From owner-svn-ports-all@FreeBSD.ORG Sun Jan 5 12:07:25 2014 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id BBE6D4B6; Sun, 5 Jan 2014 12:07:25 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id A45E31963; Sun, 5 Jan 2014 12:07:25 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.7/8.14.7) with ESMTP id s05C7PSv050302; Sun, 5 Jan 2014 12:07:25 GMT (envelope-from az@svn.freebsd.org) Received: (from az@localhost) by svn.freebsd.org (8.14.7/8.14.7/Submit) id s05C7L3Q050268; Sun, 5 Jan 2014 12:07:21 GMT (envelope-from az@svn.freebsd.org) Message-Id: <201401051207.s05C7L3Q050268@svn.freebsd.org> From: Andrej Zverev Date: Sun, 5 Jan 2014 12:07:21 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r338751 - in head: biology/p5-Bio-Das biology/p5-Bio-Glite biology/p5-Bio-Phylo devel/p5-Algorithm-SVM devel/p5-VCP-Source-cvsbk graphics/p5-OpenGL mail/p5-MIME-Fast math/p5-Algorithm-K... X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 05 Jan 2014 12:07:25 -0000 Author: az Date: Sun Jan 5 12:07:20 2014 New Revision: 338751 URL: http://svnweb.freebsd.org/changeset/ports/338751 Log: - support stage Modified: head/biology/p5-Bio-Das/Makefile head/biology/p5-Bio-Das/pkg-plist (contents, props changed) head/biology/p5-Bio-Glite/Makefile head/biology/p5-Bio-Glite/pkg-plist (contents, props changed) head/biology/p5-Bio-Phylo/Makefile head/biology/p5-Bio-Phylo/pkg-plist head/devel/p5-Algorithm-SVM/Makefile head/devel/p5-Algorithm-SVM/pkg-plist (contents, props changed) head/devel/p5-VCP-Source-cvsbk/Makefile head/devel/p5-VCP-Source-cvsbk/pkg-plist (contents, props changed) head/graphics/p5-OpenGL/Makefile head/graphics/p5-OpenGL/pkg-plist (contents, props changed) head/mail/p5-MIME-Fast/Makefile head/mail/p5-MIME-Fast/pkg-plist (contents, props changed) head/math/p5-Algorithm-KMeans/Makefile head/math/p5-Algorithm-KMeans/pkg-plist head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist (contents, props changed) head/net/p5-Parallel-Pvm/Makefile head/net/p5-Parallel-Pvm/pkg-plist (contents, props changed) head/textproc/p5-Tree-Suffix/Makefile (contents, props changed) head/textproc/p5-Tree-Suffix/pkg-plist (contents, props changed) Modified: head/biology/p5-Bio-Das/Makefile ============================================================================== --- head/biology/p5-Bio-Das/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/biology/p5-Bio-Das/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -19,17 +19,4 @@ BUILD_DEPENDS:= ${RUN_DEPENDS} USES= perl5 USE_PERL5= configure -MAN3= Bio::Das.3 Bio::Das::AGPServer::Config.3 Bio::Das::AGPServer::Daemon.3 \ - Bio::Das::AGPServer::Parser.3 Bio::Das::AGPServer::SQLStorage.3 \ - Bio::Das::AGPServer::SQLStorage::CSV::DB.3 \ - Bio::Das::AGPServer::SQLStorage::MySQL::DB.3 \ - Bio::Das::DSN.3 Bio::Das::Feature.3 Bio::Das::FeatureIterator.3 \ - Bio::Das::HTTP::Fetch.3 Bio::Das::Map.3 Bio::Das::Request.3 \ - Bio::Das::Request::Dnas.3 Bio::Das::Request::Dsn.3 \ - Bio::Das::Request::Entry_points.3 Bio::Das::Request::Feature2Segments.3 \ - Bio::Das::Request::Sequences.3 Bio::Das::Request::Stylesheet.3 \ - Bio::Das::Request::Types.3 Bio::Das::Segment.3 Bio::Das::Stylesheet.3 \ - Bio::Das::Type.3 Bio::Das::TypeHandler.3 Bio::Das::Util.3 - -NO_STAGE= yes .include Modified: head/biology/p5-Bio-Das/pkg-plist ============================================================================== --- head/biology/p5-Bio-Das/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/biology/p5-Bio-Das/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -26,6 +26,31 @@ %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm %%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm +%%PERL5_MAN3%%/Bio::Das.3.gz +%%PERL5_MAN3%%/Bio::Das::AGPServer::Config.3.gz +%%PERL5_MAN3%%/Bio::Das::AGPServer::Daemon.3.gz +%%PERL5_MAN3%%/Bio::Das::AGPServer::Parser.3.gz +%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage.3.gz +%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage::CSV::DB.3.gz +%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage::MySQL::DB.3.gz +%%PERL5_MAN3%%/Bio::Das::DSN.3.gz +%%PERL5_MAN3%%/Bio::Das::Feature.3.gz +%%PERL5_MAN3%%/Bio::Das::FeatureIterator.3.gz +%%PERL5_MAN3%%/Bio::Das::HTTP::Fetch.3.gz +%%PERL5_MAN3%%/Bio::Das::Map.3.gz +%%PERL5_MAN3%%/Bio::Das::Request.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Dnas.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Dsn.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Entry_points.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Feature2Segments.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Sequences.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Stylesheet.3.gz +%%PERL5_MAN3%%/Bio::Das::Request::Types.3.gz +%%PERL5_MAN3%%/Bio::Das::Segment.3.gz +%%PERL5_MAN3%%/Bio::Das::Stylesheet.3.gz +%%PERL5_MAN3%%/Bio::Das::Type.3.gz +%%PERL5_MAN3%%/Bio::Das::TypeHandler.3.gz +%%PERL5_MAN3%%/Bio::Das::Util.3.gz @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das @dirrmtry %%SITE_PERL%%/Bio/Das/Request @dirrmtry %%SITE_PERL%%/Bio/Das/HTTP Modified: head/biology/p5-Bio-Glite/Makefile ============================================================================== --- head/biology/p5-Bio-Glite/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/biology/p5-Bio-Glite/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -17,7 +17,4 @@ RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 USE_PERL5= configure -MAN3= Bio::Glite.3 - -NO_STAGE= yes .include Modified: head/biology/p5-Bio-Glite/pkg-plist ============================================================================== --- head/biology/p5-Bio-Glite/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/biology/p5-Bio-Glite/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -1,5 +1,6 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite/.packlist %%SITE_PERL%%/Bio/Glite.pm +%%PERL5_MAN3%%/Bio::Glite.3.gz @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio @dirrmtry %%SITE_PERL%%/Bio Modified: head/biology/p5-Bio-Phylo/Makefile ============================================================================== --- head/biology/p5-Bio-Phylo/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/biology/p5-Bio-Phylo/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -30,125 +30,6 @@ TEST_DEPENDS= p5-JSON>=0:${PORTSDIR}/con USES= perl5 USE_PERL5= configure -MAN3= Bio::Phylo.3 \ - Bio::Phylo::EvolutionaryModels.3 \ - Bio::Phylo::Factory.3 \ - Bio::Phylo::Forest.3 \ - Bio::Phylo::Forest::DrawNode.3 \ - Bio::Phylo::Forest::DrawTree.3 \ - Bio::Phylo::Forest::Node.3 \ - Bio::Phylo::Forest::NodeRole.3 \ - Bio::Phylo::Forest::Tree.3 \ - Bio::Phylo::Forest::TreeRole.3 \ - Bio::Phylo::Generator.3 \ - Bio::Phylo::IO.3 \ - Bio::Phylo::Identifiable.3 \ - Bio::Phylo::Listable.3 \ - Bio::Phylo::ListableRole.3 \ - Bio::Phylo::Manual.3 \ - Bio::Phylo::Matrices.3 \ - Bio::Phylo::Matrices::Character.3 \ - Bio::Phylo::Matrices::Characters.3 \ - Bio::Phylo::Matrices::Datatype.3 \ - Bio::Phylo::Matrices::Datatype::Continuous.3 \ - Bio::Phylo::Matrices::Datatype::Custom.3 \ - Bio::Phylo::Matrices::Datatype::Dna.3 \ - Bio::Phylo::Matrices::Datatype::Illumina.3 \ - Bio::Phylo::Matrices::Datatype::Mixed.3 \ - Bio::Phylo::Matrices::Datatype::Protein.3 \ - Bio::Phylo::Matrices::Datatype::Restriction.3 \ - Bio::Phylo::Matrices::Datatype::Rna.3 \ - Bio::Phylo::Matrices::Datatype::Sanger.3 \ - Bio::Phylo::Matrices::Datatype::Solexa.3 \ - Bio::Phylo::Matrices::Datatype::Standard.3 \ - Bio::Phylo::Matrices::Datum.3 \ - Bio::Phylo::Matrices::DatumRole.3 \ - Bio::Phylo::Matrices::Matrix.3 \ - Bio::Phylo::Matrices::MatrixRole.3 \ - Bio::Phylo::Matrices::TypeSafeData.3 \ - Bio::Phylo::Mediators::TaxaMediator.3 \ - Bio::Phylo::NeXML::DOM.3 \ - Bio::Phylo::NeXML::DOM::Document.3 \ - Bio::Phylo::NeXML::DOM::Document::Libxml.3 \ - Bio::Phylo::NeXML::DOM::Document::Twig.3 \ - Bio::Phylo::NeXML::DOM::Element.3 \ - Bio::Phylo::NeXML::DOM::Element::Libxml.3 \ - Bio::Phylo::NeXML::DOM::Element::Twig.3 \ - Bio::Phylo::NeXML::Entities.3 \ - Bio::Phylo::NeXML::Meta.3 \ - Bio::Phylo::NeXML::Meta::XMLLiteral.3 \ - Bio::Phylo::NeXML::Writable.3 \ - Bio::Phylo::Parsers::Abstract.3 \ - Bio::Phylo::Parsers::Adjacency.3 \ - Bio::Phylo::Parsers::Fasta.3 \ - Bio::Phylo::Parsers::Fastq.3 \ - Bio::Phylo::Parsers::Figtree.3 \ - Bio::Phylo::Parsers::Json.3 \ - Bio::Phylo::Parsers::Newick.3 \ - Bio::Phylo::Parsers::Nexml.3 \ - Bio::Phylo::Parsers::Nexus.3 \ - Bio::Phylo::Parsers::Phylip.3 \ - Bio::Phylo::Parsers::Phyloxml.3 \ - Bio::Phylo::Parsers::Table.3 \ - Bio::Phylo::Parsers::Taxlist.3 \ - Bio::Phylo::Parsers::Tnrs.3 \ - Bio::Phylo::Parsers::Tolweb.3 \ - Bio::Phylo::Parsers::Ubiocbmeta.3 \ - Bio::Phylo::Parsers::Ubiometa.3 \ - Bio::Phylo::Parsers::Ubiosearch.3 \ - Bio::Phylo::PhyloWS.3 \ - Bio::Phylo::PhyloWS::Client.3 \ - Bio::Phylo::PhyloWS::Resource.3 \ - Bio::Phylo::PhyloWS::Resource::Description.3 \ - Bio::Phylo::PhyloWS::Service.3 \ - Bio::Phylo::PhyloWS::Service::Timetree.3 \ - Bio::Phylo::PhyloWS::Service::Tolweb.3 \ - Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3 \ - Bio::Phylo::PhyloWS::Service::UbioNameBank.3 \ - Bio::Phylo::Project.3 \ - Bio::Phylo::Set.3 \ - Bio::Phylo::Taxa.3 \ - Bio::Phylo::Taxa::TaxaLinker.3 \ - Bio::Phylo::Taxa::Taxon.3 \ - Bio::Phylo::Taxa::TaxonLinker.3 \ - Bio::Phylo::Treedrawer.3 \ - Bio::Phylo::Treedrawer::Abstract.3 \ - Bio::Phylo::Treedrawer::Canvas.3 \ - Bio::Phylo::Treedrawer::Gif.3 \ - Bio::Phylo::Treedrawer::Jpeg.3 \ - Bio::Phylo::Treedrawer::Pdf.3 \ - Bio::Phylo::Treedrawer::Png.3 \ - Bio::Phylo::Treedrawer::Processing.3 \ - Bio::Phylo::Treedrawer::Svg.3 \ - Bio::Phylo::Treedrawer::Swf.3 \ - Bio::Phylo::Unparsers::Abstract.3 \ - Bio::Phylo::Unparsers::Adjacency.3 \ - Bio::Phylo::Unparsers::Cdao.3 \ - Bio::Phylo::Unparsers::Fasta.3 \ - Bio::Phylo::Unparsers::Hennig86.3 \ - Bio::Phylo::Unparsers::Html.3 \ - Bio::Phylo::Unparsers::Json.3 \ - Bio::Phylo::Unparsers::Mrp.3 \ - Bio::Phylo::Unparsers::Newick.3 \ - Bio::Phylo::Unparsers::Nexml.3 \ - Bio::Phylo::Unparsers::Nexus.3 \ - Bio::Phylo::Unparsers::Pagel.3 \ - Bio::Phylo::Unparsers::Phylip.3 \ - Bio::Phylo::Unparsers::Phyloxml.3 \ - Bio::Phylo::Unparsers::Rss1.3 \ - Bio::Phylo::Unparsers::Taxlist.3 \ - Bio::Phylo::Util::CONSTANT.3 \ - Bio::Phylo::Util::CONSTANT::Int.3 \ - Bio::Phylo::Util::Dependency.3 \ - Bio::Phylo::Util::Exceptions.3 \ - Bio::Phylo::Util::IDPool.3 \ - Bio::Phylo::Util::Logger.3 \ - Bio::Phylo::Util::MOP.3 \ - Bio::Phylo::Util::OptionalInterface.3 \ - Bio::Phylo::Util::StackTrace.3 \ - Bio::PhyloRole.3 - -NO_STAGE= yes post-patch: @${REINPLACE_CMD} -e '/NAME/ s|Bio-Phylo|Bio::Phylo|' ${WRKSRC}/Makefile.PL Modified: head/biology/p5-Bio-Phylo/pkg-plist ============================================================================== --- head/biology/p5-Bio-Phylo/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/biology/p5-Bio-Phylo/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -122,6 +122,123 @@ %%SITE_PERL%%/Bio/Phylo/Util/OptionalInterface.pm %%SITE_PERL%%/Bio/Phylo/Util/StackTrace.pm %%SITE_PERL%%/Bio/PhyloRole.pm +%%PERL5_MAN3%%/Bio::Phylo.3.gz +%%PERL5_MAN3%%/Bio::Phylo::EvolutionaryModels.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Factory.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest::DrawNode.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest::DrawTree.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest::Node.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest::NodeRole.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest::Tree.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Forest::TreeRole.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Generator.3.gz +%%PERL5_MAN3%%/Bio::Phylo::IO.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Identifiable.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Listable.3.gz +%%PERL5_MAN3%%/Bio::Phylo::ListableRole.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Manual.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Character.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Characters.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Continuous.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Custom.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Dna.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Illumina.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Mixed.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Protein.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Restriction.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Rna.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Sanger.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Solexa.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Standard.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datum.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::DatumRole.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::Matrix.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::MatrixRole.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Matrices::TypeSafeData.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Mediators::TaxaMediator.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Document.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Document::Libxml.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Document::Twig.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Element.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Element::Libxml.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Element::Twig.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::Entities.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::Meta.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::Meta::XMLLiteral.3.gz +%%PERL5_MAN3%%/Bio::Phylo::NeXML::Writable.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Abstract.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Adjacency.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Fasta.