- X XMAINTAINER= wenheping@gmail.com XCOMMENT= Read and Update SCF Chromatographic Sequence Files X XBUILD_DEPENDS= ${LOCALBASE}/include/io_lib/scf.h:${PORTSDIR}/biology/iolib XRUN_DEPENDS= ${BUILD_DEPENDS} X XCFLAGS+= -I${LOCALBASE}/include XLDFLAGS+= -L${LOCALBASE}/lib X XPERL_CONFIGURE= YES X XMAN3= Bio::SCF.3 X X.include 510061dd94dc8c4d7985ddef38832b37 exit >Release-Note: >Audit-Trail: >Unformatted: