Date: Sun, 19 Jan 2025 15:09:57 +0000 From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: =?UTF-8?B?W0J1ZyAyODQxNjVdIGJpb2xvZ3kvbW1zZXFzMjogdXBkYXRlIDE2?= =?UTF-8?B?LTc0N2M2IOKGkiAxNy1iODA0Zg==?= Message-ID: <bug-284165-7788@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D284165 Bug ID: 284165 Summary: biology/mmseqs2: update 16-747c6 =E2=86=92 17-b804f Product: Ports & Packages Version: Latest Hardware: Any URL: https://github.com/soedinglab/MMseqs2/releases OS: Any Status: New Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: jwb@freebsd.org Reporter: alster@vinterdalen.se CC: jwb@freebsd.org Flags: maintainer-feedback?(jwb@freebsd.org) Assignee: jwb@freebsd.org Attachment #256808 maintainer-approval?(jwb@freebsd.org) Flags: CC: jwb@freebsd.org Created attachment 256808 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D256808&action= =3Dedit [PATCH] biology/mmseqs2: update 16-747c6 =E2=86=92 17-b804f MMseqs2 Release 17-b804f Latest MMseqs2 Release 17 is mostly a bug fix release. Highlights include usability improvements in MMseqs2-GPU and fix for a common crash in the prefilter that was affecting many clustering runs. New Features and Enhancements result2profile can print frequencies in TSV format (c2c3ad9) add a new masking mode --mask-n-repeat (c2c3ad9) Improve GPU clients in server mode to wait for databasess to be loaded (e095774) GPU server now takes CUDA_VISIBLE_DEVICES into account. (b804fbe) Reduced glibc requirements for precompiled MMseqs2-GPU binaries to 2.17 (i.e. CentOS 7; db8ad2d) Bug Fixes Segmentation fault in easy-cluster starting in #916 (dc7f8ad) GPU version generated corrupted sequence outputs #912 (e3b16fa) Sequences starting with * could break Sequence mapping #927 (492297b) Indexes without k-mer index are masked now (4766f92) Invalid taxids check in majoritylca does not abort the whole process (8d17137) Merged taxID larger than any taxid in nodes.dmp could corrupt memory #9= 31 (fd37b37) Developer Notes Export NATIVE_ARCH in cmake (17cd5c0) --=20 You are receiving this mail because: You are the assignee for the bug.=
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