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Fastq.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Figtree.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Json.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Newick.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Nexml.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Nexus.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Phylip.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Phyloxml.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Table.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Taxlist.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Tnrs.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Tolweb.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Ubiocbmeta.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Ubiometa.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Parsers::Ubiosearch.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Client.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Resource.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Resource::Description.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::Timetree.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::Tolweb.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3.gz +%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::UbioNameBank.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Project.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Set.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Taxa.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Taxa::TaxaLinker.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Taxa::Taxon.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Taxa::TaxonLinker.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Abstract.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Canvas.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Gif.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Jpeg.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Pdf.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Png.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Processing.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Svg.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Swf.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Abstract.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Adjacency.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Cdao.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Fasta.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Hennig86.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Html.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Json.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Mrp.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Newick.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Nexml.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Nexus.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Pagel.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Phylip.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Phyloxml.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Rss1.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Taxlist.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::CONSTANT.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::CONSTANT::Int.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::Dependency.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::Exceptions.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::IDPool.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::Logger.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::MOP.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::OptionalInterface.3.gz +%%PERL5_MAN3%%/Bio::Phylo::Util::StackTrace.3.gz +%%PERL5_MAN3%%/Bio::PhyloRole.3.gz @dirrm %%SITE_PERL%%/Bio/Phylo/Util/CONSTANT @dirrm %%SITE_PERL%%/Bio/Phylo/Util @dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers Modified: head/devel/p5-Algorithm-SVM/Makefile ============================================================================== --- head/devel/p5-Algorithm-SVM/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/devel/p5-Algorithm-SVM/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -12,11 +12,6 @@ COMMENT= Perl bindings for the libsvm Su USES= perl5 USE_PERL5= configure - -MAN3= Algorithm::SVM.3 \ - Algorithm::SVM::DataSet.3 - CC= c++ -NO_STAGE= yes .include Modified: head/devel/p5-Algorithm-SVM/pkg-plist ============================================================================== --- head/devel/p5-Algorithm-SVM/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/devel/p5-Algorithm-SVM/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -4,6 +4,8 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM/SVM.bs %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM/autosplit.ix %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM/.packlist +%%PERL5_MAN3%%/Algorithm::SVM.3.gz +%%PERL5_MAN3%%/Algorithm::SVM::DataSet.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Algorithm/SVM @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm Modified: head/devel/p5-VCP-Source-cvsbk/Makefile ============================================================================== --- head/devel/p5-VCP-Source-cvsbk/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/devel/p5-VCP-Source-cvsbk/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -17,8 +17,4 @@ RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 USE_PERL5= configure -MAN3= VCP::Source::cvsbk.3 \ - VCP::Filter::cvsbkchangeset.3 - -NO_STAGE= yes .include Modified: head/devel/p5-VCP-Source-cvsbk/pkg-plist ============================================================================== --- head/devel/p5-VCP-Source-cvsbk/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/devel/p5-VCP-Source-cvsbk/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -1,6 +1,8 @@ %%SITE_PERL%%/VCP/Source/cvsbk.pm %%SITE_PERL%%/VCP/Filter/cvsbkchangeset.pm %%SITE_PERL%%/%%PERL_ARCH%%/auto/VCP/Source/cvsbk/.packlist +%%PERL5_MAN3%%/VCP::Source::cvsbk.3.gz +%%PERL5_MAN3%%/VCP::Filter::cvsbkchangeset.3.gz @dirrmtry %%SITE_PERL%%/VCP/Source @dirrmtry %%SITE_PERL%%/VCP/Filter @dirrmtry %%SITE_PERL%%/VCP Modified: head/graphics/p5-OpenGL/Makefile ============================================================================== --- head/graphics/p5-OpenGL/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/graphics/p5-OpenGL/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -21,11 +21,6 @@ USES= perl5 display:install USE_PERL5= configure USE_GL= glut -MAN3= Array.3 \ - OpenGL.3 \ - Tessellation.3 - -NO_STAGE= yes post-patch: @${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Makefile.PL Modified: head/graphics/p5-OpenGL/pkg-plist ============================================================================== --- head/graphics/p5-OpenGL/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/graphics/p5-OpenGL/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -7,5 +7,8 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL/OpenGL.bs %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL/OpenGL.so %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL/autosplit.ix +%%PERL5_MAN3%%/Array.3.gz +%%PERL5_MAN3%%/OpenGL.3.gz +%%PERL5_MAN3%%/Tessellation.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/OpenGL Modified: head/mail/p5-MIME-Fast/Makefile ============================================================================== --- head/mail/p5-MIME-Fast/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/mail/p5-MIME-Fast/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -12,14 +12,11 @@ MAINTAINER= perl@FreeBSD.org COMMENT= Create, edit, and parse MIME messages (via gmime2 C library) BUILD_DEPENDS= p5-Scalar-List-Utils>=0:${PORTSDIR}/lang/p5-Scalar-List-Utils -LIB_DEPENDS= gmime-2.0.4:${PORTSDIR}/mail/gmime2 +LIB_DEPENDS= libgmime-2.0.so:${PORTSDIR}/mail/gmime2 RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 USE_PERL5= configure CONFIGURE_ENV= PREFIX="${PREFIX}" CCFLAGS="${CCFLAGS} ${PTHREAD_CFLAGS}" -MAN3= MIME::Fast.3 - -NO_STAGE= yes .include Modified: head/mail/p5-MIME-Fast/pkg-plist ============================================================================== --- head/mail/p5-MIME-Fast/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/mail/p5-MIME-Fast/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -4,6 +4,7 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast/Fast.bs %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast/Fast.so %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast/autosplit.ix +%%PERL5_MAN3%%/MIME::Fast.3.gz @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/MIME @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME Modified: head/math/p5-Algorithm-KMeans/Makefile ============================================================================== --- head/math/p5-Algorithm-KMeans/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/math/p5-Algorithm-KMeans/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -21,7 +21,4 @@ RUN_DEPENDS= p5-Graphics-GnuplotIF>=1.4: USES= perl5 USE_PERL5= configure -MAN3= Algorithm::KMeans.3 - -NO_STAGE= yes .include Modified: head/math/p5-Algorithm-KMeans/pkg-plist ============================================================================== --- head/math/p5-Algorithm-KMeans/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/math/p5-Algorithm-KMeans/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -1,5 +1,6 @@ %%SITE_PERL%%/Algorithm/KMeans.pm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/KMeans/.packlist +%%PERL5_MAN3%%/Algorithm::KMeans.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/KMeans @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm @dirrmtry %%SITE_PERL%%/Algorithm Modified: head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile ============================================================================== --- head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -19,11 +19,4 @@ RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 USE_PERL5= configure -MAN3= Jifty::Plugin::Authentication::Ldap.3 \ - Jifty::Plugin::Authentication::Ldap::Action::LDAPLogin.3 \ - Jifty::Plugin::Authentication::Ldap::Action::LDAPLogout.3 \ - Jifty::Plugin::Authentication::Ldap::View.3 \ - Jifty::Plugin::Authentication::Ldap::Mixin::Model::User.3 - -NO_STAGE= yes .include Modified: head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist ============================================================================== --- head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -6,6 +6,11 @@ %%SITE_PERL%%/Jifty/Plugin/Authentication/Ldap/Mixin/Model/User.pm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin/Authentication/Ldap/.packlist %%SITE_PERL%%/auto/share/dist/Jifty-Plugin-Authentication-Ldap/po/jifty_plugin_authentication_ldap.pot +%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap.3.gz +%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::Action::LDAPLogin.3.gz +%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::Action::LDAPLogout.3.gz +%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::View.3.gz +%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::Mixin::Model::User.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin/Authentication/Ldap @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin/Authentication @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin Modified: head/net/p5-Parallel-Pvm/Makefile ============================================================================== --- head/net/p5-Parallel-Pvm/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/net/p5-Parallel-Pvm/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -20,9 +20,6 @@ PVM_ROOT= ${LOCALBASE}/lib/pvm CONFIGURE_ENV= PVM_ROOT="${PVM_ROOT}" PVM_ARCH="${PVM_ROOT}/lib/pvmgetarch" CONFIGURE_ARGS= INC="-I${LOCALBASE}/include" -MAN3= Parallel::Pvm.3 - NOT_FOR_ARCHS= amd64 ia64 -NO_STAGE= yes .include Modified: head/net/p5-Parallel-Pvm/pkg-plist ============================================================================== --- head/net/p5-Parallel-Pvm/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/net/p5-Parallel-Pvm/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -5,6 +5,7 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm/autosplit.ix %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm/code2symbol.al %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm/code2text.al +%%PERL5_MAN3%%/Parallel::Pvm.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Parallel @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel Modified: head/textproc/p5-Tree-Suffix/Makefile ============================================================================== --- head/textproc/p5-Tree-Suffix/Makefile Sun Jan 5 08:14:25 2014 (r338750) +++ head/textproc/p5-Tree-Suffix/Makefile Sun Jan 5 12:07:20 2014 (r338751) @@ -10,13 +10,10 @@ PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org COMMENT= Perl interface to the libstree library -LIB_DEPENDS= stree.0:${PORTSDIR}/textproc/libstree +LIB_DEPENDS= libstree.so:${PORTSDIR}/textproc/libstree USES= perl5 USE_PERL5= configure CFLAGS+= -I${LOCALBASE}/include -MAN3= Tree::Suffix.3 - -NO_STAGE= yes .include Modified: head/textproc/p5-Tree-Suffix/pkg-plist ============================================================================== --- head/textproc/p5-Tree-Suffix/pkg-plist Sun Jan 5 08:14:25 2014 (r338750) +++ head/textproc/p5-Tree-Suffix/pkg-plist Sun Jan 5 12:07:20 2014 (r338751) @@ -2,6 +2,7 @@ %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree/Suffix/Suffix.bs %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree/Suffix/.packlist %%SITE_PERL%%/%%PERL_ARCH%%/Tree/Suffix.pm +%%PERL5_MAN3%%/Tree::Suffix.3.gz @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree/Suffix @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Tree